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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PHYCOCYANIN FROM GRACILARIA CHILENSIS.
 
Authors :  C. Contreras-Martel, J. Martinez-Oyanedel, G. Poo-Caama, C. Bruna, M. Bunster
Date :  23 Jun 05  (Deposition) - 16 Aug 06  (Release) - 02 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,K,L,M,N,O,P
Keywords :  Light Harvesting, Phycobilisome, Phycobiliprotein, Phycocyanin, Phycocyanobilin, Photosynthesis, Chloroplast (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Contreras-Martel, A. Matamala, C. Bruna, G. Poo-Caama, D. Almonacid, M. Figueroa, J. Martinez-Oyanedel, M. Bunster
The Structure At 2 A Resolution Of Phycocyanin From Gracilaria Chilensis And The Energy Transfer Network In A Pc-Pc Complex.
Biophys. Chem. V. 125 388 2007
PubMed-ID: 17118524  |  Reference-DOI: 10.1016/J.BPC.2006.09.014

(-) Compounds

Molecule 1 - C-PHYCOCYANIN ALPHA SUBUNIT
    Chains: A, C, E, K, M, O
    Organism Common: RED ALGA
    Organism Scientific: GRACILARIA CHILENSIS
    Organism Taxid: 2775
    Other Details: N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS)
    Other Details - Source: COLLECTED AT THE PACIFIC COAST, COLIUMO BAY, CHILE
 
Molecule 2 - C-PHYCOCYANIN BETA SUBUNIT
    Chains: B, D, F, L, N, P
    Organism Common: RED ALGA
    Organism Scientific: GRACILARIA CHILENSIS
    Organism Taxid: 2775
    Other Details: N-METHYL-ASPARAGINE 72 A (ALPHA CHAINS), PHYCOCYANOBILIN 84 A (ALPHA CHAINS), PHYCOCYANOBILIN 82 B AND 153 B (BETA CHAINS)
    Other Details - Source: COLLECTED AT THE PACIFIC COAST, COLIUMO BAY, CHILE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1CYC17Ligand/IonPHYCOCYANOBILIN
2MEN6Mod. Amino AcidN-METHYL ASPARAGINE
3PEB1Ligand/IonPHYCOERYTHROBILIN

