Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDASE (TM1410) FROM THERMOTOGA MARITIMA AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  13 Jul 05  (Deposition) - 26 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1410) From Thermotoga Maritima At 2. 20 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM1410
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: DL41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1410
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 73)

Asymmetric Unit (3, 73)
No.NameCountTypeFull Name
1GOL37Ligand/IonGLYCEROL
2MSE30Mod. Amino AcidSELENOMETHIONINE
3UNL6Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 13)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 16)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (3, 10)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 4 (3, 11)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 5 (3, 10)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 6 (3, 13)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGOL A:14 , LEU A:41 , GLN A:42 , ASP A:60 , TYR A:89 , GLU A:96 , TYR A:98 , ARG A:99 , HOH A:392 , HOH A:406 , HOH A:464BINDING SITE FOR RESIDUE UNL A 1
02AC2SOFTWAREGOL B:7 , LEU B:41 , GLN B:42 , ASP B:60 , TYR B:89 , GLU B:96 , TYR B:98 , ARG B:99 , GLU B:298 , HOH B:416 , HOH B:423BINDING SITE FOR RESIDUE UNL B 2
03AC3SOFTWARELEU C:41 , GLN C:42 , ASP C:60 , GLY C:65 , TYR C:89 , GLU C:96 , TYR C:98 , ARG C:99 , GLU C:298 , GOL C:325 , HOH C:430 , HOH C:436BINDING SITE FOR RESIDUE UNL C 3
04AC4SOFTWARELEU D:41 , GLN D:42 , ASP D:60 , GLY D:65 , TYR D:89 , TYR D:98 , ARG D:99 , GLU D:298 , HOH D:345 , HOH D:412 , HOH D:473 , HOH D:479BINDING SITE FOR RESIDUE UNL D 4
05AC5SOFTWAREGOL E:9 , LEU E:41 , GLN E:42 , ASP E:60 , ASP E:64 , TYR E:89 , TYR E:98 , ARG E:99 , GLU E:298 , HOH E:378BINDING SITE FOR RESIDUE UNL E 5
06AC6SOFTWAREGOL F:10 , LEU F:41 , GLN F:42 , ASP F:60 , ASP F:64 , GLY F:65 , TYR F:89 , GLU F:96 , TYR F:98 , ARG F:99 , GLU F:298 , HOH F:453 , HOH F:509BINDING SITE FOR RESIDUE UNL F 6
07AC7SOFTWAREUNL B:2 , TYR B:39 , TRP B:121 , ASP B:156 , ARG B:157 , GLN B:202 , GLU B:225BINDING SITE FOR RESIDUE GOL B 7
08AC8SOFTWARETRP B:106 , TYR B:107 , THR B:110 , GLY B:115BINDING SITE FOR RESIDUE GOL B 8
09AC9SOFTWAREUNL E:5 , TYR E:39 , TRP E:121 , ASP E:156 , GLN E:202 , GLU E:225 , HOH E:370 , HOH E:462BINDING SITE FOR RESIDUE GOL E 9
10BC1SOFTWAREUNL F:6 , TYR F:39 , TRP F:121 , ASP F:156 , GLN F:202 , GLU F:225 , HOH F:376 , HOH F:468BINDING SITE FOR RESIDUE GOL F 10
11BC2SOFTWARETYR D:39 , TRP D:121 , ASP D:156 , ARG D:157 , GLN D:202 , GLU D:225BINDING SITE FOR RESIDUE GOL D 11
12BC3SOFTWAREASN A:203 , GLU A:225 , ASN A:226 , ARG A:243BINDING SITE FOR RESIDUE GOL A 12
13BC4SOFTWAREGLN A:166 , GLU A:167 , GLY A:168 , HOH A:382 , ASP D:143 , ARG D:193 , HOH D:440BINDING SITE FOR RESIDUE GOL A 13
