Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  GLUTATHIONE TRANSFERASE-2, APO FORM, FROM THE NEMATODE HELIGMOSOMOIDES POLYGYRUS
 
Authors :  D. J. Schuller, Q. Liu, I. A. Kriksunov, A. M. Campbell, J. Barrett, P. M. Q. Hao
Date :  30 Jun 04  (Deposition) - 03 Aug 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Schuller, Q. Liu, I. A. Kriksunov, A. M. Campbell, J. Barrett, P. M. Brophy, Q. Hao
Crystal Structure Of A New Class Of Glutathione Transferase From The Model Human Hookworm Nematode Heligmosomoides Polygyrus.
Proteins V. 61 1024 2005
PubMed-ID: 16189827  |  Reference-DOI: 10.1002/PROT.20649
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE 2
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23D
    Expression System Strain: BL21 DE3 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: HELIGMOSOMOIDES POLYGYRUS
    Organism Taxid: 6339

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TW9)

(-) Sites  (0, 0)

(no "Site" information available for 1TW9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TW9)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Val A:51 -Pro A:52
2Val B:51 -Pro B:52
3Val C:51 -Pro C:52
4Val D:51 -Pro D:52
5Val E:51 -Pro E:52
6Val F:51 -Pro F:52
7Val G:51 -Pro G:52
8Val H:51 -Pro H:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TW9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TW9)

(-) Exons   (0, 0)

(no "Exon" information available for 1TW9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9a2 A:1-77 Class sigma GST                                               d1tw9a1 A:78-206 Class si               gma GST                                                                                   SCOP domains
               CATH domains 1tw9A01 A:1-75,A:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9A01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh---------------hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 A   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEM---------------DKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100 |       -       120       130       140       150       160       170       180       190       200      
                                                                                                                               102             118                                                                                        


Chain B from PDB  Type:PROTEIN  Length:188
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9b2 B:1-77 Class sigma GST                                               d1tw9b1 B:78-206 Class sig                  ma GST                                                                                SCOP domains
               CATH domains 1tw9B01 B:1-75,B:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9B01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.------------------..hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 B   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMK------------------TDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100  |      -         - |     130       140       150       160       170       180       190       200      
                                                                                                                                103                122                                                                                    


Chain C from PDB  Type:PROTEIN  Length:194
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9c2 C:1-77 Class sigma GST                                               d1tw9c1 C:78-206 Class sigma             GST                                                                                      SCOP domains
               CATH domains 1tw9C01 C:1-75,C:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9C01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....------------.....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 C   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYY------------KPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100     |   -       120       130       140       150       160       170       180       190       200      
                                                                                                                                   106          119                                                                                       


Chain D from PDB  Type:PROTEIN  Length:194
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9d2 D:1-77 Class sigma GST                                               d1tw9d1 D:78-206 Class sigma             GST                                                                                      SCOP domains
               CATH domains 1tw9D01 D:1-75,D:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9D01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...------------hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 D   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTY------------DKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100    |    -       120       130       140       150       160       170       180       190       200      
                                                                                                                                  105          118                                                                                        


Chain E from PDB  Type:PROTEIN  Length:193
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9e2 E:1-77 Class sigma GST                                               d1tw9e1 E:78-206 Class sigma G             ST                                                                                     SCOP domains
               CATH domains 1tw9E01 E:1-75,E:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9E01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhh...eeeeehhhhhhhhhh........eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh-------------...hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 E   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYYY-------------KTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100      |  -         -|      130       140       150       160       170       180       190       200      
                                                                                                                                    107           121                                                                                     


Chain F from PDB  Type:PROTEIN  Length:205
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9f2 F:1-77 Class sigma GST                                               d1tw9f1 F:78-206 Class sigma GST                                                                                                  SCOP domains
               CATH domains 1tw9F01 F:1-75,F:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9F01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-..hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 F   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYYYTALGFM-GDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100       110  | |  120       130       140       150       160       170       180       190       200      
                                                                                                                                          113 |                                                                                           
                                                                                                                                            115                                                                                           


Chain G from PDB  Type:PROTEIN  Length:189
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9g2 G:1-77 Class sigma GST                                               d1tw9g1 G:78-206 Class sig                 ma GST                                                                                 SCOP domains
               CATH domains 1tw9G01 G:1-75,G:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9G01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.-----------------...hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 G   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMK-----------------KTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100  |      -         -|      130       140       150       160       170       180       190       200      
                                                                                                                                103               121                                                                                     


Chain H from PDB  Type:PROTEIN  Length:191
 aligned with Q9NJQ6_HELPZ | Q9NJQ6 from UniProtKB/TrEMBL  Length:204

    Alignment length:206
                              1                                                                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198      
         Q9NJQ6_HELPZ     - --HYKLTYFNGRGAGECARQIFALADQKYEDVRLTQETFAPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSPADAYTDYRAEMKTYYYMALGFMTGDVDKLKTDVLLPARTKFLGFITKFPKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 204
               SCOP domains d1tw9h2 H:1-77 Class sigma GST                                               d1tw9h1 H:78-206 Class si               gma GST                                                                                   SCOP domains
               CATH domains 1tw9H01 H:1-75,H:191-206 Glutaredoxin                                      -------------------------------------------------------------------------------------------------------------------1tw9H01          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhh....eeeeehhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..---------------hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tw9 H   1 MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEM---------------DKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF 206
                                    10        20        30        40        50        60        70        80        90       100 |       -       120       130       140       150       160       170       180       190       200      
                                                                                                                               102             118
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Glutaredoxin (620)
(-)
Homologous Superfamily: Glutaredoxin (617)
(-)
Heligmosomoides polygyrus. Organism_taxid: 6339. (1)
1a1tw9A01A:1-75,A:191-206
1b1tw9B01B:1-75,B:191-206
1c1tw9C01C:1-75,C:191-206
1d1tw9D01D:1-75,D:191-206
1e1tw9E01E:1-75,E:191-206
1f1tw9F01F:1-75,F:191-206
1g1tw9G01G:1-75,G:191-206
1h1tw9H01H:1-75,H:191-206

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TW9)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9NJQ6_HELPZ | Q9NJQ6)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1tw9)
 
  Sites
(no "Sites" information available for 1tw9)
 
  Cis Peptide Bonds
    Val A:51 - Pro A:52   [ RasMol ]  
    Val B:51 - Pro B:52   [ RasMol ]  
    Val C:51 - Pro C:52   [ RasMol ]  
    Val D:51 - Pro D:52   [ RasMol ]  
    Val E:51 - Pro E:52   [ RasMol ]  
    Val F:51 - Pro F:52   [ RasMol ]  
    Val G:51 - Pro G:52   [ RasMol ]  
    Val H:51 - Pro H:52   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1tw9
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9NJQ6_HELPZ | Q9NJQ6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9NJQ6_HELPZ | Q9NJQ6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1TW9)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1TW9)