2AQ1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF T-CELL RECEPTOR V BETA DOMAIN VARIANT COMPLEXED WITH SUPERANTIGEN SEC3 MUTANT

Authors :   S. Cho, C. P. Swaminathan, J. Yang, M. C. Kerzic, R. Guan, M. C. Kieke, D. M. Kranz, R. A. Mariuzza, E. J. Sundberg

Date :   17 Aug 05 (Deposition) - 21 Mar 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   T-Cell Receptor, Staphylococcal Enterotoxin C3, Superantigen, Complex (Toxin/Receptor), Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Cho, C. P. Swaminathan, J. Yang, M. C. Kerzic, R. Guan, M. C. Kieke, D. M. Kranz, R. A. Mariuzza, E. J. Sundberg
Structural Basis Of Affinity Maturation And Intramolecular Cooperativity In A Protein-Protein Interaction.
Structure V. 13 1775 2005
PubMed-ID: 16338399 | Reference-DOI: 10.1016/J.STR.2005.08.015
(for further references see the PDB file header)

Molecule 1 - T-CELL RECEPTOR BETA CHAIN V
	Chains	:	A, C, E, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PT7-7
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 2 - ENTEROTOXIN TYPE C-3
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ENTC3
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Synonym	:	SEC3

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2AQ1)

(no "Site" information available for 2AQ1)

Asymmetric Unit

No.	Residues
1	A:23	-	A:92
2	B:93	-	B:108
3	C:23	-	C:92
4	D:93	-	D:108
5	E:23	-	E:92
6	F:93	-	F:108
7	G:23	-	G:92
8	H:93	-	H:108

Asymmetric Unit

No.	Residues
1	Ser A:7	-	Pro A:8
2	Ser C:7	-	Pro C:8
3	Ser E:7	-	Pro E:8
4	Ser G:7	-	Pro G:8

(no "SAP(SNP)/Variant" information available for 2AQ1)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_1	PS00277	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.	ENTC3_STAAU	139-148	4	B:110-119 D:110-119 F:110-119 H:110-119
2	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	ENTC3_STAAU	178-201	4	B:149-172 D:149-172 F:149-172 H:149-172

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_1	PS00277	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.	ENTC3_STAAU	139-148	1	B:110-119 - - -
2	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	ENTC3_STAAU	178-201	1	B:149-172 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_1	PS00277	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.	ENTC3_STAAU	139-148	1	- D:110-119 - -
2	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	ENTC3_STAAU	178-201	1	- D:149-172 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_1	PS00277	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.	ENTC3_STAAU	139-148	1	- - F:110-119 -
2	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	ENTC3_STAAU	178-201	1	- - F:149-172 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_1	PS00277	Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.	ENTC3_STAAU	139-148	1	- - - H:110-119
2	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	ENTC3_STAAU	178-201	1	- - - H:149-172

(no "Exon" information available for 2AQ1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:109
 aligned with TVB5_MOUSE | P04213 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    19        29        39        49        59        69        79        89        99       109       119   
           TVB5_MOUSE    10 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSGTGGALDTQYFGPGTRLLVL 122
               SCOP domains d2aq1a_ A: automated matches                                                                                      SCOP domains
               CATH domains 2aq1A00 A:2-117 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee.....eeeeeee.....eeeeeee......eeeeee......ee......eeee.......eeee...hhhhheeeeeee-ee..eee---e...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 A   2 AAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILVSATPSQSSVYFCAS-GVGGTLY---FGAGTRLSVL 117
                                    11        21        31        41        51        61 ||     72        82        92 | |   101   |   114   
                                                                                        63|                           94 |   101 108         
                                                                                         65                             95

Chain B from PDB  Type:PROTEIN  Length:234
 aligned with ENTC3_STAAU | P0A0L5 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:236
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258      
          ENTC3_STAAU    29 SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK 264
               SCOP domains d2aq1b1 B:2-116 Staphylococcal enterotoxin C3, SEC3                                                                  d2aq1b2 B:117-235 Staphylococcal enterotoxin C3, SEC3                                                                   SCOP domains
               CATH domains 2aq1B01 B:2-31,B:118-235      2aq1B02 B:32-117  [code=2.40.50.110, no name defined]                                   2aq1B01 B:2-31,B:118-235  [code=3.10.20.120, no name defined]                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh...hhhhhhhhh...eeeeee.........eeeee..........eeeee..hhhhhhhhhh..eeeee...............--....eeeee..eee...........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh........eeeeeeeee.....eeeee.........hhhhhhhhhhhh.eee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------STAPH_STRE-----------------------------STAPH_STREP_TOXIN_2     --------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 B   2 SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNV--WWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK 235
                                    11        21        31        41        51        61        71        81        91       101  |    109       119       129       139       149       159       169       179       189       199       209       219       229      
                                                                                                                             101  |                                                                                                                                     
                                                                                                                                102

