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Sequence, Chains, Asymmetric and Biological Units

Title 2.1 ANGSTROM X-RAY CRYSTAL STRUCTURE OF LYSINE-2,3-AMINOMUTA CLOSTRIDIUM SUBTERMINALE SB4, WITH MICHAELIS ANALOG (L-ALPH EXTERNAL ALDIMINE FORM OF PYRIDOXAL-5'-PHOSPHATE).
Keywords RADICAL SAM, FOUR-IRON-FOUR-SULFUR CLUSTER, 4FE4S, FS4, SAM, ADENOSYLMETHIONINE, ALPHA-BETA CHANNEL, PYRIDOXAL-5'-PHOSPH EXTERNAL ALDIMINE, MICHAELIS ANALOG, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2A5H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-LYSINE 2,3-AMINOMUTASE  A 409 3170 72
2  Protein   L-LYSINE 2,3-AMINOMUTASE  B 410 3181 72
3  Protein   L-LYSINE 2,3-AMINOMUTASE  C 409 3170 72
4  Protein   L-LYSINE 2,3-AMINOMUTASE  D 410 3181 72
5  Protein   L-LYSINE 2,3-AMINOMUTASE  A 6 0 66
6  Protein   L-LYSINE 2,3-AMINOMUTASE  B 6 0 66
7  Protein   L-LYSINE 2,3-AMINOMUTASE  C 6 0 66
8  Protein   L-LYSINE 2,3-AMINOMUTASE  D 6 0 66
9 Water     608 0 608
total       2270 12702 1160
Proteins
Unit 1 ASN3 ARG4 ARG5 TYR6 GLU7 LEU8 PHE9 LYS10 ASP11 VAL12 SER13 ASP14 ALA15 ASP16 TRP17 ASN18 ASP19 TRP20 ARG21 TRP22 GLN23 VAL24 ARG25 ASN26 ARG27 ILE28 GLU29 THR30 VAL31 GLU32 GLU33 LEU34 LYS35 LYS36 TYR37 ILE38 PRO39 LEU40 THR41 LYS42 GLU43 GLU44 GLU45 GLU46 GLY47 VAL48 ALA49 GLN50 CYS51 VAL52 LYS53 SER54 LEU55 ARG56 MSE57 ALA58 ILE59 THR60 PRO61 TYR62 TYR63 LEU64 SER65 LEU66 ILE67 ASP68 PRO69 ASN70 ASP71 PRO72 ASN73 ASP74 PRO75 VAL76 ARG77 LYS78 GLN79 ALA80 ILE81 PRO82 THR83 ALA84 LEU85 GLU86 LEU87 ASN88 LYS89 ALA90 ALA91 ALA92 ASP93 LEU94 GLU95 ASP96 PRO97 LEU98 HIS99 GLU100 ASP101 THR102 ASP103 SER104 PRO105 VAL106 PRO107 GLY108 LEU109 THR110 HIS111 ARG112 TYR113 PRO114 ASP115 ARG116 VAL117 LEU118 LEU119 LEU120 ILE121 THR122 ASP123 MSE124 CYS125 SER126 MSE127 TYR128 CYS129 ARG130 HIS131 CYS132 THR133 ARG134 ARG135 ARG136 PHE137 ALA138 GLY139 GLN140 SER141 ASP142 ASP143 SER144 MSE145 PRO146 MSE147 GLU148 ARG149 ILE150 ASP151 LYS152 ALA153 ILE154 ASP155 TYR156 ILE157 ARG158 ASN159 THR160 PRO161 GLN162 VAL163 ARG164 ASP165 VAL166 LEU167 LEU168 SER169 GLY170 GLY171 ASP172 ALA173 LEU174 LEU175 VAL176 SER177 ASP178 GLU179 THR180 LEU181 GLU182 TYR183 ILE184 ILE185 ALA186 LYS187 LEU188 ARG189 GLU190 ILE191 PRO192 HIS193 VAL194 GLU195 ILE196 VAL197 ARG198 ILE199 GLY200 SER201 ARG202 THR203 PRO204 VAL205 VAL206 LEU207 PRO208 GLN209 ARG210 ILE211 THR212 PRO213 GLU214 LEU215 VAL216 ASN217 MSE218 LEU219 LYS220 LYS221 TYR222 HIS223 PRO224 