2BEK - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ

Authors :   T. A. Leonard, P. J. G. Butler, J. Lowe

Date :   25 Nov 04 (Deposition) - 12 Jan 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Soj, Atpase, Bacterial, Chromosome Segregation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. A. Leonard, P. J. G. Butler, J. Lowe
Bacterial Chromosome Segregation: Structure And Dna Binding Of The Soj Dimer--A Conserved Biological Switch
Embo J. V. 24 270 2005
PubMed-ID: 15635448 | Reference-DOI: 10.1038/SJ.EMBOJ.7600530

Molecule 1 - SEGREGATION PROTEIN
	Atcc	:	BAA-163
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS17TTS
	Expression System Strain	:	C41 (DE3)
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	262724
	Strain	:	HB27
	Synonym	:	SOJ

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	ATP	4	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:21 , ATP A:500 , HOH A:2064 , HOH A:2174 , HOH A:2312	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	THR B:21 , ATP B:500 , HOH B:2023 , HOH B:2071 , HOH B:2189	BINDING SITE FOR RESIDUE MG B 501
3	AC3	SOFTWARE	THR C:21 , ATP C:500 , HOH C:2025 , HOH C:2062 , HOH C:2181	BINDING SITE FOR RESIDUE MG C 501
4	AC4	SOFTWARE	THR D:21 , ATP D:500 , HOH D:2028 , HOH D:2064 , HOH D:2184	BINDING SITE FOR RESIDUE MG D 501
5	AC5	SOFTWARE	GLY A:16 , GLY A:17 , VAL A:18 , GLY A:19 , LYS A:20 , THR A:21 , THR A:22 , PRO A:121 , MET A:178 , PRO A:207 , ARG A:208 , ASN A:209 , LEU A:212 , ALA A:213 , MG A:501 , HOH A:2027 , HOH A:2062 , HOH A:2064 , HOH A:2065 , HOH A:2174 , HOH A:2269 , HOH A:2294 , HOH A:2311 , HOH A:2312 , LYS B:15 , GLY B:16 , GLN B:142 , GLU B:144 , TYR B:146 , HOH B:2201	BINDING SITE FOR RESIDUE ATP A 500
6	AC6	SOFTWARE	LYS A:15 , GLY A:16 , GLU A:144 , TYR A:146 , HOH A:2186 , GLY B:16 , GLY B:17 , VAL B:18 , GLY B:19 , LYS B:20 , THR B:21 , THR B:22 , PRO B:121 , MET B:178 , ILE B:206 , PRO B:207 , ARG B:208 , ASN B:209 , LEU B:212 , ALA B:213 , MG B:501 , HOH B:2023 , HOH B:2068 , HOH B:2070 , HOH B:2071 , HOH B:2189 , HOH B:2280 , HOH B:2319 , HOH B:2320 , HOH B:2321	BINDING SITE FOR RESIDUE ATP B 500
7	AC7	SOFTWARE	GLY C:16 , GLY C:17 , VAL C:18 , GLY C:19 , LYS C:20 , THR C:21 , THR C:22 , PRO C:121 , MET C:178 , PRO C:207 , ARG C:208 , ASN C:209 , LEU C:212 , ALA C:213 , MG C:501 , HOH C:2025 , HOH C:2026 , HOH C:2060 , HOH C:2062 , HOH C:2181 , HOH C:2323 , HOH C:2324 , HOH C:2325 , HOH C:2326 , LYS D:15 , GLY D:16 , GLU D:144 , TYR D:146 , HOH D:2196	BINDING SITE FOR RESIDUE ATP C 500
8	AC8	SOFTWARE	LYS C:15 , GLY C:16 , GLU C:144 , TYR C:146 , HOH C:2193 , GLY D:16 , GLY D:17 , VAL D:18 , GLY D:19 , LYS D:20 , THR D:21 , THR D:22 , PRO D:121 , MET D:178 , PRO D:207 , ARG D:208 , ASN D:209 , LEU D:212 , ALA D:213 , MG D:501 , HOH D:2028 , HOH D:2029 , HOH D:2061 , HOH D:2063 , HOH D:2064 , HOH D:2184 , HOH D:2275 , HOH D:2311 , HOH D:2312	BINDING SITE FOR RESIDUE ATP D 500

(no "SS Bond" information available for 2BEK)

(no "Cis Peptide Bond" information available for 2BEK)

(no "SAP(SNP)/Variant" information available for 2BEK)

(no "PROSITE Motif" information available for 2BEK)

(no "Exon" information available for 2BEK)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with SOJ_THET2 | Q72H90 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:245
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244     
            SOJ_THET2     5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
               SCOP domains d2beka_ A: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhhhhhhhhhhh....eeeee....hhhhhh.......hhhhhhh..hhhhh.eee..eeee....hhhhhhhhh....hhhhhhh......eeeee.....hhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bek A   5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLAPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with SOJ_THET2 | Q72H90 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:244
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
            SOJ_THET2     5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQE 248
               SCOP domains d2bekb_ B: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhhhhhhhhhhh....eeeee....hhhhhhh......hhhhhhh..hhhhh.eee..eeee....hhhhhhhhh....hhhhhhh......eeeee.....hhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bek B   5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLAPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQE 248
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Chain C from PDB  Type:PROTEIN  Length:245
 aligned with SOJ_THET2 | Q72H90 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:245
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244     
            SOJ_THET2     5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
               SCOP domains d2bekc_ C: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhhhhhhhhhhhh...eeeee....hhhhhhh......hhhhhhhh.hhhhh.eee..eeee....hhhhhhhhhhh..hhhhhhh......eeeee.....hhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhh......eeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bek C   5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLAPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Chain D from PDB  Type:PROTEIN  Length:244
 aligned with SOJ_THET2 | Q72H90 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:244
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
            SOJ_THET2     5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQE 248
               SCOP domains d2bekd_ D: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhhhhhhhhhhh....eeeee....hhhhhh.......hhhhhhh..hhhhh.eee..eeee....hhhhhhhhh....hhhhhhh......eeeee.....hhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bek D   5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLAPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQE 248
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Thermus thermophilus [TaxId: 262724] (12)

1a	d2beka_	A:
1b	d2bekb_	B:
1c	d2bekc_	C:
1d	d2bekd_	D:

(no "CATH Domain" information available for 2BEK)

(no "Pfam Domain" information available for 2BEK)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SOJ_THET2 | Q72H90)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0007059	chromosome segregation	The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2bek)

Biological Units
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		Biological Unit 2	[ Jena3D ]

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Access by PDB/NDB ID
	2bek
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	SOJ_THET2 \| Q72H90
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	SOJ_THET2 \| Q72H90
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UniProtKB/Swiss-Prot
	SOJ_THET2 \| Q72H90	:	1wcv 2bej

1wcv	STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ
2bej	STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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