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2AAM
Asym. Unit
Info
Asym.Unit (320 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (56 KB)
Biol.Unit 5 (56 KB)
Biol.Unit 6 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDASE (TM1410) FROM THERMOTOGA MARITIMA AT 2.20 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
13 Jul 05 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1410) From Thermotoga Maritima At 2. 20 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(3, 73)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1aa: GLYCEROL (GOLaa)
1ab: GLYCEROL (GOLab)
1ac: GLYCEROL (GOLac)
1ad: GLYCEROL (GOLad)
1ae: GLYCEROL (GOLae)
1af: GLYCEROL (GOLaf)
1ag: GLYCEROL (GOLag)
1ah: GLYCEROL (GOLah)
1ai: GLYCEROL (GOLai)
1aj: GLYCEROL (GOLaj)
1ak: GLYCEROL (GOLak)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
1z: GLYCEROL (GOLz)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: UNKNOWN LIGAND (UNLa)
3b: UNKNOWN LIGAND (UNLb)
3c: UNKNOWN LIGAND (UNLc)
3d: UNKNOWN LIGAND (UNLd)
3e: UNKNOWN LIGAND (UNLe)
3f: UNKNOWN LIGAND (UNLf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
37
Ligand/Ion
GLYCEROL
2
MSE
30
Mod. Amino Acid
SELENOMETHIONINE
3
UNL
6
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GOL A:14 , LEU A:41 , GLN A:42 , ASP A:60 , TYR A:89 , GLU A:96 , TYR A:98 , ARG A:99 , HOH A:392 , HOH A:406 , HOH A:464
BINDING SITE FOR RESIDUE UNL A 1
02
AC2
SOFTWARE
GOL B:7 , LEU B:41 , GLN B:42 , ASP B:60 , TYR B:89 , GLU B:96 , TYR B:98 , ARG B:99 , GLU B:298 , HOH B:416 , HOH B:423
BINDING SITE FOR RESIDUE UNL B 2
03
AC3
SOFTWARE
LEU C:41 , GLN C:42 , ASP C:60 , GLY C:65 , TYR C:89 , GLU C:96 , TYR C:98 , ARG C:99 , GLU C:298 , GOL C:325 , HOH C:430 , HOH C:436
BINDING SITE FOR RESIDUE UNL C 3
04
AC4
SOFTWARE
LEU D:41 , GLN D:42 , ASP D:60 , GLY D:65 , TYR D:89 , TYR D:98 , ARG D:99 , GLU D:298 , HOH D:345 , HOH D:412 , HOH D:473 , HOH D:479
BINDING SITE FOR RESIDUE UNL D 4
05
AC5
SOFTWARE
GOL E:9 , LEU E:41 , GLN E:42 , ASP E:60 , ASP E:64 , TYR E:89 , TYR E:98 , ARG E:99 , GLU E:298 , HOH E:378
BINDING SITE FOR RESIDUE UNL E 5
06
AC6
SOFTWARE
GOL F:10 , LEU F:41 , GLN F:42 , ASP F:60 , ASP F:64 , GLY F:65 , TYR F:89 , GLU F:96 , TYR F:98 , ARG F:99 , GLU F:298 , HOH F:453 , HOH F:509
BINDING SITE FOR RESIDUE UNL F 6
07
AC7
SOFTWARE
UNL B:2 , TYR B:39 , TRP B:121 , ASP B:156 , ARG B:157 , GLN B:202 , GLU B:225
BINDING SITE FOR RESIDUE GOL B 7
08
AC8
SOFTWARE
TRP B:106 , TYR B:107 , THR B:110 , GLY B:115
BINDING SITE FOR RESIDUE GOL B 8
09
AC9
SOFTWARE
UNL E:5 , TYR E:39 , TRP E:121 , ASP E:156 , GLN E:202 , GLU E:225 , HOH E:370 , HOH E:462
BINDING SITE FOR RESIDUE GOL E 9
10
BC1
SOFTWARE
UNL F:6 , TYR F:39 , TRP F:121 , ASP F:156 , GLN F:202 , GLU F:225 , HOH F:376 , HOH F:468
BINDING SITE FOR RESIDUE GOL F 10
11
BC2
SOFTWARE
TYR D:39 , TRP D:121 , ASP D:156 , ARG D:157 , GLN D:202 , GLU D:225
BINDING SITE FOR RESIDUE GOL D 11
12
BC3
SOFTWARE
ASN A:203 , GLU A:225 , ASN A:226 , ARG A:243
BINDING SITE FOR RESIDUE GOL A 12
13
BC4
SOFTWARE
GLN A:166 , GLU A:167 , GLY A:168 , HOH A:382 , ASP D:143 , ARG D:193 , HOH D:440
BINDING SITE FOR RESIDUE GOL A 13
14
BC5
SOFTWARE
UNL A:1 , TYR A:39 , ASP A:156 , GLN A:202 , GLU A:225 , TYR A:262 , HOH A:475
