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2BV8
Asym. Unit
Info
Asym.Unit (352 KB)
Biol.Unit 1 (340 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF PHYCOCYANIN FROM GRACILARIA CHILENSIS.
Authors
:
C. Contreras-Martel, J. Martinez-Oyanedel, G. Poo-Caama, C. Bruna, M. Bunster
Date
:
23 Jun 05 (Deposition) - 16 Aug 06 (Release) - 02 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D,E,F,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,K,L,M,N,O,P (1x)
Keywords
:
Light Harvesting, Phycobilisome, Phycobiliprotein, Phycocyanin, Phycocyanobilin, Photosynthesis, Chloroplast
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Contreras-Martel, A. Matamala, C. Bruna, G. Poo-Caama, D. Almonacid, M. Figueroa, J. Martinez-Oyanedel, M. Bunster
The Structure At 2 A Resolution Of Phycocyanin From Gracilaria Chilensis And The Energy Transfer Network In A Pc-Pc Complex.
Biophys. Chem. V. 125 388 2007
[
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]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: PHYCOCYANOBILIN (CYCa)
1b: PHYCOCYANOBILIN (CYCb)
1c: PHYCOCYANOBILIN (CYCc)
1d: PHYCOCYANOBILIN (CYCd)
1e: PHYCOCYANOBILIN (CYCe)
1f: PHYCOCYANOBILIN (CYCf)
1g: PHYCOCYANOBILIN (CYCg)
1h: PHYCOCYANOBILIN (CYCh)
1i: PHYCOCYANOBILIN (CYCi)
1j: PHYCOCYANOBILIN (CYCj)
1k: PHYCOCYANOBILIN (CYCk)
1l: PHYCOCYANOBILIN (CYCl)
1m: PHYCOCYANOBILIN (CYCm)
1n: PHYCOCYANOBILIN (CYCn)
1o: PHYCOCYANOBILIN (CYCo)
1p: PHYCOCYANOBILIN (CYCp)
1q: PHYCOCYANOBILIN (CYCq)
2a: N-METHYL ASPARAGINE (MENa)
2b: N-METHYL ASPARAGINE (MENb)
2c: N-METHYL ASPARAGINE (MENc)
2d: N-METHYL ASPARAGINE (MENd)
2e: N-METHYL ASPARAGINE (MENe)
2f: N-METHYL ASPARAGINE (MENf)
3a: PHYCOERYTHROBILIN (PEBa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYC
17
Ligand/Ion
PHYCOCYANOBILIN
2
MEN
6
Mod. Amino Acid
N-METHYL ASPARAGINE
3
PEB
1
Ligand/Ion
PHYCOERYTHROBILIN
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:59 , THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , ALA A:75 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , HOH A:2080 , HOH A:2081 , ARG F:57 , TYR F:74 , THR F:75 , ASN F:76 , HOH F:2048
BINDING SITE FOR RESIDUE CYC A1163
02
AC2
SOFTWARE
MEN B:72 , ALA B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ARG B:108 , LEU B:113 , LEU B:120 , THR B:122 , SER B:126 , HOH B:2067 , HOH B:2085 , HOH B:2113
BINDING SITE FOR RESIDUE CYC B1174
03
AC3
SOFTWARE
GLN A:25 , ASN A:28 , ASN B:35 , LYS B:36 , ASP B:39 , ILE B:40 , ALA B:142 , SER B:145 , THR B:148 , PRO B:149 , SER B:150 , GLY B:151 , CYS B:153 , HOH B:2033 , HOH B:2114 , ARG K:33 , HOH K:2019
BINDING SITE FOR RESIDUE PEB B1175
04
AC4
SOFTWARE