14BC5SOFTWAREUNL A:1 , TYR A:39 , ASP A:156 , GLN A:202 , GLU A:225 , TYR A:262 , HOH A:475BINDING SITE FOR RESIDUE GOL A 14
15BC6SOFTWAREASN D:203 , ASN D:226 , ARG D:243 , GOL D:325BINDING SITE FOR RESIDUE GOL D 324
16BC7SOFTWAREGLU D:225 , ASN D:226 , TYR D:262 , GOL D:324BINDING SITE FOR RESIDUE GOL D 325
17BC8SOFTWAREASN F:203 , GLU F:225 , ASN F:226 , ARG F:243BINDING SITE FOR RESIDUE GOL F 324
18BC9SOFTWAREASP C:264 , ASP C:265 , ARG C:294 , SER C:295 , ASP C:296BINDING SITE FOR RESIDUE GOL C 324
19CC1SOFTWAREASP B:143 , HOH B:402 , ALA E:165 , GLN E:166 , GLY E:168BINDING SITE FOR RESIDUE GOL E 324
20CC2SOFTWAREASN B:203 , GLU B:225 , ASN B:226BINDING SITE FOR RESIDUE GOL B 324
21CC3SOFTWARESER B:217BINDING SITE FOR RESIDUE GOL B 325
22CC4SOFTWAREGLN B:166 , GLU B:167 , GLY B:168 , ASP C:143 , ARG C:193BINDING SITE FOR RESIDUE GOL B 326
23CC5SOFTWAREGLU A:70 , ARG A:144BINDING SITE FOR RESIDUE GOL A 324
24CC6SOFTWAREGLU D:162 , GLN D:166 , HOH D:360BINDING SITE FOR RESIDUE GOL D 326
25CC7SOFTWARELEU A:114 , GLY A:115 , TYR A:125 , HOH A:472BINDING SITE FOR RESIDUE GOL A 325
26CC8SOFTWAREARG F:193 , HOH F:417BINDING SITE FOR RESIDUE GOL F 325
27CC9SOFTWAREASN E:203 , GLU E:225 , ASN E:226 , ARG E:243 , HOH E:459BINDING SITE FOR RESIDUE GOL E 325
28DC1SOFTWAREGLU F:306BINDING SITE FOR RESIDUE GOL F 326
29DC2SOFTWAREGLU E:55 , ALA E:82 , GLY E:83BINDING SITE FOR RESIDUE GOL E 326
30DC3SOFTWARETHR F:110 , LEU F:114 , GLY F:115 , TYR F:125 , HOH F:449BINDING SITE FOR RESIDUE GOL F 327
31DC4SOFTWAREUNL C:3 , TYR C:39 , ASP C:156 , ARG C:157 , GLN C:202 , GLU C:225 , HOH C:423BINDING SITE FOR RESIDUE GOL C 325
32DC5SOFTWAREASP A:143 , ARG A:193 , GLN F:166BINDING SITE FOR RESIDUE GOL A 326
33DC6SOFTWAREPHE B:270BINDING SITE FOR RESIDUE GOL A 327
34DC7SOFTWARETRP B:30 , PHE B:31 , MSE B:32 , PRO B:33BINDING SITE FOR RESIDUE GOL B 327
35DC8SOFTWAREGLU B:55 , ALA B:82BINDING SITE FOR RESIDUE GOL B 328
36DC9SOFTWAREALA B:120 , LEU B:297BINDING SITE FOR RESIDUE GOL B 329
37EC1SOFTWAREPHE B:126 , ARG B:157 , ASP B:159 , GLU B:162 , TYR B:163BINDING SITE FOR RESIDUE GOL B 330
38EC2SOFTWAREARG B:173 , ASP B:209 , PHE B:210BINDING SITE FOR RESIDUE GOL B 331
39EC3SOFTWAREASN C:203 , GLU C:225 , ASN C:226 , ARG C:243 , GOL C:327BINDING SITE FOR RESIDUE GOL C 326
40EC4SOFTWARETRP C:121 , GLU C:225 , ASN C:226 , LEU C:230 , TYR C:262 , GOL C:326BINDING SITE FOR RESIDUE GOL C 327
41EC5SOFTWAREGLY D:53 , PHE D:54 , ALA D:82 , GLY D:83BINDING SITE FOR RESIDUE GOL D 327
42EC6SOFTWAREGLU F:55 , ALA F:82 , GLY F:83BINDING SITE FOR RESIDUE GOL F 328
43EC7SOFTWAREGLU F:185BINDING SITE FOR RESIDUE GOL F 329

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AAM)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gln A:309 -Pro A:310
2Gln B:309 -Pro B:310
3Gln C:309 -Pro C:310
4Gln D:309 -Pro D:310
5Gln E:309 -Pro E:310
6Gln F:309 -Pro F:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AAM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AAM)

