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(-) Description

Title :  COMPLEX BETWEEN BACTERIAL CHEMOTAXIS HISTIDINE KINASE CHEA DOMAINS P4 AND P5 AND RECEPTOR-ADAPTOR PROTEIN CHEW
 
Authors :  S. Y. Park, A. M. Bilwes, B. R. Crane
Date :  10 Mar 06  (Deposition) - 18 Apr 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,W,Y
Biol. Unit 1:  A,W  (1x)
Biol. Unit 2:  B,Y  (1x)
Keywords :  Transferase/Chemotaxis, Chemotaxis, Protein-Protein Complex, Signal Transduction, Histidine Kinase, Sensory Transduction, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Y. Park, P. P. Borbat, G. Gonzalez-Bonet, J. Bhatnagar, A. M. Pollard, J. H. Freed, A. M. Bilwes, B. R. Crane
Reconstruction Of The Chemotaxis Receptor-Kinase Assembly
Nat. Struct. Mol. Biol. V. 13 400 2006
PubMed-ID: 16622408  |  Reference-DOI: 10.1038/NSMB1085

(-) Compounds

Molecule 1 - CHEMOTAXIS PROTEIN CHEA
    ChainsA, B
    EC Number2.7.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentCHEA KINASE AND REGULATORY DOMAINS, RESIDUES 355-671
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid2336
 
Molecule 2 - CHEMOTAXIS PROTEIN CHEW
    ChainsW, Y
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid2336

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABWY
Biological Unit 1 (1x)A W 
Biological Unit 2 (1x) B Y

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:405 , ASN A:409 , HIS A:413 , GLY A:414 , ASP A:449 , GLY A:453 , ILE A:454 , SER A:492 , VAL A:505 , MET A:507BINDING SITE FOR RESIDUE ANP A1672
2AC2SOFTWAREHIS B:405 , ARG B:408 , ASN B:409 , ALA B:410 , HIS B:413 , GLY B:414 , ASP B:449 , ILE B:454 , LEU B:486 , MET B:507 , HOH B:2002BINDING SITE FOR RESIDUE ANP B1672

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CH4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CH4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CH4)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHEWPS50851 CheW-like domain profile.CHEW_THEMA10-147
 
  2W:10-147
Y:10-147
CHEA_THEMA543-671
 
  2A:543-671
B:543-671
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHEWPS50851 CheW-like domain profile.CHEW_THEMA10-147
 
  1W:10-147
-
CHEA_THEMA543-671
 
  1A:543-671
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHEWPS50851 CheW-like domain profile.CHEW_THEMA10-147
 
  1-
Y:10-147
CHEA_THEMA543-671
 
  1-
B:543-671

(-) Exons   (0, 0)

(no "Exon" information available for 2CH4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:320
 aligned with CHEA_THEMA | Q56310 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:320
                                   361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671
           CHEA_THEMA   352 KIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
               SCOP domains ---d2ch4a2 A:355-539 Histidine kinase CheA                                                                                                                                                  d2ch4a1 A:540-671 Histidine kinase CheA, C-terminal domain                                                                           SCOP domains
               CATH domains 2ch4A01 A:352-540  [code=3.30.565.10, no name defined]                                                                                                                                       2ch4A02 SH3 Domains  2ch4A03 A:562-626 CheA-289, Domain 4                             2ch4A02 A:541-561,A:627-671 SH3 Domains       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeehhhhhhhhhhhhhhhhhh....eeeeee....eee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhh.....eeeeeeeee...eeeeeeee.....hhhhhhhhhhhh.....hhhhh.hhhhhhhh..........hhhhhh....hhhhhhhhhhhh..eeeeee.....eeeeeeee....eeeeeeee....eeeee...eeeee.......ee....eeee....eeeeeehhhhh...........eeeeeee..eeeeeee.eeeeeeeee.............eeeeee.....eeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHEW  PDB: A:543-671 UniProt: 543-671                                                                                             PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ch4 A 352 GSHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
                                   361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671

Chain B from PDB  Type:PROTEIN  Length:305
 aligned with CHEA_THEMA | Q56310 from UniProtKB/Swiss-Prot  Length:671