ARG B:57 , ILE B:67 , TYR B:74 , THR B:75 , ASN B:76 , VAL C:59 , THR C:66 , PRO C:72 , ASN C:73 , TYR C:74 , ALA C:75 , GLY C:80 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:90 , TYR C:110 , ILE C:118 , PHE C:122 , LEU C:124 , TRP C:128 , TYR C:129 , HOH C:2080 , HOH C:2081 , HOH C:2082 , HOH C:2083
BINDING SITE FOR RESIDUE CYC C1163
05
AC5
SOFTWARE
MEN D:72 , ALA D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:113 , LEU D:120 , SER D:126 , HOH D:2050 , HOH D:2076
BINDING SITE FOR RESIDUE CYC D1174
06
AC6
SOFTWARE
ASN C:21 , GLN C:25 , ASN C:28 , ASN D:35 , LYS D:36 , ASP D:39 , ILE D:40 , ALA D:142 , ASN D:143 , ASP D:144 , SER D:145 , THR D:148 , PRO D:149 , SER D:150 , GLY D:151 , CYS D:153 , HOH D:2078 , HOH D:2079 , ARG O:33 , ASN O:148
BINDING SITE FOR RESIDUE CYC D1175
07
AC7
SOFTWARE
ARG D:57 , TYR D:74 , THR D:75 , ASN D:76 , HOH D:2042 , TYR E:60 , THR E:66 , PRO E:72 , ASN E:73 , TYR E:74 , ALA E:75 , GLY E:80 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:90 , TYR E:110 , ILE E:118 , PHE E:122 , LEU E:124 , TRP E:128 , TYR E:129 , HOH E:2098 , HOH E:2099 , HOH E:2100
BINDING SITE FOR RESIDUE CYC E1163
08
AC8
SOFTWARE
MEN F:72 , ALA F:73 , ARG F:77 , ARG F:78 , ALA F:81 , CYS F:82 , ARG F:84 , ASP F:85 , ARG F:108 , LEU F:113 , LEU F:120 , THR F:122 , SER F:126 , VAL F:127 , ALA F:130 , HOH F:2063 , HOH F:2064
BINDING SITE FOR RESIDUE CYC F1174
09
AC9
SOFTWARE
GLN E:25 , ASN E:28 , ASN F:35 , LYS F:36 , LEU F:38 , ASP F:39 , ILE F:40 , ALA F:142 , ASN F:143 , ASP F:144 , SER F:145 , THR F:148 , PRO F:149 , SER F:150 , GLY F:151 , CYS F:153 , HOH F:2028 , HOH F:2066 , ARG M:33 , ASN M:148
BINDING SITE FOR RESIDUE CYC F1175
10
BC1
SOFTWARE
VAL K:59 , TYR K:60 , THR K:66 , ASN K:73 , ALA K:75 , GLY K:80 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , PHE K:122 , LEU K:124 , TRP K:128 , TYR K:129 , HOH K:2091 , HOH K:2092 , HOH K:2093 , HOH K:2094 , HOH K:2095 , ARG P:57 , TYR P:74 , THR P:75 , ASN P:76
BINDING SITE FOR RESIDUE CYC K1163
11
BC2
SOFTWARE
MEN L:72 , ALA L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , MET L:86 , ARG L:108 , LEU L:113 , LEU L:120 , THR L:122 , SER L:126
BINDING SITE FOR RESIDUE CYC L1174
12
BC3
SOFTWARE
ARG A:33 , ASN K:28 , ASN L:35 , LYS L:36 , LEU L:38 , ASP L:39 , ILE L:40 , ALA L:142 , ASP L:144 , SER L:145 , THR L:148 , PRO L:149 , SER L:150 , GLY L:151 , CYS L:153 , HOH L:2026 , HOH L:2085
BINDING SITE FOR RESIDUE CYC L1175
13
BC4
SOFTWARE
ARG L:57 , TYR L:74 , THR L:75 , ASN L:76 , VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , ALA M:75 , GLY M:80 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , PHE M:122 , LEU M:124 , TRP M:128 , TYR M:129 , HOH M:2088 , HOH M:2089 , HOH M:2090 , HOH M:2091
BINDING SITE FOR RESIDUE CYC M1163
