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(-) Description

Title :  THE X-RAY STRUCTURE OF THE UNUSUAL DODECAMERIC FERRITIN FROM LISTERIA INNOCUA, REVEALS A NOVEL INTERSUBUNIT IRON BINDING SITE.
 
Authors :  A. Ilari, S. Stefanini, E. Chiancone, D. Tsernoglou
Date :  27 Apr 99  (Deposition) - 14 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Ferritin, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ilari, S. Stefanini, E. Chiancone, D. Tsernoglou
The Dodecameric Ferritin From Listeria Innocua Contains A Novel Intersubunit Iron-Binding Site.
Nat. Struct. Biol. V. 7 38 2000
PubMed-ID: 10625425  |  Reference-DOI: 10.1038/71236
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NON-HEME IRON-CONTAINING FERRITIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Organism Scientific: LISTERIA INNOCUA
    Organism Taxid: 1642

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1FE12Ligand/IonFE (III) ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS E:31 , HOH E:197 , ASP G:58 , GLU G:62BINDING SITE FOR RESIDUE FE A 157
02AC2SOFTWAREASP E:58 , GLU E:62 , HIS G:31BINDING SITE FOR RESIDUE FE B 157
03AC3SOFTWAREASP A:58 , GLU A:62 , HIS C:31 , ASP C:47BINDING SITE FOR RESIDUE FE C 157
04AC4SOFTWAREHIS A:31 , ASP A:47 , ASP C:58 , GLU C:62BINDING SITE FOR RESIDUE FE D 157
05AC5SOFTWAREASP I:58 , GLU I:62 , HIS K:31BINDING SITE FOR RESIDUE FE E 157
06AC6SOFTWAREHIS F:31 , ASP H:58 , GLU H:62BINDING SITE FOR RESIDUE FE F 157
07AC7SOFTWAREASP J:58 , GLU J:62 , HOH J:161 , HIS L:31 , ASP L:47BINDING SITE FOR RESIDUE FE G 157
08AC8SOFTWAREHIS J:31 , ASP L:58 , GLU L:62 , HOH L:158BINDING SITE FOR RESIDUE FE H 157
09AC9SOFTWAREHIS I:31 , ASP K:58 , GLU K:62BINDING SITE FOR RESIDUE FE I 157
10ASAAUTHORGLU A:62 , ASP A:58 , HIS A:31 , ASP A:47 , HIS A:43IRON-BINDING SITE
11ASBAUTHORGLU B:62 , ASP B:58 , HIS B:31 , ASP B:47 , HIS B:43IRON-BINDING SITE
12ASCAUTHORGLU C:62 , ASP C:58 , HIS C:31 , ASP C:47 , HIS C:43IRON-BINDING SITE
13ASDAUTHORGLU D:62 , ASP D:58 , HIS D:31 , ASP D:47 , HIS D:43IRON-BINDING SITE
14ASEAUTHORGLU E:62 , ASP E:58 , HIS E:31 , ASP E:47 , HIS E:43IRON-BINDING SITE
15ASFAUTHORGLU F:62 , ASP F:58 , HIS F:31 , ASP F:47 , HIS F:43IRON-BINDING SITE
16ASGAUTHORGLU G:62 , ASP G:58 , HIS G:31 , ASP G:47 , HIS G:43IRON-BINDING SITE
17ASHAUTHORGLU H:62 , ASP H:58 , HIS H:31 , ASP H:47 , HIS H:43IRON-BINDING SITE
18ASIAUTHORGLU I:62 , ASP I:58 , HIS I:31 , ASP I:47 , HIS I:43IRON-BINDING SITE
19ASJAUTHORGLU J:62 , ASP J:58 , HIS J:31 , ASP J:47 , HIS J:43IRON-BINDING SITE
20ASKAUTHORGLU K:62 , ASP K:58 , HIS K:31 , ASP K:47 , HIS K:43IRON-BINDING SITE
21ASLAUTHORGLU L:62 , ASP L:58 , HIS L:31 , ASP L:47 , HIS L:43IRON-BINDING SITE
22BC1SOFTWAREASP B:58 , GLU B:62 , HIS D:31BINDING SITE FOR RESIDUE FE J 157
23BC2SOFTWAREASP F:58 , GLU F:62 , HIS H:31BINDING SITE FOR RESIDUE FE K 157
24BC3SOFTWAREHIS B:31 , ASP D:58 , GLU D:62BINDING SITE FOR RESIDUE FE L 157

