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(-) Description

Title :  2.1 ANGSTROM X-RAY CRYSTAL STRUCTURE OF LYSINE-2,3-AMINOMUTASE FROM CLOSTRIDIUM SUBTERMINALE SB4, WITH MICHAELIS ANALOG (L-ALPHA-LYSINE EXTERNAL ALDIMINE FORM OF PYRIDOXAL-5'-PHOSPHATE).
 
Authors :  B. W. Lepore, F. J. Ruzicka, P. A. Frey, D. Ringe
Date :  30 Jun 05  (Deposition) - 04 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Radical Sam, Four-Iron-Four-Sulfur Cluster, 4Fe4S, Fs4, Sam, S- Adenosylmethionine, Alpha-Beta Channel, Pyridoxal-5'-Phosphate, External Aldimine, Michaelis Analog, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. W. Lepore, F. J. Ruzicka, P. A. Frey, D. Ringe
The X-Ray Crystal Structure Of Lysine-2, 3-Aminomutase From Clostridium Subterminale.
Proc. Natl. Acad. Sci. Usa V. 102 13819 2005
PubMed-ID: 16166264  |  Reference-DOI: 10.1073/PNAS.0505726102

(-) Compounds

Molecule 1 - L-LYSINE 2,3-AMINOMUTASE
    Chains: A, B, C, D
    EC Number: 5.4.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PET21A(+)
    Gene: KAMA
    Organism Scientific: CLOSTRIDIUM SUBTERMINALE
    Organism Taxid: 1550

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 60)

