1ZWY - JenaLib

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Title :   CRYSTAL STRUCTURE OF PROTEIN VC0702 FROM VIBRIO CHOLERAE

Authors :   C. Chang, R. Wu, A. Joachimiak, Midwest Center For Structural Geno (Mcsg)

Date :   06 Jun 05 (Deposition) - 19 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Hypothetical Protein, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, R. Wu, S. Moy, A. Joachimiak
Crystal Structure Of Protein Vc0702 From Vibrio Cholerae
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL UPF0244 PROTEIN VC0702
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG
	Expression System Strain	:	BL21(DE3) DERIVATIVES
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 21)

No.	Name	Count	Type	Full Name
1	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 21)

No.	Name	Count	Type	Full Name
1	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 10)

No.	Name	Count	Type	Full Name
1	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 11)

No.	Name	Count	Type	Full Name
1	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1ZWY)

(no "SS Bond" information available for 1ZWY)

(no "Cis Peptide Bond" information available for 1ZWY)

(no "SAP(SNP)/Variant" information available for 1ZWY)

(no "PROSITE Motif" information available for 1ZWY)

(no "Exon" information available for 1ZWY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:165
 aligned with NCPP_VIBCH | Q9KU27 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:173
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178   
           NCPP_VIBCH     9 VMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPMSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWMIVESDQQRGESRSACLMLPPLVLERLRQAKELGDVMDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYP 181
               SCOP domains d1zwya1 A:9-181 Hypothetical protein VC0702                                                                                                                                   SCOP domains
               CATH domains 1zwyA00 A:9-181  [code=3.90.950.10, no name defined]                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhhhh.....eeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhh..-hhhhhhhhhhh-------hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zwy A   9 VmRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPmSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWmIVESDQQRGESRSACLmLPPLVLERLRQA-ELGDVmDEVFG-------GGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYP 181
                             |      18        28        38        48      | 58        68        78        88        98       108     | 118       128    |  138       148       158       168       178   
                             |                                           55-MSE                                    97-MSE          114-MSE     126 |    |  138     146                                   
                            10-MSE                                                                                                               128    |                                                
                                                                                                                                                      133-MSE

Chain B from PDB  Type:PROTEIN  Length:180
 aligned with NCPP_VIBCH | Q9KU27 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:184
                              1                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178    
           NCPP_VIBCH     - --MPPIIKRRVMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPMSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWMIVESDQQRGESRSACLMLPPLVLERLRQAKELGDVMDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS 182
               SCOP domains d1zwyb_ B: automated matches                                                                                                                                                             SCOP domains
               CATH domains ------------1zwyB01 B:11-182  [code=3.90.950.10, no name defined]                                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhh----hhhhhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zwy B  -1 NAmPPIIKRRVmRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPmSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWmIVESDQQRGESRSACLmLPPLVLERL----ELGDVmDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS 182
                              |      8 |      18        28        38        48      | 58        68        78        88        98       108     | 118    |  128    |  138       148       158       168       178    
                              1-MSE   10-MSE                                       55-MSE                                    97-MSE          114-MSE  123  128    |                                                 
                                                                                                                                                                133-MSE

Chain C from PDB  Type:PROTEIN  Length:172
 aligned with NCPP_VIBCH | Q9KU27 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:175
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178     
           NCPP_VIBCH     9 VMRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPMSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWMIVESDQQRGESRSACLMLPPLVLERLRQAKELGDVMDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPSA 183
               SCOP domains d1zwyc_ C: automated matches                                                                                                                                                    SCOP domains
               CATH domains 1zwyC00 C:9-183  [code=3.90.950.10, no name defined]                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhh---hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zwy C   9 VmRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPmSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWmIVESDQQRGESRSACLmLPPLVLERLR---ELGDVmDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPSA 183
                             |      18        28        38        48      | 58        68        78        88        98       108     | 118     | 128    |  138       148       158       168       178     
                            10-MSE                                       55-MSE                                    97-MSE          114-MSE   124 128    |                                                  
                                                                                                                                                      133-MSE

Chain D from PDB  Type:PROTEIN  Length:173
 aligned with NCPP_VIBCH | Q9KU27 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:173
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   
           NCPP_VIBCH    10 MRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPMSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWMIVESDQQRGESRSACLMLPPLVLERLRQAKELGDVMDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS 182
               SCOP domains d1zwyd_ D: automated matches                                                                                                                                                  SCOP domains
               CATH domains -1zwyD00 D:11-182  [code=3.90.950.10, no name defined]                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zwy D  10 mRKIIIASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPmSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEENKTFAWmIVESDQQRGESRSACLmLPPLVLERLRQAKELGDVmDEVFGTENIKQKGGAIGLLTRHHLTRSTVYHQALILALIPFINPEHYPS 182
                            |       19        29        39        49     |  59        69        79        89       |99       109    |  119       129   |   139       149       159       169       179   
                           10-MSE                                       55-MSE                                    97-MSE          114-MSE            133-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Anticodon-binding domain-like (97)

Superfamily: ITPase-like (32)

Family: automated matches (13)

Protein domain: automated matches (13)

Vibrio cholerae [TaxId: 666] (2)

1a	d1zwyb_	B:
1b	d1zwyc_	C:
1c	d1zwyd_	D:

Family: YjjX-like (3)

Protein domain: Hypothetical protein VC0702 (1)

Vibrio cholerae [TaxId: 666] (1)

d1zwya1

A:9-181

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Maf protein (16)

Homologous Superfamily: [code=3.90.950.10, no name defined] (15)

Vibrio cholerae. Organism_taxid: 666. (1)

1a	1zwyD00	D:11-182
1b	1zwyC00	C:9-183
1c	1zwyB01	B:11-182
1d	1zwyA00	A:9-181

(no "Pfam Domain" information available for 1ZWY)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (NCPP_VIBCH | Q9KU27)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
	GO:0017111	nucleoside-triphosphatase activity	Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0009117	nucleotide metabolic process	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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