2BWN - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   5-AMINOLEVULINATE SYNTHASE FROM RHODOBACTER CAPSULATUS

Authors :   I. Astner, J. O. Schulze, J. J. Van Den Heuvel, D. Jahn, W. -D. Schubert D. W. Heinz

Date :   15 Jul 05 (Deposition) - 27 Sep 05 (Release) - 23 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: D,E  (1x)

Keywords :   Tetrapyrrole Biosynthesis, Heme Biosynthesis, Pyridoxal Phosphate Dependent, Transferase, Acyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Astner, J. O. Schulze, J. J. Van Den Heuvel, D. Jahn, W. -D. Schubert, D. W. Heinz
Crystal Structure Of 5-Aminolevulinate Synthase, The First Enzyme Of Heme Biosynthesis, And Its Link To Xlsa In Humans.
Embo J. V. 24 3166 2005
PubMed-ID: 16121195 | Reference-DOI: 10.1038/SJ.EMBOJ.7600792

Molecule 1 - 5-AMINOLEVULINATE SYNTHASE
	Atcc	:	DSM 1710
	Chains	:	A, B, D, E
	EC Number	:	2.3.1.37
	Organism Scientific	:	RHODOBACTER CAPSULATUS
	Organism Taxid	:	1061
	Other Details	:	LYSINE 248 COVALENTLY BOUND TO PLP
	Other Details - Source	:	GERMAN COLLECTION OF MICROORGANISMS (DSM)
	Synonym	:	5-AMINOLEVULINIC ACID SYNTHASE, DELTA- AMINOLEVULINATE SYNTHASE, DELTA-ALA SYNTHETASE

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 13)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	CL	2	Ligand/Ion	CHLORIDE ION
3	FMT	1	Ligand/Ion	FORMIC ACID
4	PLP	4	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
5	SIN	3	Ligand/Ion	SUCCINIC ACID
6	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FMT	-1	Ligand/Ion	FORMIC ACID
4	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
5	SIN	1	Ligand/Ion	SUCCINIC ACID
6	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 6)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FMT	1	Ligand/Ion	FORMIC ACID
4	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
5	SIN	2	Ligand/Ion	SUCCINIC ACID
6	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:114 , ALA A:115 , TYR A:116 , HIS A:142 , GLU A:185 , ASP A:214 , VAL A:216 , HIS A:217 , THR A:245 , LYS A:248 , HOH A:2128 , SER B:277 , THR B:278	BINDING SITE FOR RESIDUE PLP A1248
02	AC2	SOFTWARE	SER A:277 , THR A:278 , SER B:114 , ALA B:115 , TYR B:116 , HIS B:142 , GLU B:185 , ASP B:214 , VAL B:216 , HIS B:217 , THR B:245 , LYS B:248 , HOH B:2099	BINDING SITE FOR RESIDUE PLP B1248
03	AC3	SOFTWARE	SER D:114 , ALA D:115 , TYR D:116 , HIS D:142 , GLU D:185 , ASP D:214 , VAL D:216 , HIS D:217 , THR D:245 , LYS D:248 , HOH D:2078 , SER E:277 , THR E:278	BINDING SITE FOR RESIDUE PLP D1248
04	AC4	SOFTWARE	SER D:277 , THR D:278 , SER E:114 , ALA E:115 , TYR E:116 , HIS E:142 , SER E:144 , GLU E:185 , SER E:189 , ASP E:214 , VAL E:216 , HIS E:217 , THR E:245 , LYS E:248 , HOH E:2091	BINDING SITE FOR RESIDUE PLP E1248
05	AC5	SOFTWARE	ARG A:157 , LYS E:156	BINDING SITE FOR RESIDUE CL A1399
06	AC6	SOFTWARE	ALA B:143 , ILE B:146 , GLU B:147	BINDING SITE FOR RESIDUE SO4 B1396
07	AC7	SOFTWARE	ARG A:28 , PHE A:33 , VAL A:50 , TRP A:51 , CYS A:52 , GLY A:53 , ASP A:55 , THR A:376 , HIS A:381	BINDING SITE FOR RESIDUE SIN A1398
08	AC8	SOFTWARE	ARG D:28 , PHE D:33 , TRP D:51 , CYS D:52 , GLY D:53 , ASP D:55 , THR D:376 , HIS D:381 , HOH D:2028	BINDING SITE FOR RESIDUE SIN D1399
09	AC9	SOFTWARE	ARG E:28 , PRO E:34 , VAL E:50 , TRP E:51 , CYS E:52 , GLY E:53 , ASP E:55 , THR E:376 , HIS E:381 , HOH E:2025	BINDING SITE FOR RESIDUE SIN E1400
10	BC1	SOFTWARE	ARG A:21 , THR A:365 , THR B:83 , ASN B:85 , ILE B:275 , PHE B:276 , HOH B:2112	BINDING SITE FOR RESIDUE ACY B1397
11	BC2	SOFTWARE	THR D:83 , ASN D:85 , ILE D:86 , ILE D:275 , ARG E:21 , THR E:365	BINDING SITE FOR RESIDUE ACY D1398
12	BC3	SOFTWARE	ARG D:21 , THR D:365 , THR E:83 , ASN E:85 , ILE E:86 , ILE E:275	BINDING SITE FOR RESIDUE FMT E1401

(no "SS Bond" information available for 2BWN)

