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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN M340H-BETA1,4-GALACTOSYLTRANSFERASE-I (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,2-MAN-ALPHA1,3-MAN-BETA-OR
 
Authors :  V. Ramasamy, B. Ramakrishnan, E. Boeggeman, D. M. Ratner, P. H. Seeberg P. K. Qasba
Date :  23 Jul 05  (Deposition) - 04 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Beta1, 4-Galactosyltransferase-I; Trisaccharide; 13Arm; Closed Conformation; Mutant, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Ramasamy, B. Ramakrishnan, E. Boeggeman, D. M. Ratner, P. H. Seeberger, P. K. Qasba
Oligosaccharide Preferences Of Beta1, 4-Galactosyltransferase-I: Crystal Structures Of Met340His Mutant Of Human Beta1, 4-Galactosyltransferase-I With A Pentasaccharide And Trisaccharides Of The N-Glycan Moiety
J. Mol. Biol. V. 353 53 2005
PubMed-ID: 16157350  |  Reference-DOI: 10.1016/J.JMB.2005.07.050

(-) Compounds

Molecule 1 - BETA-1,4-GALACTOSYLTRANSFERASE 1
    ChainsA, B, C
    EC Number2.4.1.90
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET23A
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentCATALYTIC DOMAIN, RESIDUES 126-398
    GalactoseBETA-N-ACETYLGLUCOSAMINE BETA-1,4-GALACTOSYLTRANSFERASE 1
    GeneB4GALT1, GGTB2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsN-ACETYLLACTOSAMINE SYNTHASE PART
    Other Details - SourceN-TERMINAL CARRIES T7 TAG OF 11 AMINO ACIDS FOLLOWED BY GLY, SER & ALA
    SynonymBETA-1,4-GALTASE 1;
BETA4GAL-T1;
B4GAL-T1;
UDP-

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 38)

Asymmetric Unit (9, 38)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2DIO1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3GOL8Ligand/IonGLYCEROL
4MAN3Ligand/IonALPHA-D-MANNOSE
5MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MN3Ligand/IonMANGANESE (II) ION
7NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO413Ligand/IonSULFATE ION
9UDH3Ligand/Ion6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
Biological Unit 1 (6, 11)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2DIO-1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3GOL3Ligand/IonGLYCEROL
4MAN1Ligand/IonALPHA-D-MANNOSE
5MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MN-1Ligand/IonMANGANESE (II) ION
7NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO44Ligand/IonSULFATE ION
9UDH1Ligand/Ion6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
Biological Unit 2 (6, 14)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2DIO-1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3GOL4Ligand/IonGLYCEROL
4MAN1Ligand/IonALPHA-D-MANNOSE
5MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MN-1Ligand/IonMANGANESE (II) ION
7NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO46Ligand/IonSULFATE ION
9UDH1Ligand/Ion6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
Biological Unit 3 (8, 10)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2DIO1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3GOL1Ligand/IonGLYCEROL
4MAN1Ligand/IonALPHA-D-MANNOSE
5MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MN-1Ligand/IonMANGANESE (II) ION
7NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO43Ligand/IonSULFATE ION
9UDH1Ligand/Ion6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE

(-) Sites  (38, 38)