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QGH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QGH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QGH)

(-) PROSITE Motifs  (2, 24)

Asymmetric/Biological Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_LISIN31-47
 
 
 
 
 
 
 
 
 
 
 		  12A:31-47
B:31-47
C:31-47
D:31-47
E:31-47
F:31-47
G:31-47
H:31-47
I:31-47
J:31-47
K:31-47
L:31-47
2DPS_2PS00819 Dps protein family signature 2.DPS_LISIN57-71
 
 
 
 
 
 
 
 
 
 
 		  12A:57-71
B:57-71
C:57-71
D:57-71
E:57-71
F:57-71
G:57-71
H:57-71
I:57-71
J:57-71
K:57-71
L:57-71

(-) Exons   (0, 0)

(no "Exon" information available for 1QGH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qgha_ A: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghA00 A:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh A   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain B from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghb_ B: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghB00 B:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh B   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain C from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghc_ C: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghC00 C:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh C   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain D from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghd_ D: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghD00 D:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh D   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain E from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghe_ E: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghE00 E:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh E   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain F from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghf_ F: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghF00 F:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh F   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain G from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghg_ G: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghG00 G:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh G   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain H from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghh_ H: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghH00 H:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh H   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain I from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghi_ I: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghI00 I:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh I   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain J from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghj_ J: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghJ00 J:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh J   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain K from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghk_ K: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghK00 K:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh K   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain L from PDB  Type:PROTEIN  Length:150
 aligned with DPS_LISIN | P80725 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
            DPS_LISIN     7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
               SCOP domains d1qghl_ L: Dodecameric ferritin homolog                                                                                                                SCOP domains
               CATH domains 1qghL00 L:7-156  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
           Pfam domains (1) ---Ferritin-1qghL01 L:10-155                                                                                                                         - Pfam domains (1)
           Pfam domains (2) ---Ferritin-1qghL02 L:10-155                                                                                                                         - Pfam domains (2)
           Pfam domains (3) ---Ferritin-1qghL03 L:10-155                                                                                                                         - Pfam domains (3)
           Pfam domains (4) ---Ferritin-1qghL04 L:10-155                                                                                                                         - Pfam domains (4)
           Pfam domains (5) ---Ferritin-1qghL05 L:10-155                                                                                                                         - Pfam domains (5)
           Pfam domains (6) ---Ferritin-1qghL06 L:10-155                                                                                                                         - Pfam domains (6)
           Pfam domains (7) ---Ferritin-1qghL07 L:10-155                                                                                                                         - Pfam domains (7)
           Pfam domains (8) ---Ferritin-1qghL08 L:10-155                                                                                                                         - Pfam domains (8)
           Pfam domains (9) ---Ferritin-1qghL09 L:10-155                                                                                                                         - Pfam domains (9)
          Pfam domains (10) ---Ferritin-1qghL10 L:10-155                                                                                                                         - Pfam domains (10)
          Pfam domains (11) ---Ferritin-1qghL11 L:10-155                                                                                                                         - Pfam domains (11)
          Pfam domains (12) ---Ferritin-1qghL12 L:10-155                                                                                                                         - Pfam domains (12)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------DPS_1            ---------DPS_2          ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1qgh L   7 VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Listeria innocua. Organism_taxid: 1642 (1)
1a1qghA00A:7-156
1b1qghB00B:7-156
1c1qghK00K:7-156
1d1qghL00L:7-156
1e1qghC00C:7-156
1f1qghD00D:7-156
1g1qghE00E:7-156
1h1qghF00F:7-156
1i1qghG00G:7-156
1j1qghH00H:7-156
1k1qghI00I:7-156
1l1qghJ00J:7-156

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DPS_LISIN | P80725)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1qgh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPS_LISIN | P80725: 2bjy 2bk6 2bkc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1QGH)