Chain C from PDB  Type:PROTEIN  Length:109
 aligned with TVB5_MOUSE | P04213 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    19        29        39        49        59        69        79        89        99       109       119   
           TVB5_MOUSE    10 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSGTGGALDTQYFGPGTRLLVL 122
               SCOP domains d2aq1c_ C: automated matches                                                                                      SCOP domains
               CATH domains 2aq1C00 C:2-117 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeee....eeeeeee.....eeeeeeee...eeeeeeee......ee......eeeeeee..eeeeee...hhhhheeeeeee-ee..eee---e...eeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 C   2 AAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILVSATPSQSSVYFCAS-GVGGTLY---FGAGTRLSVL 117
                                    11        21        31        41        51        61 ||     72        82        92 | |   101   |   114   
                                                                                        63|                           94 |   101 108         
                                                                                         65                             95

Chain D from PDB  Type:PROTEIN  Length:236
 aligned with ENTC3_STAAU | P0A0L5 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:238
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258        
          ENTC3_STAAU    29 SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 266
               SCOP domains d2aq1d1 D:2-116 Staphylococcal enterotoxin C3, SEC3                                                                  d2aq1d2 D:117-237 Staphylococcal enterotoxin C3, SEC3                                                                     SCOP domains
               CATH domains 2aq1D01 D:2-31,D:118-235      2aq1D02 D:32-117  [code=2.40.50.110, no name defined]                                   2aq1D01 D:2-31,D:118-235  [code=3.10.20.120, no name defined]                                                         -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.hhhhh...hhhhhhh.....eeeeee.........eeeee..........eeeee..hhhhhhhhh...eeeee...............--....eeeee..eee...........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeee.....eeeee.........hhhhhhhhhhhh.eee....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------STAPH_STRE-----------------------------STAPH_STREP_TOXIN_2     ----------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 D   2 SQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNV--WWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 237
                                    11        21        31        41        51        61        71        81        91       101  |    109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                             101  |                                                                                                                                       
                                                                                                                                102

Chain E from PDB  Type:PROTEIN  Length:109
 aligned with TVB5_MOUSE | P04213 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    19        29        39        49        59        69        79        89        99       109       119   
           TVB5_MOUSE    10 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSGTGGALDTQYFGPGTRLLVL 122
               SCOP domains d2aq1e_ E: automated matches                                                                                      SCOP domains
               CATH domains 2aq1E00 E:2-117 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee.....eeeeeee.....eeeeeeee...eeeeeeee......ee......eeee.....eeeeee...hhhhheeeeeee-ee..eee---e...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 E   2 AAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILVSATPSQSSVYFCAS-GVGGTLY---FGAGTRLSVL 117
                                    11        21        31        41        51        61 ||     72        82        92 | |   101   |   114   
                                                                                        63|                           94 |   101 108         
                                                                                         65                             95

Chain F from PDB  Type:PROTEIN  Length:237
 aligned with ENTC3_STAAU | P0A0L5 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:239
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257         
          ENTC3_STAAU    28 ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 266
               SCOP domains d2aq1f1 F:1-116 Staphylococcal enterotoxin C3, SEC3                                                                   d2aq1f2 F:117-237 Staphylococcal enterotoxin C3, SEC3                                                                     SCOP domains
               CATH domains 2aq1F01 F:1-31,F:118-235       2aq1F02 F:32-117  [code=2.40.50.110, no name defined]                                   2aq1F01 F:1-31,F:118-235  [code=3.10.20.120, no name defined]                                                         -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh.hhhhh...hhhhhhhhh...eeeeee.........eeee...........eeeee..hhhhhhhhh...eeeee...............--....eeeee..eee...........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh........eeeeeeeee.....eeeee.........hhhhhhhhhhhh.eee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------STAPH_STRE-----------------------------STAPH_STREP_TOXIN_2     ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 F   1 ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNV--WWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 237
                                    10        20        30        40        50        60        70        80        90       100|  |   108       118       128       138       148       158       168       178       188       198       208       218       228         
                                                                                                                              101  |                                                                                                                                       
                                                                                                                                 102