BINDING SITE FOR RESIDUE GOL A 14
15
BC6
SOFTWARE
ASN D:203 , ASN D:226 , ARG D:243 , GOL D:325
BINDING SITE FOR RESIDUE GOL D 324
16
BC7
SOFTWARE
GLU D:225 , ASN D:226 , TYR D:262 , GOL D:324
BINDING SITE FOR RESIDUE GOL D 325
17
BC8
SOFTWARE
ASN F:203 , GLU F:225 , ASN F:226 , ARG F:243
BINDING SITE FOR RESIDUE GOL F 324
18
BC9
SOFTWARE
ASP C:264 , ASP C:265 , ARG C:294 , SER C:295 , ASP C:296
BINDING SITE FOR RESIDUE GOL C 324
19
CC1
SOFTWARE
ASP B:143 , HOH B:402 , ALA E:165 , GLN E:166 , GLY E:168
BINDING SITE FOR RESIDUE GOL E 324
20
CC2
SOFTWARE
ASN B:203 , GLU B:225 , ASN B:226
BINDING SITE FOR RESIDUE GOL B 324
21
CC3
SOFTWARE
SER B:217
BINDING SITE FOR RESIDUE GOL B 325
22
CC4
SOFTWARE
GLN B:166 , GLU B:167 , GLY B:168 , ASP C:143 , ARG C:193
BINDING SITE FOR RESIDUE GOL B 326
23
CC5
SOFTWARE
GLU A:70 , ARG A:144
BINDING SITE FOR RESIDUE GOL A 324
24
CC6
SOFTWARE
GLU D:162 , GLN D:166 , HOH D:360
BINDING SITE FOR RESIDUE GOL D 326
25
CC7
SOFTWARE
LEU A:114 , GLY A:115 , TYR A:125 , HOH A:472
BINDING SITE FOR RESIDUE GOL A 325
26
CC8
SOFTWARE
ARG F:193 , HOH F:417
BINDING SITE FOR RESIDUE GOL F 325
27
CC9
SOFTWARE
ASN E:203 , GLU E:225 , ASN E:226 , ARG E:243 , HOH E:459
BINDING SITE FOR RESIDUE GOL E 325
28
DC1
SOFTWARE
GLU F:306
BINDING SITE FOR RESIDUE GOL F 326
29
DC2
SOFTWARE
GLU E:55 , ALA E:82 , GLY E:83
BINDING SITE FOR RESIDUE GOL E 326
30
DC3
SOFTWARE
THR F:110 , LEU F:114 , GLY F:115 , TYR F:125 , HOH F:449
BINDING SITE FOR RESIDUE GOL F 327
31
DC4
SOFTWARE
UNL C:3 , TYR C:39 , ASP C:156 , ARG C:157 , GLN C:202 , GLU C:225 , HOH C:423
BINDING SITE FOR RESIDUE GOL C 325
32
DC5
SOFTWARE
ASP A:143 , ARG A:193 , GLN F:166
BINDING SITE FOR RESIDUE GOL A 326
33
DC6
SOFTWARE
PHE B:270
BINDING SITE FOR RESIDUE GOL A 327
34
DC7
SOFTWARE
TRP B:30 , PHE B:31 , MSE B:32 , PRO B:33
BINDING SITE FOR RESIDUE GOL B 327
35
DC8
SOFTWARE
GLU B:55 , ALA B:82
BINDING SITE FOR RESIDUE GOL B 328
36
DC9
SOFTWARE
ALA B:120 , LEU B:297
BINDING SITE FOR RESIDUE GOL B 329
37
EC1
SOFTWARE
PHE B:126 , ARG B:157 , ASP B:159 , GLU B:162 , TYR B:163
BINDING SITE FOR RESIDUE GOL B 330
38
EC2
SOFTWARE
ARG B:173 , ASP B:209 , PHE B:210
BINDING SITE FOR RESIDUE GOL B 331
39
EC3
SOFTWARE
ASN C:203 , GLU C:225 , ASN C:226 , ARG C:243 , GOL C:327
BINDING SITE FOR RESIDUE GOL C 326
40
EC4
SOFTWARE
TRP C:121 , GLU C:225 , ASN C:226 , LEU C:230 , TYR C:262 , GOL C:326
BINDING SITE FOR RESIDUE GOL C 327
41
EC5
SOFTWARE
GLY D:53 , PHE D:54 , ALA D:82 , GLY D:83
BINDING SITE FOR RESIDUE GOL D 327
42
EC6
SOFTWARE
GLU F:55 , ALA F:82 , GLY F:83
BINDING SITE FOR RESIDUE GOL F 328
43
EC7
SOFTWARE
GLU F:185
BINDING SITE FOR RESIDUE GOL F 329
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2aama1 (A:28-312)
1b: SCOP_d2aamb_ (B:)
1c: SCOP_d2aamc_ (C:)
1d: SCOP_d2aamd_ (D:)
1e: SCOP_d2aame_ (E:)
1f: SCOP_d2aamf_ (F:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
TM1410-like
(1)
Protein domain
:
Hypothetical protein TM1410
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d2aama1
A:28-312
1b
d2aamb_
B:
1c
d2aamc_
C:
1d
d2aamd_
D:
1e
d2aame_
E:
1f
d2aamf_
F:
[
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]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (320 KB)
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