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2CIY
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CHLOROPEROXIDASE COMPLEXED WITH CYANIDE AND DMSO
Authors
:
K. Kuhnel, W. Blankenfeldt, J. Terner, I. Schlichting
Date
:
26 Mar 06 (Deposition) - 12 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Heme, Iron, Chloride, Manganese, Peroxidase, Pyrrolidone Carboxylic Acid, Glycoprotein, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kuhnel, W. Blankenfeldt, J. Terner, I. Schlichting
Crystal Structures Of Chloroperoxidase With Its Bound Substrates And Complexed With Formate, Acetate, And Nitrate.
J. Biol. Chem. V. 281 23990 2006
[
close entry info
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Hetero Components
(9, 26)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
2a: CYANIDE ION (CYNa)
3a: DIMETHYL SULFOXIDE (DMSa)
4a: 1,2-ETHANEDIOL (EDOa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6a: ALPHA-D-MANNOSE (MANa)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
6d: ALPHA-D-MANNOSE (MANd)
6e: ALPHA-D-MANNOSE (MANe)
6f: ALPHA-D-MANNOSE (MANf)
6g: ALPHA-D-MANNOSE (MANg)
6h: ALPHA-D-MANNOSE (MANh)
6i: ALPHA-D-MANNOSE (MANi)
6j: ALPHA-D-MANNOSE (MANj)
6k: ALPHA-D-MANNOSE (MANk)
6l: ALPHA-D-MANNOSE (MANl)
6m: ALPHA-D-MANNOSE (MANm)
7a: MANGANESE (II) ION (MNa)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
9a: PYROGLUTAMIC ACID (PCAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
2
Ligand/Ion
BROMIDE ION
2
CYN
1
Ligand/Ion
CYANIDE ION
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
5
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
MAN
13
Ligand/Ion
ALPHA-D-MANNOSE
7
MN
1
Ligand/Ion
MANGANESE (II) ION
8
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:9 , TYR A:10 , ASN A:12 , HOH A:2370 , HOH A:2371 , HOH A:2372
BINDING SITE FOR RESIDUE NAG A 512
02
AC2
SOFTWARE
ARG A:46 , ASN A:93 , THR A:95 , LEU A:281 , NAG A:594 , HOH A:2374 , HOH A:2375 , HOH A:2376
BINDING SITE FOR RESIDUE NAG A 593
03
AC3
SOFTWARE
PHE A:279 , LEU A:280 , LEU A:281 , NAG A:593 , HOH A:2157 , HOH A:2340
BINDING SITE FOR RESIDUE NAG A 594
04
AC4
SOFTWARE
TYR A:212 , ASN A:216 , HIS A:222 , LEU A:294 , ASP A:298 , NAG A:717 , HOH A:2377 , HOH A:2378 , HOH A:2379
BINDING SITE FOR RESIDUE NAG A 716
05
AC5
SOFTWARE
HIS A:222 , LEU A:223 , PRO A:292 , NAG A:716 , HOH A:2359 , HOH A:2379
BINDING SITE FOR RESIDUE NAG A 717
06
AC6
SOFTWARE
THR A:238 , SER A:239 , GLU A:266 , MAN A:741 , MAN A:742 , HOH A:2326 , HOH A:2380 , HOH A:2381
BINDING SITE FOR RESIDUE MAN A 738
07
AC7
SOFTWARE
TYR A:150 , ASP A:200 , GLU A:201 , PHE A:236 , SER A:239 , MAN A:742 , HOH A:2269 , HOH A:2270 , HOH A:2271
BINDING SITE FOR RESIDUE MAN A 739
08
AC8
SOFTWARE
PRO A:178 , ASN A:181 , VAL A:182 , THR A:238 , SER A:241 , SER A:242 , LEU A:245 , GLY A:264 , ALA A:265 , MAN A:738 , MAN A:742 , HOH A:2383 , HOH A:2384 , HOH A:2388
BINDING SITE FOR RESIDUE MAN A 741
09
AC9
SOFTWARE
SER A:239 , SER A:242 , ALA A:243 , ALA A:246 , MAN A:738 , MAN A:739 , MAN A:741 , HOH A:2385 , HOH A:2386 , HOH A:2387 , HOH A:2388