Asymmetric/Biological Unit (7, 60)
No.NameCountTypeFull Name
1LYS4Mod. Amino AcidLYSINE
2MSE36Mod. Amino AcidSELENOMETHIONINE
3PLP4Ligand/IonPYRIDOXAL-5'-PHOSPHATE
4SAM4Ligand/IonS-ADENOSYLMETHIONINE
5SF44Ligand/IonIRON/SULFUR CLUSTER
6SO44Ligand/IonSULFATE ION
7ZN4Ligand/IonZINC ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:268 , CYS B:375 , CYS B:377 , CYS B:380BINDING SITE FOR RESIDUE ZN A 421
02AC2SOFTWAREHIS A:111 , TYR A:113 , ARG D:409BINDING SITE FOR RESIDUE SO4 A 592
03AC3SOFTWARECYS A:375 , CYS A:377 , CYS A:380 , CYS B:268BINDING SITE FOR RESIDUE ZN B 421
04AC4SOFTWAREARG B:409 , HIS C:111 , ARG C:112 , TYR C:113BINDING SITE FOR RESIDUE SO4 C 593
05AC5SOFTWARECYS C:268 , CYS D:375 , CYS D:377 , CYS D:380BINDING SITE FOR RESIDUE ZN C 421
06AC6SOFTWAREARG A:409 , HIS D:111 , ARG D:112 , TYR D:113BINDING SITE FOR RESIDUE SO4 D 494
07AC7SOFTWARECYS C:375 , CYS C:377 , CYS C:380 , CYS D:268BINDING SITE FOR RESIDUE ZN D 421
08AC8SOFTWAREHIS B:111 , ARG B:112 , TYR B:113 , ARG C:409BINDING SITE FOR RESIDUE SO4 B 495
09AC9SOFTWAREHIS A:131 , THR A:133 , ARG A:134 , SER A:169 , GLY A:171 , HIS A:230 , GLN A:258 , VAL A:260 , TYR A:290 , GLN A:291 , CYS A:292 , ASP A:293 , LEU A:298 , SF4 A:418 , LYS A:420 , HOH A:603BINDING SITE FOR RESIDUE SAM A 417
10BC1SOFTWAREHIS B:131 , THR B:133 , ARG B:134 , SER B:169 , GLY B:171 , GLY B:200 , HIS B:230 , GLN B:258 , VAL B:260 , TYR B:290 , GLN B:291 , CYS B:292 , ASP B:293 , LEU B:298 , SF4 B:418 , LYS B:420 , HOH B:524BINDING SITE FOR RESIDUE SAM B 417
11BC2SOFTWAREHIS C:131 , THR C:133 , ARG C:134 , SER C:169 , GLY C:171 , HIS C:230 , GLN C:258 , VAL C:260 , TYR C:290 , GLN C:291 , CYS C:292 , ASP C:293 , LEU C:298 , SF4 C:418 , LYS C:420 , HOH C:627BINDING SITE FOR RESIDUE SAM C 417
12BC3SOFTWAREHIS D:131 , THR D:133 , ARG D:134 , SER D:169 , GLY D:171 , HIS D:230 , GLN D:258 , VAL D:260 , TYR D:290 , GLN D:291 , CYS D:292 , ASP D:293 , LEU D:298 , SF4 D:418 , LYS D:420 , HOH D:533BINDING SITE FOR RESIDUE SAM D 417
13BC4SOFTWARELEU A:118 , ARG A:134 , LEU A:167 , SER A:169 , TYR A:290 , ASP A:293 , ASP A:330 , SAM A:417 , PLP A:419 , HOH A:625BINDING SITE FOR RESIDUE LYS A 420
14BC5SOFTWARETHR A:110 , TYR A:113 , ARG A:116 , LEU A:118 , ARG A:198 , TYR A:287 , TYR A:288 , LYS A:337 , LYS A:420 , HOH A:596 , HOH A:600 , HOH A:612 , HOH A:724 , SER B:320 , GLY B:321BINDING SITE FOR RESIDUE PLP A 419
15BC6SOFTWARELEU B:118 , ARG B:134 , LEU B:167 , SER B:169 , TYR B:290 , ASP B:293 , ASP B:330 , SAM B:417 , PLP B:419 , HOH B:597BINDING SITE FOR RESIDUE LYS B 420
16BC7SOFTWARESER A:320 , GLY A:321 , THR B:110 , TYR B:113 , ARG B:116 , ARG B:198 , TYR B:287 , TYR B:288 , LYS B:337 , LYS B:420 , HOH B:499 , HOH B:503 , HOH B:518 , HOH B:592 , HOH B:607BINDING SITE FOR RESIDUE PLP B 419
17BC8SOFTWARELEU C:118 , ARG C:134 , LEU C:167 , SER C:169 , TYR C:290 , ASP C:293 , ASP C:330 , SAM C:417 , PLP C:419 , HOH C:617BINDING SITE FOR RESIDUE LYS C 420
18BC9SOFTWARETHR C:110 , TYR C:113 , ARG C:116 , LEU C:118 , ARG C:198 , TYR C:287 , TYR C:288 , LYS C:337 , LYS C:420 , HOH C:597 , HOH C:601 , HOH C:606 , HOH C:626 , HOH C:769 , SER D:320 , GLY D:321BINDING SITE FOR RESIDUE PLP C 419
19CC1SOFTWARELEU D:118 , ARG D:134 , LEU D:167 , SER D:169 , TYR D:290 , ASP D:293 , ASP D:330 , SAM D:417 , PLP D:419 , HOH D:640BINDING SITE FOR RESIDUE LYS D 420
20CC2SOFTWARESER C:320 , GLY C:321 , THR D:110 , TYR D:113 , ARG D:116 , LEU D:118 , ARG D:198 , TYR D:287 , TYR D:288 , LYS D:337 , LYS D:420 , HOH D:498 , HOH D:502 , HOH D:659 , HOH D:660BINDING SITE FOR RESIDUE PLP D 419
21CC3SOFTWARECYS A:125 , CYS A:129 , CYS A:132 , GLY A:171 , ARG A:202 , HIS A:230 , SAM A:417BINDING SITE FOR RESIDUE SF4 A 418
22CC4SOFTWARECYS B:125 , CYS B:129 , CYS B:132 , GLY B:171 , ARG B:202 , HIS B:230 , SAM B:417BINDING SITE FOR RESIDUE SF4 B 418
23CC5SOFTWARECYS C:125 , CYS C:129 , CYS C:132 , GLY C:171 , ARG C:202 , HIS C:230 , SAM C:417BINDING SITE FOR RESIDUE SF4 C 418
24CC6SOFTWARECYS D:125 , CYS D:129 , CYS D:132 , GLY D:171 , ARG D:202 , HIS D:230 , SAM D:417 , HOH D:608BINDING SITE FOR RESIDUE SF4 D 418

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A5H)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1His A:223 -Pro A:224
2His B:223 -Pro B:224
3His C:223 -Pro C:224
4His D:223 -Pro D:224

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2A5H)

(-) Exons   (0, 0)

(no "Exon" information available for 2A5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:409
 aligned with KAMA_CLOSU | Q9XBQ8 from UniProtKB/Swiss-Prot  Length:416