Asymmetric Unit (38, 38)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:276 , TYR A:282 , TYR A:285 , TRP A:310 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , MAN A:406 , GOL A:417 , HOH A:842BINDING SITE FOR RESIDUE NAG A 405
02AC2SOFTWAREPHE A:356 , NAG A:405 , BMA A:407 , HOH A:842BINDING SITE FOR RESIDUE MAN A 406
03AC3SOFTWAREPHE A:356 , ILE A:359 , MAN A:406 , HOH A:827BINDING SITE FOR RESIDUE BMA A 407
04AC4SOFTWAREPHE B:276 , TYR B:282 , TYR B:285 , TRP B:310 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , MAN B:409 , GOL B:414 , HOH B:835 , HOH B:836BINDING SITE FOR RESIDUE NAG B 408
05AC5SOFTWARENAG B:408 , BMA B:410 , HOH B:835 , HOH B:836BINDING SITE FOR RESIDUE MAN B 409
06AC6SOFTWAREPHE B:356 , ILE B:359 , MAN B:409 , HOH B:624BINDING SITE FOR RESIDUE BMA B 410
07AC7SOFTWAREPHE C:276 , TYR C:282 , TYR C:285 , TRP C:310 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , MAN C:412 , HOH C:831BINDING SITE FOR RESIDUE NAG C 411
08AC8SOFTWARETYR C:282 , NAG C:411 , BMA C:413 , HOH C:831BINDING SITE FOR RESIDUE MAN C 412
09AC9SOFTWAREILE C:359 , MAN C:412BINDING SITE FOR RESIDUE BMA C 413
10BC1SOFTWAREASP A:250 , HIS A:340 , HIS A:343 , UDH A:399 , HOH A:464BINDING SITE FOR RESIDUE MN A 400
11BC2SOFTWAREASP B:250 , HIS B:340 , HIS B:343 , UDH B:401 , HOH B:453BINDING SITE FOR RESIDUE MN B 402
12BC3SOFTWAREASP C:250 , HIS C:340 , HIS C:343 , UDH C:403 , HOH C:560BINDING SITE FOR RESIDUE MN C 404
13BC4SOFTWAREGLU A:144 , PHE A:145 , ASN A:146 , ARG A:339BINDING SITE FOR RESIDUE SO4 A 422
14BC5SOFTWAREASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:552 , HOH A:673 , HOH A:677BINDING SITE FOR RESIDUE SO4 A 423
15BC6SOFTWAREARG A:267BINDING SITE FOR RESIDUE SO4 A 424
16BC7SOFTWAREARG B:267BINDING SITE FOR RESIDUE SO4 B 425
17BC8SOFTWARESER B:344 , ARG B:345BINDING SITE FOR RESIDUE SO4 B 426
18BC9SOFTWAREASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:476 , HOH C:481 , HOH C:575 , HOH C:751BINDING SITE FOR RESIDUE SO4 C 427
19CC1SOFTWAREGLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ASN C:160BINDING SITE FOR RESIDUE SO4 B 428
20CC2SOFTWAREASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:482 , HOH B:497 , HOH B:710BINDING SITE FOR RESIDUE SO4 B 429
21CC3SOFTWAREASN A:160 , PHE C:145 , ASN C:146 , ARG C:339BINDING SITE FOR RESIDUE SO4 C 430
22CC4SOFTWAREHIS C:343 , SER C:344BINDING SITE FOR RESIDUE SO4 C 431
23CC5SOFTWAREHIS B:343 , SER B:344 , HOH B:766BINDING SITE FOR RESIDUE SO4 B 432
24CC6SOFTWAREHIS A:343 , SER A:344BINDING SITE FOR RESIDUE SO4 A 433
25CC7SOFTWAREVAL B:149 , ASP B:150 , LEU B:151 , LYS B:192BINDING SITE FOR RESIDUE SO4 B 434
26CC8SOFTWAREPRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , TRP A:310 , HIS A:340 , HIS A:343 , ARG A:345 , ASP A:346 , MN A:400 , GOL A:417 , HOH A:464 , HOH A:558 , HOH A:605 , HOH A:608BINDING SITE FOR RESIDUE UDH A 399
27CC9SOFTWAREPRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ARG B:345 , ASP B:346 , MN B:402 , GOL B:414 , HOH B:453 , HOH B:466 , HOH B:499BINDING SITE FOR RESIDUE UDH B 401
28DC1SOFTWAREPRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , HIS C:343 , ARG C:345 , ASP C:346 , MN C:404 , GOL C:418 , HOH C:560 , HOH C:659 , HOH C:762BINDING SITE FOR RESIDUE UDH C 403
29DC2SOFTWAREASN C:306 , TRP C:308 , ARG C:358 , PRO C:397 , SER C:398BINDING SITE FOR RESIDUE DIO C 435
30DC3SOFTWARELYS C:237 , LEU C:374 , THR C:375 , TYR C:376 , GLN C:377 , VAL C:378 , HOH C:689BINDING SITE FOR RESIDUE MES C 436
31DC4SOFTWAREARG B:224 , TRP B:310 , GLY B:311 , GLU B:313 , ASP B:314 , UDH B:401 , NAG B:408 , HOH B:508 , HOH B:521BINDING SITE FOR RESIDUE GOL B 414
32DC5SOFTWAREPHE A:318 , MET A:326 , SER A:327 , ILE A:328 , PHE B:318 , SER B:327 , ILE B:328 , HOH B:567BINDING SITE FOR RESIDUE GOL B 415
33DC6SOFTWARESER A:368 , ASP A:369 , PHE B:184 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:534BINDING SITE FOR RESIDUE GOL B 416
34DC7SOFTWARETRP A:310 , GLY A:311 , GLU A:313 , ASP A:314 , UDH A:399 , NAG A:405 , HOH A:472 , HOH A:779BINDING SITE FOR RESIDUE GOL A 417
35DC8SOFTWAREARG C:224 , TRP C:310 , GLY C:311 , GLU C:313 , ASP C:314 , UDH C:403 , HOH C:729BINDING SITE FOR RESIDUE GOL C 418
36DC9SOFTWAREASN B:306 , TRP B:308 , ARG B:358 , SER B:398BINDING SITE FOR RESIDUE GOL B 419
37EC1SOFTWARETHR A:220 , ASP A:393 , GLY A:395 , HOH A:437 , HOH A:750 , HOH A:841BINDING SITE FOR RESIDUE GOL A 420
38EC2SOFTWAREGLN A:296 , THR A:299 , HOH A:617 , HOH A:628 , HOH A:679BINDING SITE FOR RESIDUE GOL A 421

