1ZX8 - JenaLib

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Title :   CRYSTAL STRUCTURE OF AN ATYPICAL CYCLOPHILIN (PEPTIDYLPROLYL CIS-TRANS ISOMERASE) (TM1367) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   07 Jun 05 (Deposition) - 26 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: C  (2x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. K. Jin, S. S. Krishna, R. Schwarzenbacher, D. Mcmullan, P. Abdubek, S. Agarwalla, E. Ambing, H. Axelrod, J. M. Canaves, H. J. Chiu, A. M. Deacon, M. Didonato, M. A. Elsliger, J. Feuerhelm, A. Godzik, C. Grittini, S. K. Grzechnik, J. Hale, E. Hampton, J. Haugen, M. Hornsby, L. Jaroszewski, H. E. Klock, M. W. Knuth, E. Koesema, A. Kreusch, P. Kuhn, S. A. Lesley, M. D. Miller, K. Moy, E. Nigoghossian L. Okach, S. Oommachen, J. Paulsen, K. Quijano, R. Reyes, C. Rife, R. C. Stevens, G. Spraggon, H. Van Den Bedem, J. Velasquez, A. White, G. Wolf, G. W. Han, Q. Xu, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of Tm1367 From Thermotoga Maritima At 1. 9 A Resolution Reveals An Atypical Member Of The Cyclophilin (Peptidylprolyl Isomerase) Fold.
Proteins V. 63 1112 2006
PubMed-ID: 16544291 | Reference-DOI: 10.1002/PROT.20894

Molecule 1 - HYPOTHETICAL PROTEIN TM1367
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM1367
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 13)

No.	Name	Count	Type	Full Name
1	1PE	3	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
3	NI	1	Ligand/Ion	NICKEL (II) ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
3	NI	-1	Ligand/Ion	NICKEL (II) ION

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	1PE	2	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
3	NI	-1	Ligand/Ion	NICKEL (II) ION

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
3	NI	-1	Ligand/Ion	NICKEL (II) ION

Biological Unit 4 (1, 6)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	NI	-1	Ligand/Ion	NICKEL (II) ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS C:-1 , HOH C:134 , HOH C:160	BINDING SITE FOR RESIDUE NI C 125
2	AC2	SOFTWARE	GLU B:42 , TYR B:44 , TRP B:69 , PRO B:91 , ALA B:92 , TRP C:39 , GLU C:42 , TRP C:69 , PRO C:91 , ALA C:92	BINDING SITE FOR RESIDUE 1PE B 125
3	AC3	SOFTWARE	LEU A:6 , LYS A:11 , GLU A:33 , LYS A:116 , HOH A:146 , HOH A:185 , LEU B:6 , PHE B:7 , LYS B:11 , GLU B:33 , HOH B:135	BINDING SITE FOR RESIDUE 1PE B 126
4	AC4	SOFTWARE	TRP A:39 , GLU A:42 , TYR A:44 , TRP A:69 , PHE A:78 , PRO A:91 , ALA A:92	BINDING SITE FOR RESIDUE 1PE A 125

(no "SS Bond" information available for 1ZX8)

Asymmetric Unit

No.	Residues
1	Ile A:30	-	Pro A:31
2	Ile B:30	-	Pro B:31
3	Ile C:30	-	Pro C:31

(no "SAP(SNP)/Variant" information available for 1ZX8)

(no "PROSITE Motif" information available for 1ZX8)

(no "Exon" information available for 1ZX8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:127
 aligned with Q9X187_THEMA | Q9X187 from UniProtKB/TrEMBL  Length:124

    Alignment length:127
                               1                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       
         Q9X187_THEMA     - ---MRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKMENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFASS 124
               SCOP domains ---d1zx8a1 A:1-124 Hypothetical protein TM1367                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeee..hhhhhhhhhhh.eeee.ee...eeeee..........ee......eeeeehhh.eeeee................eeeeeeeeehhhhhhhh....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zx8 A  -2 HHHmRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKmENPREVVEIGDVGYWPPGKALCLFFGKTPmSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFASS 124
                               |     7        17        27        37        47      | 57        67        77      | 87        97       107       117       
                               |                                                   54-MSE                        84-MSE                                    
                               1-MSE

Chain B from PDB  Type:PROTEIN  Length:127
 aligned with Q9X187_THEMA | Q9X187 from UniProtKB/TrEMBL  Length:124

    Alignment length:127
                               1                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       
         Q9X187_THEMA     - ---MRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKMENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFASS 124
               SCOP domains d1zx8b_ B: Hypothetical protein TM1367                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeee..hhhhhhhhhhh.eeeeeee...eeeee..........ee......eeeeehhh.eeeee................eeeeeeeeehhhhhhhh....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zx8 B  -2 HHHmRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKmENPREVVEIGDVGYWPPGKALCLFFGKTPmSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFASS 124
                               |     7        17        27        37        47      | 57        67        77      | 87        97       107       117       
                               1-MSE                                               54-MSE                        84-MSE

Chain C from PDB  Type:PROTEIN  Length:128
 aligned with Q9X187_THEMA | Q9X187 from UniProtKB/TrEMBL  Length:124

    Alignment length:128
                                 1                                                                                                                          
                                 |   5        15        25        35        45        55        65        75        85        95       105       115        
         Q9X187_THEMA     - -----MRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKMENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFAS 123
               SCOP domains d1zx8c_ C: Hypothetical protein TM1367                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Cyclophil_like-1zx8C01 C:1-120                                                                                          --- Pfam domains (1)
           Pfam domains (2) -----Cyclophil_like-1zx8C02 C:1-120                                                                                          --- Pfam domains (2)
           Pfam domains (3) -----Cyclophil_like-1zx8C03 C:1-120                                                                                          --- Pfam domains (3)
         Sec.struct. author ....eeeeeee....eeeeeee..hhhhhhhhhhh.eeee.ee...eeeee..........ee......eeeeehhh.eeeee................eeeeeeeeehhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zx8 C  -4 HHHHHmRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKmENPREVVEIGDVGYWPPGKALCLFFGKTPmSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFAS 123
                                 |   5        15        25        35        45        55        65        75        85        95       105       115        
                                 1-MSE                                               54-MSE                        84-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Superfamilies( (-)

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)

Class: All beta proteins (24004)

Fold: Cyclophilin-like (169)

Superfamily: Cyclophilin-like (169)

Family: TM1367-like (2)

Protein domain: Hypothetical protein TM1367 (1)

Thermotoga maritima [TaxId: 2336] (1)

1a	d1zx8a1	A:1-124
1b	d1zx8b_	B:
1c	d1zx8c_	C:

(no "CATH Domain" information available for 1ZX8)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Cyclophil-like (65)

Family: Cyclophil_like (3)

Thermotoga maritima (2)

1a	Cyclophil_like-1zx8C01	C:1-120
1b	Cyclophil_like-1zx8C02	C:1-120
1c	Cyclophil_like-1zx8C03	C:1-120

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