14
BC5
SOFTWARE
MEN N:72 , ALA N:73 , ARG N:77 , ARG N:78 , ALA N:81 , CYS N:82 , ARG N:84 , ASP N:85 , MET N:86 , ARG N:108 , LEU N:113 , LEU N:120 , THR N:122 , SER N:126 , HOH N:2066
BINDING SITE FOR RESIDUE CYC N1174
15
BC6
SOFTWARE
ARG E:33 , GLN E:145 , ASN E:148 , LEU M:24 , GLN M:25 , ASN M:28 , ASN N:35 , LYS N:36 , ASP N:39 , ILE N:40 , ALA N:142 , ASP N:144 , SER N:145 , THR N:148 , PRO N:149 , SER N:150 , GLY N:151 , CYS N:153 , HOH N:2097 , HOH N:2098 , HOH N:2099
BINDING SITE FOR RESIDUE CYC N1175
16
BC7
SOFTWARE
ARG N:57 , TYR N:74 , THR N:75 , ASN N:76 , VAL O:59 , THR O:66 , PRO O:72 , ASN O:73 , ALA O:75 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:90 , TYR O:110 , PHE O:122 , LEU O:124 , TRP O:128 , TYR O:129 , HOH O:2057 , HOH O:2058 , HOH O:2059
BINDING SITE FOR RESIDUE CYC O1163
17
BC8
SOFTWARE
MEN P:72 , ALA P:73 , ARG P:77 , ARG P:78 , ALA P:81 , CYS P:82 , ARG P:84 , ASP P:85 , MET P:86 , ILE P:88 , TYR P:92 , ARG P:108 , LEU P:113 , LEU P:120 , THR P:122 , SER P:126 , HOH P:2055
BINDING SITE FOR RESIDUE CYC P1174
18
BC9
SOFTWARE
ARG C:33 , GLN C:145 , ASN C:148 , LEU O:24 , GLN O:25 , ASN O:28 , ASN P:35 , LYS P:36 , ASP P:39 , ILE P:40 , ALA P:142 , ASP P:144 , SER P:145 , THR P:148 , PRO P:149 , SER P:150 , GLY P:151 , CYS P:153 , HOH P:2018
BINDING SITE FOR RESIDUE CYC P1175
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2bv8a_ (A:)
1b: SCOP_d2bv8b_ (B:)
1c: SCOP_d2bv8o_ (O:)
1d: SCOP_d2bv8p_ (P:)
1e: SCOP_d2bv8c_ (C:)
1f: SCOP_d2bv8d_ (D:)
1g: SCOP_d2bv8e_ (E:)
1h: SCOP_d2bv8f_ (F:)
1i: SCOP_d2bv8k_ (K:)
1j: SCOP_d2bv8l_ (L:)
1k: SCOP_d2bv8m_ (M:)
1l: SCOP_d2bv8n_ (N:)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Red algae (Gracilaria chilensis) [TaxId: 2775]
(1)
1a
d2bv8a_
A:
1b
d2bv8b_
B:
1c
d2bv8o_
O:
1d
d2bv8p_
P:
1e
d2bv8c_
C:
1f
d2bv8d_
D:
1g
d2bv8e_
E:
1h
d2bv8f_
F:
1i
d2bv8k_
K:
1j
d2bv8l_
L:
1k
d2bv8m_
M:
1l
d2bv8n_
N:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2bv8B00 (B:1-172)
1b: CATH_2bv8D00 (D:1-172)
1c: CATH_2bv8M00 (M:1-162)
1d: CATH_2bv8O00 (O:1-162)
1e: CATH_2bv8F00 (F:1-172)
1f: CATH_2bv8L00 (L:1-172)
1g: CATH_2bv8N00 (N:1-172)
1h: CATH_2bv8P00 (P:1-172)
1i: CATH_2bv8A00 (A:1-162)
1j: CATH_2bv8C00 (C:1-162)
1k: CATH_2bv8E00 (E:1-162)
1l: CATH_2bv8K00 (K:1-162)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Red alga (Gracilaria chilensis)
(1)
1a
2bv8B00
B:1-172
1b
2bv8D00
D:1-172
1c
2bv8M00
M:1-162
1d
2bv8O00
O:1-162
1e
2bv8F00
F:1-172
1f
2bv8L00
L:1-172
1g
2bv8N00
N:1-172
1h
2bv8P00
P:1-172
1i
2bv8A00
A:1-162
1j
2bv8C00
C:1-162
1k
2bv8E00
E:1-162
1l
2bv8K00
K:1-162
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (352 KB)
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