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:59 , THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , ALA A:75 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , HOH A:2080 , HOH A:2081 , ARG F:57 , TYR F:74 , THR F:75 , ASN F:76 , HOH F:2048BINDING SITE FOR RESIDUE CYC A1163
02AC2SOFTWAREMEN B:72 , ALA B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ARG B:108 , LEU B:113 , LEU B:120 , THR B:122 , SER B:126 , HOH B:2067 , HOH B:2085 , HOH B:2113BINDING SITE FOR RESIDUE CYC B1174
03AC3SOFTWAREGLN A:25 , ASN A:28 , ASN B:35 , LYS B:36 , ASP B:39 , ILE B:40 , ALA B:142 , SER B:145 , THR B:148 , PRO B:149 , SER B:150 , GLY B:151 , CYS B:153 , HOH B:2033 , HOH B:2114 , ARG K:33 , HOH K:2019BINDING SITE FOR RESIDUE PEB B1175
04AC4SOFTWAREARG B:57 , ILE B:67 , TYR B:74 , THR B:75 , ASN B:76 , VAL C:59 , THR C:66 , PRO C:72 , ASN C:73 , TYR C:74 , ALA C:75 , GLY C:80 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:90 , TYR C:110 , ILE C:118 , PHE C:122 , LEU C:124 , TRP C:128 , TYR C:129 , HOH C:2080 , HOH C:2081 , HOH C:2082 , HOH C:2083BINDING SITE FOR RESIDUE CYC C1163
05AC5SOFTWAREMEN D:72 , ALA D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:113 , LEU D:120 , SER D:126 , HOH D:2050 , HOH D:2076BINDING SITE FOR RESIDUE CYC D1174
06AC6SOFTWAREASN C:21 , GLN C:25 , ASN C:28 , ASN D:35 , LYS D:36 , ASP D:39 , ILE D:40 , ALA D:142 , ASN D:143 , ASP D:144 , SER D:145 , THR D:148 , PRO D:149 , SER D:150 , GLY D:151 , CYS D:153 , HOH D:2078 , HOH D:2079 , ARG O:33 , ASN O:148BINDING SITE FOR RESIDUE CYC D1175
07AC7SOFTWAREARG D:57 , TYR D:74 , THR D:75 , ASN D:76 , HOH D:2042 , TYR E:60 , THR E:66 , PRO E:72 , ASN E:73 , TYR E:74 , ALA E:75 , GLY E:80 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:90 , TYR E:110 , ILE E:118 , PHE E:122 , LEU E:124 , TRP E:128 , TYR E:129 , HOH E:2098 , HOH E:2099 , HOH E:2100BINDING SITE FOR RESIDUE CYC E1163
08AC8SOFTWAREMEN F:72 , ALA F:73 , ARG F:77 , ARG F:78 , ALA F:81 , CYS F:82 , ARG F:84 , ASP F:85 , ARG F:108 , LEU F:113 , LEU F:120 , THR F:122 , SER F:126 , VAL F:127 , ALA F:130 , HOH F:2063 , HOH F:2064BINDING SITE FOR RESIDUE CYC F1174
09AC9SOFTWAREGLN E:25 , ASN E:28 , ASN F:35 , LYS F:36 , LEU F:38 , ASP F:39 , ILE F:40 , ALA F:142 , ASN F:143 , ASP F:144 , SER F:145 , THR F:148 , PRO F:149 , SER F:150 , GLY F:151 , CYS F:153 , HOH F:2028 , HOH F:2066 , ARG M:33 , ASN M:148BINDING SITE FOR RESIDUE CYC F1175
10BC1SOFTWAREVAL K:59 , TYR K:60 , THR K:66 , ASN K:73 , ALA K:75 , GLY K:80 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , PHE K:122 , LEU K:124 , TRP K:128 , TYR K:129 , HOH K:2091 , HOH K:2092 , HOH K:2093 , HOH K:2094 , HOH K:2095 , ARG P:57 , TYR P:74 , THR P:75 , ASN P:76BINDING SITE FOR RESIDUE CYC K1163
11BC2SOFTWAREMEN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , MET L:86 , ARG L:108 , LEU L:113 , LEU L:120 , THR L:122 , SER L:126BINDING SITE FOR RESIDUE CYC L1174
12BC3SOFTWAREARG A:33 , ASN K:28 , ASN L:35 , LYS L:36 , LEU L:38 , ASP L:39 , ILE L:40 , ALA L:142 , ASP L:144 , SER L:145 , THR L:148 , PRO L:149 , SER L:150 , GLY L:151 , CYS L:153 , HOH L:2026 , HOH L:2085BINDING SITE FOR RESIDUE CYC L1175
13BC4SOFTWAREARG L:57 , TYR L:74 , THR L:75 , ASN L:76 , VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , ALA M:75 , GLY M:80 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , PHE M:122 , LEU M:124 , TRP M:128 , TYR M:129 , HOH M:2088 , HOH M:2089 , HOH M:2090 , HOH M:2091BINDING SITE FOR RESIDUE CYC M1163
14BC5SOFTWAREMEN N:72 , ALA N:73 , ARG N:77 , ARG N:78 , ALA N:81 , CYS N:82 , ARG N:84 , ASP N:85 , MET N:86 , ARG N:108 , LEU N:113 , LEU N:120 , THR N:122 , SER N:126 , HOH N:2066BINDING SITE FOR RESIDUE CYC N1174
15BC6SOFTWAREARG E:33 , GLN E:145 , ASN E:148 , LEU M:24 , GLN M:25 , ASN M:28 , ASN N:35 , LYS N:36 , ASP N:39 , ILE N:40 , ALA N:142 , ASP N:144 , SER N:145 , THR N:148 , PRO N:149 , SER N:150 , GLY N:151 , CYS N:153 , HOH N:2097 , HOH N:2098 , HOH N:2099BINDING SITE FOR RESIDUE CYC N1175
16BC7SOFTWAREARG N:57 , TYR N:74 , THR N:75 , ASN N:76 , VAL O:59 , THR O:66 , PRO O:72 , ASN O:73 , ALA O:75 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:90 , TYR O:110 , PHE O:122 , LEU O:124 , TRP O:128 , TYR O:129 , HOH O:2057 , HOH O:2058 , HOH O:2059BINDING SITE FOR RESIDUE CYC O1163
17BC8SOFTWAREMEN P:72 , ALA P:73 , ARG P:77 , ARG P:78 , ALA P:81 , CYS P:82 , ARG P:84 , ASP P:85 , MET P:86 , ILE P:88 , TYR P:92 , ARG P:108 , LEU P:113 , LEU P:120 , THR P:122 , SER P:126 , HOH P:2055BINDING SITE FOR RESIDUE CYC P1174
18BC9SOFTWAREARG C:33 , GLN C:145 , ASN C:148 , LEU O:24 , GLN O:25 , ASN O:28 , ASN P:35 , LYS P:36 , ASP P:39 , ILE P:40 , ALA P:142 , ASP P:144 , SER P:145 , THR P:148 , PRO P:149 , SER P:150 , GLY P:151 , CYS P:153 , HOH P:2018BINDING SITE FOR RESIDUE CYC P1175

