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Title :   CRYSTAL STRUCTURE OF A PUTATIVE NUCLEASE WITH A RIBONUCLEASE H-LIKE MOTIF FOLD (TM1739) FROM THERMOTOGA MARITIMA AT 2.20 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   31 May 05 (Deposition) - 21 Jun 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Putative Nuclease, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1739) From Thermotoga Maritima At 2. 20 A Resolution
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN TM1739
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM1739
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 11)

No.	Name	Count	Type	Full Name
1	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 11)

No.	Name	Count	Type	Full Name
1	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 22)

No.	Name	Count	Type	Full Name
1	MSE	22	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1ZUP)

(no "SS Bond" information available for 1ZUP)

Asymmetric Unit

No.	Residues
1	Gly A:171	-	Pro A:172
2	Gly B:171	-	Pro B:172

(no "SAP(SNP)/Variant" information available for 1ZUP)

(no "PROSITE Motif" information available for 1ZUP)

(no "Exon" information available for 1ZUP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:293
 aligned with Q9X261_THEMA | Q9X261 from UniProtKB/TrEMBL  Length:303

    Alignment length:303
                              1                                                                                                                                                                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298   
         Q9X261_THEMA     - --MQVRIERAERIESELEEHVGDQTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRITTDEGITGIFAELCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEGKDAMQSIDLYMRSLEIEEVRKHMDKNILIVKDGPAARELPFEENVGPIGLVKNIGVTELSKEDFKKLRFLKKGKRSKMFVSSRETPLKKVGAYVKLIDGEGIRGLVRLETYVKDDNQIPYIRKVFDDLAKTLPHLTADLPIPRLPENILPIQFLEENLSYYLTDKNYMNTRLFAYI 301
               SCOP domains --d1zupa1 A:1-301 Hypothetical protein TM1739                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.................................eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeee...eeee........eeeeeee.........eeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeee...............eeee........hhhhhhhhhhh........ee..----.eeeeeeee.........eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh....------.hhhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zup A  -1 HHmQVRIERAERIESELEEHVGDQTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRITTDEGITGIFAELCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEGKDAmQSIDLYmRSLEIEEVRKHmDKNILIVKDGPAARELPFEENVGPIGLVKNIGVTELSKEDFKKLRFLKKGKRSKmFVSS----LKKVGAYVKLIDGEGIRGLVRLETYVKDDNQIPYIRKVFDDLAKTLPHLTADLP------NILPIQFLEENLSYYLTDKNYmNTRLFAYI 301
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128|      138       148       158       168       178       188       198    |   |-   |   218       228       238       248       258      |  -   |   278       288    |  298   
                              |                                                                                                                             129-MSE  |         148-MSE                                                203-MSE  212                                                  265    272                  293-MSE    
                              1-MSE                                                                                                                                136-MSE

Chain B from PDB  Type:PROTEIN  Length:287
 aligned with Q9X261_THEMA | Q9X261 from UniProtKB/TrEMBL  Length:303

    Alignment length:299
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
         Q9X261_THEMA     4 RIERAERIESELEEHVGDQTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRITTDEGITGIFAELCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEGKDAMQSIDLYMRSLEIEEVRKHMDKNILIVKDGPAARELPFEENVGPIGLVKNIGVTELSKEDFKKLRFLKKGKRSKMFVSSRETPLKKVGAYVKLIDGEGIRGLVRLETYVKDDNQIPYIRKVFDDLAKTLPHLTADLPIPRLPENILPIQFLEENLSYYLTDKNYMNTRLFAYIG 302
               SCOP domains d1zupb_ B: Hypothetical protein TM1739                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------NurA-1zupB01 B:43-285                                                                                                                                                                                                                              ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------NurA-1zupB02 B:43-285                                                                                                                                                                                                                              ----------------- Pfam domains (2)
         Sec.struct. author .eeeeee.................................eeeeeeeeeeeeeeeee....eeeeeeeeeeeeeee....eee........eeeeeeee........eeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...............eeee........hhhhhhhhh.............-------.eeeeee.........eeeeee.--...hhhhhhhhhhhhhhhhhhhh....---....hhhhhhhhhhhhh...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zup B   4 RIERAERIESELEEHVGDQTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRITTDEGITGIFAELCVGAVIWDREGGTKTLFSPDKPPVKERVLGFSQSFQEEGYEEVGGILFKVVKEGKDAmQSIDLYmRSLEIEEVRKHmDKNILIVKDGPAARELPFEENVGPIGLVKNIGVTELSKEDFKKLRFLKKGKRSKmFVS-------KVGAYVKLIDGEGIRGLVRLETY--DDNQIPYIRKVFDDLAKTLPHLTADLP---LPENILPIQFLEENLSYYLTDKNYmNTRLFAYIG 302
                                    13        23        33        43        53        63        73        83        93       103       113       123     | 133  |    143    |  153       163       173       183       193       203  |      -|      223       233  |  | 243       253       263 |   | 273       283       293         
                                                                                                                                                       129-MSE  |         148-MSE                                                203-MSE    214                   236  |                       265 269                     293-MSE     
                                                                                                                                                              136-MSE                                                               206                              239

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Ribonuclease H-like (775)

Family: TM1739-like (1)

Protein domain: Hypothetical protein TM1739 (1)

Thermotoga maritima [TaxId: 2336] (1)

1a	d1zupa1	A:1-301
1b	d1zupb_	B:

(no "CATH Domain" information available for 1ZUP)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: RNase_H (288)

Family: NurA (1)

Thermotoga maritima (1)

1a	NurA-1zupB01	B:43-285
1b	NurA-1zupB02	B:43-285

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9X261_THEMA | Q9X261)

molecular function
	GO:0003676		nucleic acid binding		Interacting selectively and non-covalently with any nucleic acid.

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	Sites
(no "Sites" information available for 1zup)

	Cis Peptide Bonds
		Gly A:171 - Pro A:172	[ RasMol ]
		Gly B:171 - Pro B:172	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (1, 11)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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