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:130 -A:172
2A:243 -A:262
3B:130 -B:172
4B:243 -B:262
5C:130 -C:172
6C:243 -C:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AES)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 3)

Asymmetric Unit (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_054020H257RB4GT1_HUMANPolymorphism9169A/B/CH257R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_054020H257RB4GT1_HUMANPolymorphism9169AH257R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_054020H257RB4GT1_HUMANPolymorphism9169BH257R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_054020H257RB4GT1_HUMANPolymorphism9169CH257R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AES)

(-) Exons   (6, 18)

Asymmetric Unit (6, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003797311ENSE00001482335chr9:33167354-33166756599B4GT1_HUMAN1-1381383A:127-138
B:127-138
C:127-138
12
12
12
1.2ENST000003797312ENSE00000695817chr9:33135422-33135187236B4GT1_HUMAN138-216793A:138-216
B:138-216
C:138-216
79
79
79
1.3ENST000003797313ENSE00000695815chr9:33120604-33120417188B4GT1_HUMAN217-279633A:217-279
B:217-279
C:217-279
63
63
63
1.4ENST000003797314ENSE00000695812chr9:33116111-33115989123B4GT1_HUMAN279-320423A:279-320
B:279-320
C:279-320
42
42
42
1.5ENST000003797315ENSE00000695809chr9:33113876-33113772105B4GT1_HUMAN320-355363A:320-355
B:320-355
C:320-355
36
36
36
1.6ENST000003797316ENSE00001482317chr9:33113584-331106352950B4GT1_HUMAN355-398443A:355-398
B:355-398
C:355-398
44
44
44