Asymmetric Unit

No.	Residues
1	Phe A:33	-	Pro A:34
2	Phe A:363	-	Pro A:364
3	Phe B:33	-	Pro B:34
4	Phe B:363	-	Pro B:364
5	Phe D:33	-	Pro D:34
6	Phe D:363	-	Pro D:364
7	Phe E:33	-	Pro E:34
8	Phe E:363	-	Pro E:364

(no "SAP(SNP)/Variant" information available for 2BWN)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_2	PS00599	Aminotransferases class-II pyridoxal-phosphate attachment site.	HEM1_RHOCB	245-254	4	A:245-254 B:245-254 D:245-254 E:245-254

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_2	PS00599	Aminotransferases class-II pyridoxal-phosphate attachment site.	HEM1_RHOCB	245-254	2	A:245-254 B:245-254 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_2	PS00599	Aminotransferases class-II pyridoxal-phosphate attachment site.	HEM1_RHOCB	245-254	2	- - D:245-254 E:245-254

(no "Exon" information available for 2BWN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:396
 aligned with HEM1_RHOCB | P18079 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:396
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391      
           HEM1_RHOCB     2 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIADLHGKEAALVFSSAYIANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIADEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASAKMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
               SCOP domains d2bwna1 A:2-397 5-aminolevulinate synthase                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......eeee......eeeee.....eeeeee........hhh.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeee....hhhhhhhhhh......eeeeee...........hhhhhhhhhhh..eeeee..............hhhhh.hhhhh.eeeee.........eeeee.hhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............eeee...hhhhhhhhhhhhhhh.ee..ee..........eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFE----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bwn A   2 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Chain B from PDB  Type:PROTEIN  Length:395
 aligned with HEM1_RHOCB | P18079 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:395
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390     
           HEM1_RHOCB     1 MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIADLHGKEAALVFSSAYIANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIADEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASAKMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395
               SCOP domains d2bwnb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.......eeee......eeeee.....eeeeee........hhh.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeee....hhhhhhhhhh......eeeeee...........hhhhhhhhhhh..eeeee..............hhhhh.hhhhh.eeeee.........eeeee.hhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............eeee...hhhhhhhhhhhhhhh.ee..ee..........eeee.................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFE--------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bwn B   1 MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain D from PDB  Type:PROTEIN  Length:397
 aligned with HEM1_RHOCB | P18079 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:397
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       
           HEM1_RHOCB     1 MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIADLHGKEAALVFSSAYIANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIADEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASAKMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
               SCOP domains d2bwnd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.......eeee......eeeee.....eeeeee........hhh.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeee....hhhhhhhhhh......eeeeee...........hhhhhhhhhhh..eeeee..............hhhhh.hhhhh.eeeee.........eeeee.hhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............eeee...hhhhhhhhhhhhhhh.ee..ee..........eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFE----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bwn D   1 MDYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain E from PDB  Type:PROTEIN  Length:398
 aligned with HEM1_RHOCB | P18079 from UniProtKB/Swiss-Prot  Length:409

    Alignment length:398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
           HEM1_RHOCB     2 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIADLHGKEAALVFSSAYIANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIADEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASAKMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
               SCOP domains d2bwne_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......eeee......eeeee.....eeeeee........hhh.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh....eeeee....hhhhhhhhh....eeee....hhhhhhhhhh......eeeeee...........hhhhhhhhhhh..eeeee..............hhhhh.hhhhh.eeeee.........eeeee.hhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............eeee...hhhhhhhhhhhhhhh.ee..ee..........eeee........................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFE------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bwn E   2 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: GABA-aminotransferase-like (167)

Protein domain: 5-aminolevulinate synthase (1)

Rhodobacter capsulatus [TaxId: 1061] (1)

d2bwna1

A:2-397

Protein domain: automated matches (28)

Rhodobacter capsulatus [TaxId: 1061] (3)

2a	d2bwnb_	B:
2b	d2bwnd_	D:
2c	d2bwne_	E:

(no "CATH Domain" information available for 2BWN)

(no "Pfam Domain" information available for 2BWN)

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E (HEM1_RHOCB | P18079)

molecular function
	GO:0003870	5-aminolevulinate synthase activity	Catalysis of the reaction: glycine + H(+) + succinyl-CoA = 5-aminolevulinate + CO(2) + CoA.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0006783	heme biosynthetic process	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0006782	protoporphyrinogen IX biosynthetic process	The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
	GO:0033014	tetrapyrrole biosynthetic process	The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		ACY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FMT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PLP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SIN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Phe A:33 - Pro A:34	[ RasMol ]
		Phe A:363 - Pro A:364	[ RasMol ]
		Phe B:33 - Pro B:34	[ RasMol ]
		Phe B:363 - Pro B:364	[ RasMol ]
		Phe D:33 - Pro D:34	[ RasMol ]
		Phe D:363 - Pro D:364	[ RasMol ]
		Phe E:33 - Pro E:34	[ RasMol ]
		Phe E:363 - Pro E:364	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2bwn
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	HEM1_RHOCB \| P18079
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	2.3.1.37
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	HEM1_RHOCB \| P18079
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	HEM1_RHOCB \| P18079	:	2bwo 2bwp

2bwn	5-AMINOLEVULINATE SYNTHASE FROM RHODOBACTER CAPSULATUS
2bwo	5-AMINOLEVULINATE SYNTHASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH SUCCINYL-COA
2bwp	5-AMINOLEVULINATE SYNTHASE FROM RHODOBACTER CAPSULATUS IN COMPLEX WITH GLYCINE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 13)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File