BINDING SITE FOR RESIDUE MAN A 742
10
BC1
SOFTWARE
ASP A:152 , GLU A:155 , THR A:250 , HOH A:2231 , HOH A:2389 , HOH A:2390
BINDING SITE FOR RESIDUE MAN A 750
11
BC2
SOFTWARE
GLU A:155 , GLN A:159 , SER A:251 , PRO A:253 , HOH A:2389 , HOH A:2391
BINDING SITE FOR RESIDUE MAN A 751
12
BC3
SOFTWARE
VAL A:249 , THR A:252 , ILE A:261
BINDING SITE FOR RESIDUE MAN A 752
13
BC4
SOFTWARE
THR A:252 , SER A:254 , HOH A:2319
BINDING SITE FOR RESIDUE MAN A 754
14
BC5
SOFTWARE
SER A:271 , ALA A:273
BINDING SITE FOR RESIDUE MAN A 771
15
BC6
SOFTWARE
THR A:277
BINDING SITE FOR RESIDUE MAN A 777
16
BC7
SOFTWARE
THR A:283 , MAN A:784
BINDING SITE FOR RESIDUE MAN A 783
17
BC8
SOFTWARE
THR A:283 , ASN A:284 , MAN A:783 , HOH A:2345 , HOH A:2394
BINDING SITE FOR RESIDUE MAN A 784
18
BC9
SOFTWARE
THR A:293 , HOH A:2395
BINDING SITE FOR RESIDUE MAN A 793
19
CC1
SOFTWARE
GLU A:104 , HIS A:105 , SER A:108 , HEM A:396 , HOH A:2367 , HOH A:2368
BINDING SITE FOR RESIDUE MN A 301
20
CC2
SOFTWARE
ALA A:265 , HOH A:2122 , HOH A:2254
BINDING SITE FOR RESIDUE BR A 800
21
CC3
SOFTWARE
GLN A:116
BINDING SITE FOR RESIDUE BR A 801
22
CC4
SOFTWARE
PHE A:103 , GLU A:183 , PHE A:186 , HEM A:396 , DMS A:3036
BINDING SITE FOR RESIDUE CYN A1802
23
CC5
SOFTWARE
PRO A:28 , CYS A:29 , ALA A:31 , LEU A:32 , PHE A:57 , ILE A:63 , ILE A:68 , ALA A:71 , LEU A:72 , LEU A:97 , PHE A:103 , GLU A:104 , HIS A:105 , SER A:108 , PHE A:109 , SER A:110 , GLU A:183 , PHE A:186 , ILE A:187 , PHE A:214 , MN A:301 , CYN A:1802 , HOH A:2067 , HOH A:2367 , HOH A:2369
BINDING SITE FOR RESIDUE HEM A 396
24
CC6
SOFTWARE
ILE A:179 , ALA A:267 , VAL A:268 , LEU A:270 , HOH A:2397 , HOH A:2398
BINDING SITE FOR RESIDUE EDO A 802
25
CC7
SOFTWARE
LEU A:70 , ASN A:74 , PHE A:103 , VAL A:182 , CYN A:1802 , HOH A:2129
BINDING SITE FOR RESIDUE DMS A3036
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEME_HALOPEROXIDASE (A:13-245)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_HALOPEROXIDASE
PS51405
Heme haloperoxidase family profile.
PRXC_LEPFU
34-266
1
A:13-245
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ciya1 (A:0-119)
1b: SCOP_d2ciya2 (A:120-298)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
Cloroperoxidase
(13)
Family
:
Cloroperoxidase
(13)
Protein domain
:
Cloroperoxidase
(13)
Fungus (Caldariomyces fumago) [TaxId: 5474]
(13)
1a
d2ciya1
A:0-119
1b
d2ciya2
A:120-298
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2ciyA00 (A:1-298)
View:
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(
)
(
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Architectures
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(
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Topologies
(
)
(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Chloroperoxidase
(13)
Homologous Superfamily
:
Chloroperoxidase
(13)
Caldariomyces fumago. Organism_taxid: 5474.
(6)
1a
2ciyA00
A:1-298
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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