(-) Exons   (0, 0)

(no "Exon" information available for 2AAM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:285
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
          Y1410_THEMA    28 EGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPE 312
               SCOP domains d2aama1 A:28-312 Hypothetical protein TM1410                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee.......hhhhhh....eeeee..eeeeeee...hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhh.eeeeeee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam A  28 EGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPE 312
                                |   37        47        57        67        77 |      87        97       107       117       127       137       147       157       167       177 |     187       197       207       217       227       237       247       257       267       277       287       297    |  307     
                                |                                             79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE      
                               32-MSE                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:287
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:287
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       
          Y1410_THEMA    27 TEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPEA 313
               SCOP domains d2aamb_ B: Hypothetical protein TM1410                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee.......hhhhhh....eeee......eeee...hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhh.eeeeeee................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam B  27 TEGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPEA 313
                                 |  36        46        56        66        76  |     86        96       106       116       126       136       146       156       166       176  |    186       196|      206       216       226       236       246       256       266       276       286       296     | 306       
                                32-MSE                                         79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE       


Chain C from PDB  Type:PROTEIN  Length:286
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:286
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      
          Y1410_THEMA    27 TEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPE 312
               SCOP domains d2aamc_ C: Hypothetical protein TM1410                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee......hhhhhh.....eeeee..eeeeeee...hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhh.eeeeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam C  27 TEGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPE 312
                                 |  36        46        56        66        76  |     86        96       106       116       126       136       146       156       166       176  |    186       196|      206       216       226       236       246       256       266       276       286       296     | 306      
                                32-MSE                                         79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE      


Chain D from PDB  Type:PROTEIN  Length:286
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:286
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      
          Y1410_THEMA    27 TEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPE 312
               SCOP domains d2aamd_ D: Hypothetical protein TM1410                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee.......hhhhhh....eeeee..eeeeeee...hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhhhhhhh.eeeeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam D  27 TEGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPE 312
                                 |  36        46        56        66        76  |     86        96       106       116       126       136       146       156       166       176  |    186       196|      206       216       226       236       246       256       266       276       286       296     | 306      
                                32-MSE                                         79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE      


Chain E from PDB  Type:PROTEIN  Length:287
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:287
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       
          Y1410_THEMA    27 TEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPEA 313
               SCOP domains d2aame_ E: Hypothetical protein TM1410                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee......hhhhhh.....eeee......eeee...hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhh..eeeeeee................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam E  27 TEGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPEA 313
                                 |  36        46        56        66        76  |     86        96       106       116       126       136       146       156       166       176  |    186       196|      206       216       226       236       246       256       266       276       286       296     | 306       
                                32-MSE                                         79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE       


Chain F from PDB  Type:PROTEIN  Length:286
 aligned with Y1410_THEMA | Q9X1D0 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:286
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      
          Y1410_THEMA    27 TEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPE 312
               SCOP domains d2aamf_ F: Hypothetical protein TM1410                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....hhhhhhh....eeee......hhhhh.hhhhhhhhhhh..eeeeeee..eee.......hhhhhh....eeee......eeee...hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhh.eeeee...ee..ee.hhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhhhhhhhhhhhhhhh.eeeeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aam F  27 TEGWFmPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKImVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKmINFVLEIAEYVRERKPDmLIIPQNGENILDFDDGQLASTVSGWAVENLFYLKTIPLEENETKSRLEYLIRLNRKGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEmNVIEGIQPPE 312
                                 |  36        46        56        66        76  |     86        96       106       116       126       136       146       156       166       176  |    186       196|      206       216       226       236       246       256       266       276       286       296     | 306      
                                32-MSE                                         79-MSE                                                                                             179-MSE           197-MSE                                                                                                  302-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AAM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2AAM)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln A:309 - Pro A:310   [ RasMol ]  
    Gln B:309 - Pro B:310   [ RasMol ]  
    Gln C:309 - Pro C:310   [ RasMol ]  
    Gln D:309 - Pro D:310   [ RasMol ]  
    Gln E:309 - Pro E:310   [ RasMol ]  
    Gln F:309 - Pro F:310   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2aam
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Y1410_THEMA | Q9X1D0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Y1410_THEMA | Q9X1D0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2AAM)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2AAM)