    Alignment length:319
                                   362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662         
           CHEA_THEMA   353 IRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
               SCOP domains --d2ch4b2 B:355-539 Histidine kinase CheA                                                                                                                                                  d2ch4b1 B:540-671 Histidine kinase CheA, C-terminal domain                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhhhh....eeeee.....eeehhhhhhhhhhhhhhhhhhhh....hhhhhhh......eeeeeeeeee..eeeeeeee.....hhhhhhhhhhhh...hhhhhh..hhhhhhhhhh.....--------------hhhhhhhhhhh..ee..eee...eeeeeeeee....eeeeeeee....eeeee...eeeee.......ee....eeeee..eeeeeeehhhhhh..........eeeeeee..eeeeeee.eeeeeeeee.....hhhhhh..eeeeee.....eeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CHEW  PDB: B:543-671 UniProt: 543-671                                                                                             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ch4 B 353 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS--------------MDVVKNVVESLNGSISIESEKDKGTKVTIRLPLTLAIIQALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVLQIEHKEELEEMEAVIVRVGNRKYGIVVDDLLGQDDIVIKSLGKVFSEVKEFSGAAILGDGSIALIINVSGIV 671
                                   362       372       382       392       402       412       422       432       442       452       462       472       482       492         -    |  512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662         
                                                                                                                                                                     492            507                                                                                                                                                                    

Chain W from PDB  Type:PROTEIN  Length:139
 aligned with CHEW_THEMA | Q56311 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:139
                                    18        28        38        48        58        68        78        88        98       108       118       128       138         
           CHEW_THEMA     9 KEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLTNVSDKFGKKSKGLVKTDGRLIIYLDIDKIIEEITV 147
               SCOP domains d2ch4w1 W:9-147 Chemotaxis protein CheW                                                                                                     SCOP domains
               CATH domains 2ch4W01 SH3 Domains --------------------------------------------------------------------2ch4W01 W:9-28,W:97-136 SH3 Domains     ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eee....eeeeee.............eeeeeee..eeeeeeehhhhhh.........eeeeee....eeeeee.eeeeeeeee................eeee........eeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -CHEW  PDB: W:10-147 UniProt: 10-147                                                                                                        PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ch4 W   9 KEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLTNVSDKFGKKSKGLVKTDGRLIIYLDIDKIIEEITV 147
                                    18        28        38        48        58        68        78        88        98       108       118       128       138         

Chain Y from PDB  Type:PROTEIN  Length:140
 aligned with CHEW_THEMA | Q56311 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:140
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147
           CHEW_THEMA     8 LKEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLTNVSDKFGKKSKGLVKTDGRLIIYLDIDKIIEEITV 147
               SCOP domains -d2ch4y1 Y:9-147 Chemotaxis protein CheW                                                                                                     SCOP domains
               CATH domains 2ch4Y01 SH3 Domains  --------------------------------------------------------------------2ch4Y01 Y:8-28,Y:97-136 SH3 Domains     ----------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeee...eeeeee...............eeee....eeeeeehhhhhh.........eeeee......eeeee.eeeeeeeee................eeeeee....eeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHEW  PDB: Y:10-147 UniProt: 10-147                                                                                                        PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ch4 Y   8 LKEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLVDRVLGVLRITENQLDLTNVSDKFGKKSKGLVKTDGRLIIYLDIDKIIEEITV 147
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (3, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CH4)

(-) Gene Ontology  (15, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (CHEA_THEMA | Q56310)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0004673    protein histidine kinase activity    Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain W,Y   (CHEW_THEMA | Q56311)
molecular function
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHEA_THEMA | Q563101b3q 1i58 1i59 1i5a 1i5b 1i5c 1i5d 1tqg 1u0s 2ld6 3ja6 3ur1 4jpb 4xiv
        CHEW_THEMA | Q563111k0s 3ja6 3ur1 4jpb

(-) Related Entries Specified in the PDB File

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1i59 STRUCTURE OF THE HISTIDINE KINASE CHEA ATP- BINDING DOMAININ COMPLEX WITH ADPNP AND MAGENSIUM
1i5a STRUCTURE OF CHEA DOMAIN P4 IN COMPLEX WITH ADPCP ANDMANGANESE
1i5b STRUCTURE OF CHEA DOMAIN P4 IN COMPLEX WITH ADPNP ANDMANGANESE
1i5c STRUCTURE OF CHEA DOMAIN P4 IN COMPLEX WITH ADP
1i5d STRUCTURE OF CHEA DOMAIN P4 IN COMPLEX WITH TNP-ATP
1k0s SOLUTION STRUCTURE OF THE CHEMOTAXIS PROTEIN CHEW FROM THETHERMOPHILIC ORGANISM THERMOTOGA MARITIMA
1tqg CHEA PHOSPHOTRANSFERASE DOMAIN FROM THERMOTOGA MARITIMA
1u0s CHEMOTAXIS KINASE CHEA P2 DOMAIN IN COMPLEX WITH RESPONSEREGULATOR CHEY FROM THE THERMOPHILE THERMOTOGA MARITIMA