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with B4GT1_HUMAN | P15291 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:272
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  
          B4GT1_HUMAN   127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
               SCOP domains d2aesa_ A: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2aesA00 A:127-398 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhh.......ee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhh...eeeee...eee.............ee...ee.hhh...........eeeeehhhhhhh...........hhhhhhhhhhhhh............eeee.............hhhhhhhhhhhhh...hhhhh..eeeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1    ------------------------------------------------------------------------------Exon 1.3  PDB: A:217-279 UniProt: 217-279                      ----------------------------------------Exon 1.5  PDB: A:320-355            ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------Exon 1.2  PDB: A:138-216 UniProt: 138-216                                      --------------------------------------------------------------Exon 1.4  PDB: A:279-320 UniProt: 279-320 ----------------------------------Exon 1.6  PDB: A:355-398 UniProt: 355-398    Transcript 1 (2)
                 2aes A 127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  

Chain B from PDB  Type:PROTEIN  Length:272
 aligned with B4GT1_HUMAN | P15291 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:272
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  
          B4GT1_HUMAN   127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
               SCOP domains d2aesb_ B: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2aesB00 B:127-398 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhh.......ee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhh...eeeee...eee.............ee...ee.hhh...........eeeeehhhhhhh...........hhhhhhhhhhhhh............eeee.............hhhhhhhhhhhhh...hhhhh..eeeeeeee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1    ------------------------------------------------------------------------------Exon 1.3  PDB: B:217-279 UniProt: 217-279                      ----------------------------------------Exon 1.5  PDB: B:320-355            ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------Exon 1.2  PDB: B:138-216 UniProt: 138-216                                      --------------------------------------------------------------Exon 1.4  PDB: B:279-320 UniProt: 279-320 ----------------------------------Exon 1.6  PDB: B:355-398 UniProt: 355-398    Transcript 1 (2)
                 2aes B 127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  

Chain C from PDB  Type:PROTEIN  Length:272
 aligned with B4GT1_HUMAN | P15291 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:272
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  
          B4GT1_HUMAN   127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
               SCOP domains d2aesc_ C: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2aesC00 C:127-398 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhh.......ee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh..eeeeeeeee......hhhhhhhhhhhhhhhhh...eeeee...eee.............ee...ee.hhh...........eeeeehhhhhhh...........hhhhhhhhhhhhh............eeee.............hhhhhhhhhhhhh...hhhhh..eeeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1    ------------------------------------------------------------------------------Exon 1.3  PDB: C:217-279 UniProt: 217-279                      ----------------------------------------Exon 1.5  PDB: C:320-355            ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------Exon 1.2  PDB: C:138-216 UniProt: 138-216                                      --------------------------------------------------------------Exon 1.4  PDB: C:279-320 UniProt: 279-320 ----------------------------------Exon 1.6  PDB: C:355-398 UniProt: 355-398    Transcript 1 (2)
                 2aes C 127 LPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS 398
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AES)