VAL225 TRP226 LEU227 ASN228 THR229 HIS230 PHE231 ASN232 HIS233 PRO234 ASN235 GLU236 ILE237 THR238 GLU239 GLU240 SER241 THR242 ARG243 ALA244 CYS245 GLN246 LEU247 LEU248 ALA249 ASP250 ALA251 GLY252 VAL253 PRO254 LEU255 GLY256 ASN257 GLN258 SER259 VAL260 LEU261 LEU262 ARG263 GLY264 VAL265 ASN266 ASP267 CYS268 VAL269 HIS270 VAL271 MSE272 LYS273 GLU274 LEU275 VAL276 ASN277 LYS278 LEU279 VAL280 LYS281 ILE282 ARG283 VAL284 ARG285 PRO286 TYR287 TYR288 ILE289 TYR290 GLN291 CYS292 ASP293 LEU294 SER295 LEU296 GLY297 LEU298 GLU299 HIS300 PHE301 ARG302 THR303 PRO304 VAL305 SER306 LYS307 GLY308 ILE309 GLU310 ILE311 ILE312 GLU313 GLY314 LEU315 ARG316 GLY317 HIS318 THR319 SER320 GLY321 TYR322 CYS323 VAL324 PRO325 THR326 PHE327 VAL328 VAL329 ASP330 ALA331 PRO332 GLY333 GLY334 GLY335 GLY336 LYS337 THR338 PRO339 VAL340 MSE341 PRO342 ASN343 TYR344 VAL345 ILE346 SER347 GLN348 SER349 HIS350 ASP351 LYS352 VAL353 ILE354 LEU355 ARG356 ASN357 PHE358 GLU359 GLY360 VAL361 ILE362 THR363 THR364 TYR365 SER366 GLU367 PRO368 ILE369 ASN370 TYR371 THR372 PRO373 GLY374 CYS375 ASN376 CYS377 ASP378 VAL379 CYS380 THR381 GLY382 LYS383 LYS384 LYS385 VAL386 HIS387 LYS388 VAL389 GLY390 VAL391 ALA392 GLY393 LEU394 LEU395 ASN396 GLY397 GLU398 GLY399 MSE400 ALA401 LEU402 GLU403 PRO404 VAL405 GLY406 LEU407 GLU408 ARG409 ASN410 LYS411
Unit 2 ASN3 ARG4 ARG5 TYR6 GLU7 LEU8 PHE9 LYS10 ASP11 VAL12 SER13 ASP14 ALA15 ASP16 TRP17 ASN18 ASP19 TRP20 ARG21 TRP22 GLN23 VAL24 ARG25 ASN26 ARG27 ILE28 GLU29 THR30 VAL31 GLU32 GLU33 LEU34 LYS35 LYS36 TYR37 ILE38 PRO39 LEU40 THR41 LYS42 GLU43 GLU44 GLU45 GLU46 GLY47 VAL48 ALA49 GLN50 CYS51 VAL52 LYS53 SER54 LEU55 ARG56 MSE57 ALA58 ILE59 THR60 PRO61 TYR62 TYR63 LEU64 SER65 LEU66 ILE67 ASP68 PRO69 ASN70 ASP71 PRO72 ASN73 ASP74 PRO75 VAL76 ARG77 LYS78 GLN79 ALA80 ILE81 PRO82 THR83 ALA84 LEU85 GLU86 LEU87 ASN88 LYS89 ALA90 ALA91 ALA92 ASP93 LEU94 GLU95 ASP96 PRO97 LEU98 HIS99 GLU100 ASP101 THR102 ASP103 SER104 PRO105 VAL106 PRO107 GLY108 LEU109 THR110 HIS111 ARG112 TYR113 PRO114 ASP115 ARG116 VAL117 LEU118 LEU119 LEU120 ILE121 THR122 ASP123 MSE124 CYS125 SER126 MSE127 TYR128 CYS129 ARG130 HIS131 CYS132 THR133 ARG134 ARG135 ARG136 PHE137 ALA138 GLY139 GLN140 SER141 ASP142 ASP143 SER144 MSE145 PRO146 MSE147 GLU148 ARG149 ILE150 ASP151 LYS152 ALA153 ILE154 ASP155 TYR156 ILE157 ARG158 ASN159 THR160 PRO161 GLN162 VAL163 ARG164 ASP165 VAL166 LEU167 LEU168 SER169 GLY170 GLY171 ASP172 ALA173 LEU174 LEU175 VAL176 SER177 ASP178 GLU179 THR180 LEU181 GLU182 