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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF A MAJOR NEMATODE C.ELEGANS SPECIFIC GST (CE01613)

Authors :   I. A. Kriksunov, Q. Liu, D. J. Schuller, A. M. Campbell, J. Barrett, P. M. Q. Hao

Date :   05 May 05 (Deposition) - 17 May 05 (Release) - 14 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym./Biol. Unit : A,B

Keywords :   Glutathione Transferase, C. Elegans, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. A. Kriksunov, Q. Liu, D. J. Schuller, A. M. Campbell, J. Barrett, P. M. Brophy, Q. Hao
Crystal Structure Of A Major Nematode C. Elegans Specific Gs (Ce01613)
To Be Published
PubMed: search

Molecule 1 - GLUTATHIONE S-TRANSFERASE 5
	Chains	:	A, B
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET23D(NOVAGEN)
	Expression System Strain	:	BL21 DE3 PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GST-5, CE01613
	Organism Scientific	:	CAENORHABDITIS ELEGANS
	Organism Taxid	:	6239
	Synonym	:	GST CLASS-SIGMA

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:9 , TRP A:39 , LYS A:43 , GLN A:52 , LEU A:53 , PRO A:54 , GLN A:65 , SER A:66 , HOH A:508 , HOH A:559 , HOH A:605 , HOH A:612 , HOH A:614 , HOH A:682 , HOH A:732 , HOH A:750 , ASP B:99	BINDING SITE FOR RESIDUE GSH A 501
2	AC2	SOFTWARE	ASP A:99 , PHE B:9 , TRP B:39 , LYS B:43 , GLN B:52 , LEU B:53 , PRO B:54 , GLN B:65 , SER B:66 , HOH B:513 , HOH B:582 , HOH B:593 , HOH B:651 , HOH B:652 , HOH B:660 , HOH B:666	BINDING SITE FOR RESIDUE GSH B 502

(no "SS Bond" information available for 1ZL9)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:53	-	Pro A:54
2	Leu B:53	-	Pro B:54

(no "SAP(SNP)/Variant" information available for 1ZL9)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GST5_CAEEL	2-81	2	A:2-81 B:2-81
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GST5_CAEEL	83-207	2	A:83-207 B:83-207

(no "Exon" information available for 1ZL9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:207
 aligned with GST5_CAEEL | Q09596 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       
           GST5_CAEEL     1 MVSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDFSKFPELKAHAEKIQAIPQIKKWIETRPVTPF 207
               SCOP domains d1zl9a1 A:1-79 automated matches                                               d1zl9a2 A:80-207 automated matches                                                                                               SCOP domains
               CATH domains 1zl9A01 A:1-77,A:192-207 Glutaredoxin                                        ------------------------------------------------------------------------------------------------------------------1zl9A01          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhh.........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: A:2-81 UniProt: 2-81                                             -GST_CTER  PDB: A:83-207 UniProt: 83-207                                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zl9 A   1 MVSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDFSKFPELKAHAEKIQAIPQIKKWIETRPVTPF 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:207
 aligned with GST5_CAEEL | Q09596 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       
           GST5_CAEEL     1 MVSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDFSKFPELKAHAEKIQAIPQIKKWIETRPVTPF 207
               SCOP domains d1zl9b1 B:1-79 automated matches                                               d1zl9b2 B:80-207 automated matches                                                                                               SCOP domains
               CATH domains 1zl9B01 B:1-77,B:192-207 Glutaredoxin                                        ------------------------------------------------------------------------------------------------------------------1zl9B01          CATH domains
           Pfam domains (1) ---GST_N-1zl9B03 B:4-75                                                    ---------------------------GST_C-1zl9B01 B:103-200                                                                           ------- Pfam domains (1)
           Pfam domains (2) ---GST_N-1zl9B04 B:4-75                                                    ---------------------------GST_C-1zl9B02 B:103-200                                                                           ------- Pfam domains (2)
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhh.........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: B:2-81 UniProt: 2-81                                             -GST_CTER  PDB: B:83-207 UniProt: 83-207                                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zl9 B   1 MVSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDFSKFPELKAHAEKIQAIPQIKKWIETRPVTPF 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: GST C-terminal domain-like (353)

Superfamily: GST C-terminal domain-like (353)

Family: automated matches (86)

Protein domain: automated matches (86)

Nematode (Caenorhabditis elegans) [TaxId: 6239] (2)

1a	d1zl9a2	A:80-207
1b	d1zl9b2	B:80-207

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: automated matches (347)

Protein domain: automated matches (347)

Nematode (Caenorhabditis elegans) [TaxId: 6239] (2)

2a	d1zl9a1	A:1-79
2b	d1zl9b1	B:1-79

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Caenorhabditis elegans. Organism_taxid: 6239. (2)

1a	1zl9A01	A:1-77,A:192-207
1b	1zl9B01	B:1-77,B:192-207

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GST_C (118)

Family: GST_C (102)

Caenorhabditis elegans (2)

1a	GST_C-1zl9B01	B:103-200
1b	GST_C-1zl9B02	B:103-200

Clan: Thioredoxin (367)

Family: GST_N (88)

Caenorhabditis elegans (2)

2a	GST_N-1zl9B03	B:4-75
2b	GST_N-1zl9B04	B:4-75

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (GST5_CAEEL | Q09596)

molecular function
	GO:0004364	glutathione transferase activity	Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Leu A:53 - Pro A:54	[ RasMol ]
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1tw9	CRYSTAL STRUCTURE OF A NEMATODE-SPECIFIC GLUTATHIONE-S- TRANSFERASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

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