(-) Gene Ontology  (60, 60)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (B4GT1_HUMAN | P15291)
molecular function
    GO:0003945    N-acetyllactosamine synthase activity    Catalysis of the reaction: UDP-galactose + N-acetyl-D-glucosamine = UDP + N-acetyllactosamine.
    GO:0035250    UDP-galactosyltransferase activity    Catalysis of the transfer of a galactose group from UDP-galactose to an acceptor molecule.
    GO:0043014    alpha-tubulin binding    Interacting selectively and non-covalently with the microtubule constituent protein alpha-tubulin.
    GO:0003831    beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity    Catalysis of the reaction: UDP-galactose + N-acetyl-beta-D-glucosaminylglycopeptide = UDP + beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminylglycopeptide.
    GO:0048487    beta-tubulin binding    Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin.
    GO:0008092    cytoskeletal protein binding    Interacting selectively and non-covalently with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton).
    GO:0008378    galactosyltransferase activity    Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid.
    GO:0004461    lactose synthase activity    Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0002526    acute inflammatory response    Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.
    GO:0060055    angiogenesis involved in wound healing    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.
    GO:0007339    binding of sperm to zona pellucida    The process in which the sperm binds to the zona pellucida glycoprotein layer of the egg. The process begins with the attachment of the sperm plasma membrane to the zona pellucida and includes attachment of the acrosome inner membrane to the zona pellucida after the acrosomal reaction takes place.
    GO:0048754    branching morphogenesis of an epithelial tube    The process in which the anatomical structures of branches in an epithelial tube are generated and organized. A tube is a long hollow cylinder.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0045136    development of secondary sexual characteristics    The process whose specific outcome is the progression of the secondary sexual characteristics over time, from their formation to the mature structures. In humans, these include growth of axillary, chest, and pubic hair, voice changes, testicular/penile enlargement, breast development and menstrual periods. Development occurs in response to sex hormone secretion.
    GO:0002064    epithelial cell development    The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0006012    galactose metabolic process    The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
    GO:0009101    glycoprotein biosynthetic process    The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
    GO:0018146    keratan sulfate biosynthetic process    The chemical reactions and pathways resulting in the formation of keratan sulfate, a glycosaminoglycan with repeat units consisting of beta-1,4-linked D-galactopyranosyl-beta-(1,4)-N-acetyl-D-glucosamine 6-sulfate and with variable amounts of fucose, sialic acid and mannose units; keratan sulfate chains are covalently linked by a glycosidic attachment through the trisaccharide galactosyl-galactosyl-xylose to peptidyl-threonine or serine residues.
    GO:0005989    lactose biosynthetic process    The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0030879    mammary gland development    The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. Its development starts with the formation of the mammary line and ends as the mature gland cycles between nursing and weaning stages.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0009312    oligosaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
    GO:0007341    penetration of zona pellucida    The infiltration by sperm of the zona pellucida to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0060058    positive regulation of apoptotic process involved in mammary gland involution    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process of mammary epithelial cells during mammary gland involution.
    GO:0060054    positive regulation of epithelial cell proliferation involved in wound healing    Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.
    GO:0006487    protein N-linked glycosylation    A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
    GO:0006486    protein glycosylation    A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
    GO:0060046    regulation of acrosome reaction    Any process that modulates the frequency, rate or extent of the acrosome reaction.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0051270    regulation of cellular component movement    Any process that modulates the frequency, rate or extent of the movement of a cellular component.
    GO:0009611    response to wounding    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
    GO:0042060    wound healing    The series of events that restore integrity to a damaged tissue, following an injury.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0032580    Golgi cisterna membrane    The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0000138    Golgi trans cisterna    The Golgi cisterna farthest from the endoplasmic reticulum; the final processing compartment through which proteins pass before exiting the Golgi apparatus; the compartment in which N-linked protein glycosylation is completed.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0030057    desmosome    A cell-cell junction in which: on the cytoplasmic surface of each interacting plasma membrane is a dense plaque composed of a mixture of intracellular anchor proteins; a bundle of keratin intermediate filaments is attached to the surface of each plaque; transmembrane adhesion proteins of the cadherin family bind to the plaques and interact through their extracellular domains to hold the adjacent membranes together by a Ca2+-dependent mechanism.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0030112    glycocalyx    A viscous, carbohydrate rich layer at the outermost periphery of a cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B4GT1_HUMAN | P152912ae7 2aec 2agd 2ah9 2fy7 2fya 2fyb 3ee5 4ee3 4ee4 4ee5 4eea 4eeg 4eem 4eeo 4l41

(-) Related Entries Specified in the PDB File

1o0r BOVINE BETA1,4-GALACTOSYLTRANSFERASE-I WITH UDP-GAL AND MN
1tvy BOVINE M344H-BETA1,4-GALACTOSYLTRANSFERASE-I WITH UDP-GAL AND MN
1tw1 BOVINE M344H-BETA1,4-GALACTOSYLTRANSFERASE-I WITH UDP-GAL AND MG
1tw5 BOVINE M344H-BETA1,4-GALACTOSYLTRANSFERASE-I WITH CHITOBIOSE
2ae7
2aec
2agd
2ah9