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(-) Description

Title :  THE X-RAY CRYSTAL STRUCTURE OF LISTERIA INNOCUA DPS H31G-H43G MUTANT.
 
Authors :  A. Ilari, S. Stefanini, E. Chiancone
Date :  08 Feb 05  (Deposition) - 10 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Iron Oxidation And Storage, Dps (Dna Binding Protein From Starved Cells), Ferroxidase Center, Mutagenesis Study, Iron Storage, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ilari, M. C. Latella, P. Ceci, F. Ribacchi, M. Su, L. Giangiacomo, S. Stefanini, N. D. Chasteen, E. Chiancone
The Unusual Intersubunit Ferroxidase Center Of Listeria Innocua Dps Is Required For Hydrogen Peroxide Detoxification But Not For Iron Uptake. A Study With Site-Specific Mutants
Biochemistry V. 44 5579 2005
PubMed-ID: 15823016  |  Reference-DOI: 10.1021/BI050005E
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NON-HEME IRON-CONTAINING FERRITIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Mutation: YES
    Organism Scientific: LISTERIA INNOCUA
    Organism Taxid: 1642
    Other Details: H31G-H43G MUTANT OF DPS FROM LISTERIA INNOCUA
    Synonym: FERRITIN-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BJY)

(-) Sites  (0, 0)

(no "Site" information available for 2BJY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BJY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BJY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BJY)

(-) PROSITE Motifs  (2, 24)

Asymmetric/Biological Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_LISIN31-47
 
 
 
 
 
 
 
 
 
 
 		  12A:32-47
B:32-47
C:32-47
D:32-47
E:32-47
F:32-47
G:32-47
H:32-47
I:32-47
J:32-47
K:32-47
L:32-47
2DPS_2PS00819 Dps protein family signature 2.DPS_LISIN57-71
 
 
 
 
 
 
 
 
 
 
 		  12A:57-71
B:57-71
C:57-71
D:57-71
E:57-71
F:57-71
G:57-71
H:57-71
I:57-71
J:57-71
K:57-71
L:57-71

(-) Exons   (0, 0)

(no "Exon" information available for 2BJY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjya1 A:7-156 Dodecameric ferritin homolog                                                                                                           SCOP domains
               CATH domains 2bjyA00 A:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy A   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain B from PDB  Type:PROTEIN  Length:151
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:151
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155 
            DPS_LISIN     6 SVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyb_ B: automated matches                                                                                                                            SCOP domains
               CATH domains 2bjyB00 B:6-156  [code=1.20.1260.10, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjy B   6 SVDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155 


Chain C from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyc_ C: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyC00 C:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy C   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain D from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyd_ D: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyD00 D:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy D   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain E from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjye_ E: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyE00 E:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy E   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain F from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyf_ F: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyF00 F:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy F   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain G from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyg_ G: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyG00 G:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy G   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain H from PDB  Type:PROTEIN  Length:149
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:149
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         
            DPS_LISIN     8 DTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyh_ H: automated matches                                                                                                                          SCOP domains
               CATH domains 2bjyH00 H:8-156  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjy H   8 DTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         


Chain I from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyi_ I: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyI00 I:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy I   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain J from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyj_ J: automated matches                                                                                                                           SCOP domains
               CATH domains 2bjyJ00 J:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bjy J   7 VDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain K from PDB  Type:PROTEIN  Length:149
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:149
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         
            DPS_LISIN     8 DTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyk_ K: automated matches                                                                                                                          SCOP domains
               CATH domains 2bjyK00 K:8-156  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjy K   8 DTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         


Chain L from PDB  Type:PROTEIN  Length:152
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:152
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154  
            DPS_LISIN     5 NSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d2bjyl_ L: automated matches                                                                                                                             SCOP domains
               CATH domains 2bjyL00 L:5-156  [code=1.20.1260.10, no name defined]                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjy L   5 NSVDTKEFLNHQVANLNVFTVKIHQIGWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Listeria innocua. Organism_taxid: 1642. (3)
1a2bjyL00L:5-156
1b2bjyB00B:6-156
1c2bjyA00A:7-156
1d2bjyC00C:7-156
1e2bjyD00D:7-156
1f2bjyE00E:7-156
1g2bjyF00F:7-156
1h2bjyG00G:7-156
1i2bjyI00I:7-156
1j2bjyJ00J:7-156
1k2bjyH00H:8-156
1l2bjyK00K:8-156

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BJY)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DPS_LISIN | P80725)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPS_LISIN | P80725: 1qgh 2bk6 2bkc

(-) Related Entries Specified in the PDB File

1qgh THE X-RAY STRUCTURE OF THE UNUSUAL DODECAMERIC FERRITIN FROM LISTERIA INNOCUA, REVEALS A NOVEL INTERSUBUNIT IRON BINDING SITE