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BV8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BV8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BV8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BV8)

(-) Exons   (0, 0)

(no "Exon" information available for 2BV8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8a_ A: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8A00 A:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 A   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain B from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8b_ B: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8B00 B:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 B   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN                                                                                                


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8c_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8C00 C:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 C   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain D from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8d_ D: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8D00 D:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 D   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN                                                                                                


Chain E from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8e_ E: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8E00 E:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 E   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain F from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8f_ F: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8F00 F:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 F   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN                                                                                                


Chain K from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8k_ K: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8K00 K:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 K   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain L from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8l_ L: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8L00 L:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 L   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN                                                                                                


Chain M from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8m_ M: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8M00 M:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 M   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain N from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8n_ N: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8N00 N:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 N   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN                                                                                                


Chain O from PDB  Type:PROTEIN  Length:162
 aligned with Q6B8L6_GRATL | Q6B8L6 from UniProtKB/TrEMBL  Length:162

    Alignment length:162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  
         Q6B8L6_GRATL     1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRASASLEAARSLTSNAQRLITGAAQSVYTKFPFTTQMPGPTYASSAIGKAKCARDIGYYLRMTTYCLVVGATGPMDEYLIAGLEEINRSFELSPSWYIEALQYIKNSHSLSGQAANEANTYLDYAINALS 162
               SCOP domains d2bv8o_ O: automated matches                                                                                                                                       SCOP domains
               CATH domains 2bv8O00 O:1-162 Phycocyanins                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bv8 O   1 MKTPITEAIASADSQGRFLSNGELQSINGRYQRATASLEAARSLTSNAERLISGAAQSVYSKFPYTTQMQGPNYAADATGKAKCARDIGYYLRMVTYCLVVGATGPMDEYLIAGLSEINRSFELSPSWYIEALEYIKDSHALSGQAANEANTYLDYAINALS 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain P from PDB  Type:PROTEIN  Length:172
 aligned with Q6B8L7_GRATL | Q6B8L7 from UniProtKB/TrEMBL  Length:172

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q6B8L7_GRATL     1 MLDAFAKVVAQADARGEFLSNTQLDALANMVAEGNKRLDIVNKINSNASAIITNSARSLFAEQPQLVQPGGNAYTNRRMAACLRDMEIVLRYVSYAMIAGDSSVLDDRCLNGLRETYQALGTPGTSVAVAIQKMKEASVSLANDSNGTPIGDCSSLTAELGVYFDRAAVAVV 172
               SCOP domains d2bv8p_ P: automated matches                                                                                                                                                 SCOP domains
               CATH domains 2bv8P00 P:1-172 Phycocyanins                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv8 P   1 MLDAFAKVVAQADARGEFLSNTQLDALANMIAEGNKRLDIVNRINSNASAIVSNSARALFAEQPQLIQPGGnAYTNRRMAACLRDMEIVLRYVSYAEIAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIEKMKEASVSDANDSSGTPSGDCSSLSAELGTYFDRAASAVS 172
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170  
                                                                                                  72-MEN
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Globin-like (786)
(-)
Homologous Superfamily: Phycocyanins (32)
(-)
Red alga (Gracilaria chilensis) (1)
1a2bv8B00B:1-172
1b2bv8D00D:1-172
1c2bv8M00M:1-162
1d2bv8O00O:1-162
1e2bv8F00F:1-172
1f2bv8L00L:1-172
1g2bv8N00N:1-172
1h2bv8P00P:1-172
1i2bv8A00A:1-162
1j2bv8C00C:1-162
1k2bv8E00E:1-162
1l2bv8K00K:1-162

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BV8)

(-) Gene Ontology  (6, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C,E,K,M,O   (Q6B8L6_GRATL | Q6B8L6)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain B,D,F,L,N,P   (Q6B8L7_GRATL | Q6B8L7)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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 Related Entries

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