TYR183 ILE184 ILE185 ALA186 LYS187 LEU188 ARG189 GLU190 ILE191 PRO192 HIS193 VAL194 GLU195 ILE196 VAL197 ARG198 ILE199 GLY200 SER201 ARG202 THR203 PRO204 VAL205 VAL206 LEU207 PRO208 GLN209 ARG210 ILE211 THR212 PRO213 GLU214 LEU215 VAL216 ASN217 MSE218 LEU219 LYS220 LYS221 TYR222 HIS223 PRO224 VAL225 TRP226 LEU227 ASN228 THR229 HIS230 PHE231 ASN232 HIS233 PRO234 ASN235 GLU236 ILE237 THR238 GLU239 GLU240 SER241 THR242 ARG243 ALA244 CYS245 GLN246 LEU247 LEU248 ALA249 ASP250 ALA251 GLY252 VAL253 PRO254 LEU255 GLY256 ASN257 GLN258 SER259 VAL260 LEU261 LEU262 ARG263 GLY264 VAL265 ASN266 ASP267 CYS268 VAL269 HIS270 VAL271 MSE272 LYS273 GLU274 LEU275 VAL276 ASN277 LYS278 LEU279 VAL280 LYS281 ILE282 ARG283 VAL284 ARG285 PRO286 TYR287 TYR288 ILE289 TYR290 GLN291 CYS292 ASP293 LEU294 SER295 LEU296 GLY297 LEU298 GLU299 HIS300 PHE301 ARG302 THR303 PRO304 VAL305 SER306 LYS307 GLY308 ILE309 GLU310 ILE311 ILE312 GLU313 GLY314 LEU315 ARG316 GLY317 HIS318 THR319 SER320 GLY321 TYR322 CYS323 VAL324 PRO325 THR326 PHE327 VAL328 VAL329 ASP330 ALA331 PRO332 GLY333 GLY334 GLY335 GLY336 LYS337 THR338 PRO339 VAL340 MSE341 PRO342 ASN343 TYR344 VAL345 ILE346 SER347 GLN348 SER349 HIS350 ASP351 LYS352 VAL353 ILE354 LEU355 ARG356 ASN357 PHE358 GLU359 GLY360 VAL361 ILE362 THR363 THR364 TYR365 SER366 GLU367 PRO368 ILE369 ASN370 TYR371 THR372 PRO373 GLY374 CYS375 ASN376 CYS377 ASP378 VAL379 CYS380 THR381 GLY382 LYS383 LYS384 LYS385 VAL386 HIS387 LYS388 VAL389 GLY390 VAL391 ALA392 GLY393 LEU394 LEU395 ASN396 GLY397 GLU398 GLY399 MSE400 ALA401 LEU402 GLU403 PRO404 VAL405 GLY406 LEU407 GLU408 ARG409 ASN410 LYS411 ARG412
Unit 3 ASN3 ARG4 ARG5 TYR6 GLU7 LEU8 PHE9 LYS10 ASP11 VAL12 SER13 ASP14 ALA15 ASP16 TRP17 ASN18 ASP19 TRP20 ARG21 TRP22 GLN23 VAL24 ARG25 ASN26 ARG27 ILE28 GLU29 THR30 VAL31 GLU32 GLU33 LEU34 LYS35 LYS36 TYR37 ILE38 PRO39 LEU40 THR41 LYS42 GLU43 GLU44 GLU45 GLU46 GLY47 VAL48 ALA49 GLN50 CYS51 VAL52 LYS53 SER54 LEU55 ARG56 MSE57 ALA58 ILE59 THR60 PRO61 TYR62 TYR63 LEU64 SER65 LEU66 ILE67 ASP68 PRO69 ASN70 ASP71 PRO72 ASN73 ASP74 PRO75 VAL76 ARG77 LYS78 GLN79 ALA80 ILE81 PRO82 THR83 ALA84 LEU85 GLU86 LEU87 ASN88 LYS89 ALA90 ALA91 ALA92 ASP93 LEU94 GLU95 ASP96 PRO97 LEU98 HIS99 GLU100 ASP101 THR102 ASP103 SER104 PRO105 VAL106 PRO107 GLY108 LEU109 THR110 HIS111 ARG112 TYR113 PRO114 ASP115 ARG116 VAL117 LEU118 LEU119 LEU120 ILE121 THR122 ASP123 MSE124 CYS125 SER126 MSE127 TYR128 CYS129 ARG130 HIS131 CYS132 THR133 ARG134 ARG135 ARG136 PHE137 ALA138 