    Alignment length:409
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
           KAMA_CLOSU     3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNK 411
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhh.........hhhhhh........hhhhhhhh.hhhhhh....................ee.....eeeeeee.......................hhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh.eeeeeee.......hhhhh.hhhhhhhhhhh.....hhhhh.eeeeee....eeee.....eeeee..eeeee.....eeeee......................hhhhhhhh....ee....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5h A   3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRmAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDmCSmYCRHCTRRRFAGQSDDSmPmERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNmLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVmKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVmPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGmALEPVGLERNK 411
                                    12        22        32        42        52    |   62        72        82        92       102       112       122 |  |  132       142  | |  152       162       172       182       192       202       212     | 222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
                                                                                 57-MSE                                                            124-MSE              145-MSE                                                                  218-MSE                                               272-MSE                                                              341-MSE                                                    400-MSE       
                                                                                                                                                      127-MSE             147-MSE                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:410
 aligned with KAMA_CLOSU | Q9XBQ8 from UniProtKB/Swiss-Prot  Length:416

    Alignment length:410
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412
           KAMA_CLOSU     3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNKR 412
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhh.........hhhhhh........hhhhhhhh.hhhhhh....................ee.....eeeeeee.......................hhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhhh.eeeeeeee......hhhhh.hhhhhhhhhhh.....hhhhh.eeeeee....eeee.....eeee...eeeee.....eeeee......................hhhhhhhh....ee....hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5h B   3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRmAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDmCSmYCRHCTRRRFAGQSDDSmPmERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNmLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVmKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVmPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGmALEPVGLERNKR 412
                                    12        22        32        42        52    |   62        72        82        92       102       112       122 |  |  132       142  | |  152       162       172       182       192       202       212     | 222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412
                                                                                 57-MSE                                                            124-MSE              145-MSE                                                                  218-MSE                                               272-MSE                                                              341-MSE                                                    400-MSE        
                                                                                                                                                      127-MSE             147-MSE                                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:409
 aligned with KAMA_CLOSU | Q9XBQ8 from UniProtKB/Swiss-Prot  Length:416

    Alignment length:409
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
           KAMA_CLOSU     3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNK 411
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhh.........hhhhhh........hhhhhhhh.hhhhhh....................ee.....eeeeeee.......................hhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhhh.eeeeeeee......hhhhh.hhhhhhhhhhh.....hhhhh.eeeeee....eeee.....eeee...eeeee.....eeeee......................hhhhhhhh....ee....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5h C   3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRmAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDmCSmYCRHCTRRRFAGQSDDSmPmERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNmLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVmKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVmPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGmALEPVGLERNK 411
                                    12        22        32        42        52    |   62        72        82        92       102       112       122 |  |  132       142  | |  152       162       172       182       192       202       212     | 222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
                                                                                 57-MSE                                                            124-MSE              145-MSE                                                                  218-MSE                                               272-MSE                                                              341-MSE                                                    400-MSE       
                                                                                                                                                      127-MSE             147-MSE                                                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:410
 aligned with KAMA_CLOSU | Q9XBQ8 from UniProtKB/Swiss-Prot  Length:416

    Alignment length:410
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412
           KAMA_CLOSU     3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNKR 412
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhh.........hhhhhh........hhhhhhhh.hhhhhh....................ee.....eeeeeee.......................hhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh.eeeeeee.......hhhhh.hhhhhhhhhhh.....hhhhh.eeeeee....eeee.....eeee...eeeee.....eeeee......................hhhhhhhh....ee....hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5h D   3 NRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRmAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDmCSmYCRHCTRRRFAGQSDDSmPmERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNmLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVmKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVmPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGmALEPVGLERNKR 412
                                    12        22        32        42        52    |   62        72        82        92       102       112       122 |  |  132       142  | |  152       162       172       182       192       202       212     | 222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412
                                                                                 57-MSE                                                            124-MSE              145-MSE                                                                  218-MSE                                               272-MSE                                                              341-MSE                                                    400-MSE        
                                                                                                                                                      127-MSE             147-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2A5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2A5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A5H)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (KAMA_CLOSU | Q9XBQ8)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0050066    lysine 2,3-aminomutase activity    Catalysis of the reaction: L-lysine = (3S)-3,6-diaminohexanoate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0019475    L-lysine catabolic process to acetate    The chemical reactions and pathways resulting in the breakdown of L-lysine into other compounds, including acetate.

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