Chain G from PDB  Type:PROTEIN  Length:109
 aligned with TVB5_MOUSE | P04213 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    19        29        39        49        59        69        79        89        99       109       119   
           TVB5_MOUSE    10 AAVTQSPRSKVAVTGGKVTLSCHQTNNHDYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLILELASLSQTAVYFCASSGTGGALDTQYFGPGTRLLVL 122
               SCOP domains d2aq1g_ G: automated matches                                                                                      SCOP domains
               CATH domains 2aq1G00 G:2-117 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee.....eeeeeee.....eeeeeeee...eeeeeeee......ee......eeeeeee..eeeeee...hhhhheeeeeee-ee..eee---e...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 G   2 AAVTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILVSATPSQSSVYFCAS-GVGGTLY---FGAGTRLSVL 117
                                    11        21        31        41        51        61 ||     72        82        92 | |   101   |   114   
                                                                                        63|                           94 |   101 108         
                                                                                         65                             95

Chain H from PDB  Type:PROTEIN  Length:237
 aligned with ENTC3_STAAU | P0A0L5 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:239
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257         
          ENTC3_STAAU    28 ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 266
               SCOP domains d2aq1h1 H:1-116 Staphylococcal enterotoxin C3, SEC3                                                                   d2aq1h2 H:117-237 Staphylococcal enterotoxin C3, SEC3                                                                     SCOP domains
               CATH domains 2aq1H01 H:1-31,H:118-235       2aq1H02 H:32-117  [code=2.40.50.110, no name defined]                                   2aq1H01 H:1-31,H:118-235  [code=3.10.20.120, no name defined]                                                         -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh.........hhhhhhhhh...eeeeee.........eeee...........eeeee..hhhhhhhhh...eeeee...............--....eeeee..eee...........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeee.....eeeee.........hhhhhhhhhhhh.eee....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------STAPH_STRE-----------------------------STAPH_STREP_TOXIN_2     ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aq1 H   1 ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNV--WWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG 237
                                    10        20        30        40        50        60        70        80        90       100|  |   108       118       128       138       148       158       168       178       188       198       208       218       228         
                                                                                                                              101  |                                                                                                                                       
                                                                                                                                 102

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: [code=3.10.20.120, no name defined] (91)

House mouse (Mus musculus) (7)

1a	2aq1B01	B:2-31,B:118-235
1b	2aq1D01	D:2-31,D:118-235
1c	2aq1F01	F:1-31,F:118-235
1d	2aq1H01	H:1-31,H:118-235

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P) (1040)

Homologous Superfamily: [code=2.40.50.110, no name defined] (136)

House mouse (Mus musculus) (7)

2a	2aq1B02	B:32-117
2b	2aq1D02	D:32-117
2c	2aq1F02	F:32-117
2d	2aq1H02	H:32-117

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

3a	2aq1A00	A:2-117
3b	2aq1C00	C:2-117
3c	2aq1E00	E:2-117
3d	2aq1G00	G:2-117

(no "Pfam Domain" information available for 2AQ1)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (TVB5_MOUSE | P04213)

Chain B,D,F,H (ENTC3_STAAU | P0A0L5)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2aq1)

	Sites
(no "Sites" information available for 2aq1)

	Cis Peptide Bonds
		Ser A:7 - Pro A:8	[ RasMol ]
		Ser C:7 - Pro C:8	[ RasMol ]
		Ser E:7 - Pro E:8	[ RasMol ]
		Ser G:7 - Pro G:8	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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1jck	THE SIMILIAR STRUCTURE WITH LOW RESOLUTION AND WITHOUT MUTATION OF T-CELL RECEPTOR
2apb	THE G17E/S54N/L81S VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2apf	THE G17E/A52V/S54N/K66E/L81S VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2apt	THE G17E/S54N/K66E/Q72H/E80V/L81S/T87S/G96V VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2apv	THE G17E/A52V/S54N/Q72H/E80V/L81S/T87S/G96V VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2apw	THE G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2apx	THE G17E/A52V/S54N/K66E/Q72H/E80V/L81S/T87S/G96V VARIANT OF THE MURINE T CELL RECEPTOR V BETA 8.2 DOMAIN
2aq2	T-CELL RECEPTOR V BETA DOMAIN VARIANT (G17E/A52V/S54N/K66E/ L81S) COMPLEXED WITH SUPERANTIGEN SEC3 MUTANT
2aq3	T-CELL RECEPTOR V BETA DOMAIN VARIANT (G17E/L81S) COMPLEXED WITH SUPERANTIGEN SEC3 MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (8, 8)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 12)

CATH Domains (3, 12)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File