GLY139 GLN140 SER141 ASP142 ASP143 SER144 MSE145 PRO146 MSE147 GLU148 ARG149 ILE150 ASP151 LYS152 ALA153 ILE154 ASP155 TYR156 ILE157 ARG158 ASN159 THR160 PRO161 GLN162 VAL163 ARG164 ASP165 VAL166 LEU167 LEU168 SER169 GLY170 GLY171 ASP172 ALA173 LEU174 LEU175 VAL176 SER177 ASP178 GLU179 THR180 LEU181 GLU182 TYR183 ILE184 ILE185 ALA186 LYS187 LEU188 ARG189 GLU190 ILE191 PRO192 HIS193 VAL194 GLU195 ILE196 VAL197 ARG198 ILE199 GLY200 SER201 ARG202 THR203 PRO204 VAL205 VAL206 LEU207 PRO208 GLN209 ARG210 ILE211 THR212 PRO213 GLU214 LEU215 VAL216 ASN217 MSE218 LEU219 LYS220 LYS221 TYR222 HIS223 PRO224 VAL225 TRP226 LEU227 ASN228 THR229 HIS230 PHE231 ASN232 HIS233 PRO234 ASN235 GLU236 ILE237 THR238 GLU239 GLU240 SER241 THR242 ARG243 ALA244 CYS245 GLN246 LEU247 LEU248 ALA249 ASP250 ALA251 GLY252 VAL253 PRO254 LEU255 GLY256 ASN257 GLN258 SER259 VAL260 LEU261 LEU262 ARG263 GLY264 VAL265 ASN266 ASP267 CYS268 VAL269 HIS270 VAL271 MSE272 LYS273 GLU274 LEU275 VAL276 ASN277 LYS278 LEU279 VAL280 LYS281 ILE282 ARG283 VAL284 ARG285 PRO286 TYR287 TYR288 ILE289 TYR290 GLN291 CYS292 ASP293 LEU294 SER295 LEU296 GLY297 LEU298 GLU299 HIS300 PHE301 ARG302 THR303 PRO304 VAL305 SER306 LYS307 GLY308 ILE309 GLU310 ILE311 ILE312 GLU313 GLY314 LEU315 ARG316 GLY317 HIS318 THR319 SER320 GLY321 TYR322 CYS323 VAL324 PRO325 THR326 PHE327 VAL328 VAL329 ASP330 ALA331 PRO332 GLY333 GLY334 GLY335 GLY336 LYS337 THR338 PRO339 VAL340 MSE341 PRO342 ASN343 TYR344 VAL345 ILE346 SER347 GLN348 SER349 HIS350 ASP351 LYS352 VAL353 ILE354 LEU355 ARG356 ASN357 PHE358 GLU359 GLY360 VAL361 ILE362 THR363 THR364 TYR365 SER366 GLU367 PRO368 ILE369 ASN370 TYR371 THR372 PRO373 GLY374 CYS375 ASN376 CYS377 ASP378 VAL379 CYS380 THR381 GLY382 LYS383 LYS384 LYS385 VAL386 HIS387 LYS388 VAL389 GLY390 VAL391 ALA392 GLY393 LEU394 LEU395 ASN396 GLY397 GLU398 GLY399 MSE400 ALA401 LEU402 GLU403 PRO404 VAL405 GLY406 LEU407 GLU408 ARG409 ASN410 LYS411
Unit 4 ASN3 ARG4 ARG5 TYR6 GLU7 LEU8 PHE9 LYS10 ASP11 VAL12 SER13 ASP14 ALA15 ASP16 TRP17 ASN18 ASP19 TRP20 ARG21 TRP22 GLN23 VAL24 ARG25 ASN26 ARG27 ILE28 GLU29 THR30 VAL31 GLU32 GLU33 LEU34 LYS35 LYS36 TYR37 ILE38 PRO39 LEU40 THR41 LYS42 GLU43 GLU44 GLU45 GLU46 GLY47 VAL48 ALA49 GLN50 CYS51 VAL52 LYS53 SER54 LEU55 ARG56 MSE57 ALA58 ILE59 THR60 PRO61 TYR62 TYR63 LEU64 SER65 LEU66 ILE67 ASP68 PRO69 ASN70 ASP71 PRO72 ASN73 ASP74 PRO75 VAL76 ARG77 LYS78 GLN79 ALA80 ILE81 PRO82 THR83 ALA84 LEU85 GLU86 LEU87 ASN88 LYS89 ALA90 ALA91 ALA92 ASP93 LEU94 