2BEJ - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ

Authors :   T. A. Leonard, P. J. G. Butler, J. Lowe

Date :   25 Nov 04 (Deposition) - 12 Jan 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Soj, Atpase, Bacterial, Chromosome Segregation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. A. Leonard, P. J. G. Butler, J. Lowe
Bacterial Chromosome Segregation: Structure And Dna Binding Of The Soj Dimer--A Conserved Biological Switch
Embo J. V. 24 270 2005
PubMed-ID: 15635448 | Reference-DOI: 10.1038/SJ.EMBOJ.7600530

Molecule 1 - SEGREGATION PROTEIN
	Atcc	:	BAA-163
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS17TTS
	Expression System Strain	:	C41 (DE3)
	Expression System Taxid	:	562
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	262724
	Strain	:	HB27
	Synonym	:	SOJ

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:21 , ADP A:500 , HOH A:2015 , HOH A:2038 , HOH A:2093 , HOH A:2095	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	GLY A:16 , GLY A:17 , VAL A:18 , GLY A:19 , LYS A:20 , THR A:21 , THR A:22 , MET A:178 , ILE A:206 , PRO A:207 , ARG A:208 , ASN A:209 , LEU A:212 , ALA A:213 , MG A:501 , HOH A:2091 , HOH A:2092 , HOH A:2093 , HOH A:2094 , HOH A:2095	BINDING SITE FOR RESIDUE ADP A 500

(no "SS Bond" information available for 2BEJ)

(no "Cis Peptide Bond" information available for 2BEJ)

(no "SAP(SNP)/Variant" information available for 2BEJ)

(no "PROSITE Motif" information available for 2BEJ)

(no "Exon" information available for 2BEJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with SOJ_THET2 | Q72H90 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:245
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244     
            SOJ_THET2     5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
               SCOP domains d2beja_ A: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......hhhhhhhhhhhhhhhh...eeeee....hhhhhhh......hhhhhhh........eee..eeee....hhhhhhhhhh...hhhhhhh......eeeee.....hhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeeee......hhhhhhhhhhhhhhh..........hhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bej A   5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQEA 249
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Thermus thermophilus [TaxId: 262724] (12)

d2beja_

(no "CATH Domain" information available for 2BEJ)

(no "Pfam Domain" information available for 2BEJ)

Asymmetric Unit(hide GO term definitions)

Chain A (SOJ_THET2 | Q72H90)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0007059	chromosome segregation	The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.

Asymmetric Unit
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		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2bej)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	2bej
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	SOJ_THET2 \| Q72H90
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	SOJ_THET2 \| Q72H90
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UniProtKB/Swiss-Prot
	SOJ_THET2 \| Q72H90	:	1wcv 2bek

1vz0	CHROMOSOME SEGREGATION PROTEIN SPO0J FROM THERMUS THERMOPHILUS
1wcv	STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ
2bek	STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Gene Ontology (5, 5)

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