GLU95 ASP96 PRO97 LEU98 HIS99 GLU100 ASP101 THR102 ASP103 SER104 PRO105 VAL106 PRO107 GLY108 LEU109 THR110 HIS111 ARG112 TYR113 PRO114 ASP115 ARG116 VAL117 LEU118 LEU119 LEU120 ILE121 THR122 ASP123 MSE124 CYS125 SER126 MSE127 TYR128 CYS129 ARG130 HIS131 CYS132 THR133 ARG134 ARG135 ARG136 PHE137 ALA138 GLY139 GLN140 SER141 ASP142 ASP143 SER144 MSE145 PRO146 MSE147 GLU148 ARG149 ILE150 ASP151 LYS152 ALA153 ILE154 ASP155 TYR156 ILE157 ARG158 ASN159 THR160 PRO161 GLN162 VAL163 ARG164 ASP165 VAL166 LEU167 LEU168 SER169 GLY170 GLY171 ASP172 ALA173 LEU174 LEU175 VAL176 SER177 ASP178 GLU179 THR180 LEU181 GLU182 TYR183 ILE184 ILE185 ALA186 LYS187 LEU188 ARG189 GLU190 ILE191 PRO192 HIS193 VAL194 GLU195 ILE196 VAL197 ARG198 ILE199 GLY200 SER201 ARG202 THR203 PRO204 VAL205 VAL206 LEU207 PRO208 GLN209 ARG210 ILE211 THR212 PRO213 GLU214 LEU215 VAL216 ASN217 MSE218 LEU219 LYS220 LYS221 TYR222 HIS223 PRO224 VAL225 TRP226 LEU227 ASN228 THR229 HIS230 PHE231 ASN232 HIS233 PRO234 ASN235 GLU236 ILE237 THR238 GLU239 GLU240 SER241 THR242 ARG243 ALA244 CYS245 GLN246 LEU247 LEU248 ALA249 ASP250 ALA251 GLY252 VAL253 PRO254 LEU255 GLY256 ASN257 GLN258 SER259 VAL260 LEU261 LEU262 ARG263 GLY264 VAL265 ASN266 ASP267 CYS268 VAL269 HIS270 VAL271 MSE272 LYS273 GLU274 LEU275 VAL276 ASN277 LYS278 LEU279 VAL280 LYS281 ILE282 ARG283 VAL284 ARG285 PRO286 TYR287 TYR288 ILE289 TYR290 GLN291 CYS292 ASP293 LEU294 SER295 LEU296 GLY297 LEU298 GLU299 HIS300 PHE301 ARG302 THR303 PRO304 VAL305 SER306 LYS307 GLY308 ILE309 GLU310 ILE311 ILE312 GLU313 GLY314 LEU315 ARG316 GLY317 HIS318 THR319 SER320 GLY321 TYR322 CYS323 VAL324 PRO325 THR326 PHE327 VAL328 VAL329 ASP330 ALA331 PRO332 GLY333 GLY334 GLY335 GLY336 LYS337 THR338 PRO339 VAL340 MSE341 PRO342 ASN343 TYR344 VAL345 ILE346 SER347 GLN348 SER349 HIS350 ASP351 LYS352 VAL353 ILE354 LEU355 ARG356 ASN357 PHE358 GLU359 GLY360 VAL361 ILE362 THR363 THR364 TYR365 SER366 GLU367 PRO368 ILE369 ASN370 TYR371 THR372 PRO373 GLY374 CYS375 ASN376 CYS377 ASP378 VAL379 CYS380 THR381 GLY382 LYS383 LYS384 LYS385 VAL386 HIS387 LYS388 VAL389 GLY390 VAL391 ALA392 GLY393 LEU394 LEU395 ASN396 GLY397 GLU398 GLY399 MSE400 ALA401 LEU402 GLU403 PRO404 VAL405 GLY406 LEU407 GLU408 ARG409 ASN410 LYS411 ARG412
Unit 5 SAM417 SF4418 PLP419 LYS420 ZN421 SO4592
Unit 6 SAM417 SF4418 PLP419 LYS420 ZN421 SO4495
Unit 7 SAM417 SF4418 PLP419 LYS420 ZN421 SO4593
Unit 8 SAM417 SF4418 PLP419 LYS420 ZN421 SO4494
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany