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Asym./Biol. Unit (Jmol Viewer)

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Title :   STRUCTURE OF HYDROGENATED RAT GAMMA E CRYSTALLIN IN H2O

Authors :   J. B. Artero, M. Hartlein, S. Mcsweeney, P. Timmins

Date :   22 Apr 05 (Deposition) - 08 Nov 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym./Biol. Unit : A

Keywords :   4 Greek Key Motifs, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. B. Artero, M. Hartlein, S. Mcsweeney, P. Timmins
A Comparison Of Refined X-Ray Structures Of Hydrogenated And Perdeuterated Rat Gammae-Crystallin In H2O And D2O.
Acta Crystallogr. , Sect. D V. 61 1541 2005
PubMed-ID: 16239733 | Reference-DOI: 10.1107/S0907444905028532
(for further references see the PDB file header)

Molecule 1 - GAMMA CRYSTALLIN E
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	GAMMA CRYSTALLIN 3-1, GAMMA-2

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:1001 , GLY A:1040 , LEU A:1080 , HOH A:3013 , HOH A:3045	BINDING SITE FOR RESIDUE ACT A 2378
2	AC2	SOFTWARE	GLU A:1007 , SER A:1030 , PRO A:1147 , GLY A:1148	BINDING SITE FOR RESIDUE ACT A 2382

(no "SS Bond" information available for 1ZGT)

(no "Cis Peptide Bond" information available for 1ZGT)

(no "SAP(SNP)/Variant" information available for 1ZGT)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CRYSTALLIN_BETA_GAMMA	PS50915	Crystallins beta and gamma 'Greek key' motif profile.	CRGE_RAT	2-40 41-83 88-128 129-171	4	A:1001-1039 A:1040-1082 A:1087-1127 A:1128-1170

(no "Exon" information available for 1ZGT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:173
 aligned with CRGE_RAT | P02528 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:173
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   
            CRGE_RAT      2 GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY  174
               SCOP domains d1zgta1 A:1001-1084 beta-Crystallin                                                 d1zgta2 A:1085-1173 beta-Crystallin                                                       SCOP domains
               CATH domains 1zgtA01 A:1001-1083 Crystallins                                                    1zgtA02 A:1084-1173 Crystallins                                                            CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------Crystall-1zgtA01 A:1088-1169                                                      ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------Crystall-1zgtA02 A:1088-1169                                                      ---- Pfam domains (2)
         Sec.struct. author .eeeeeeehhheeeeeee...............eeeeee.eeeeeee...eeeeeee..eee.hhhhhh.......eeeee......eeeeeee...eeeeeee.....hhhhhh......eeeeee..eeeeee...eeeeeee..eee.hhhhhh.......eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CRYSTALLIN_BETA_GAMMA  PDB: A:1001-1039CRYSTALLIN_BETA_GAMMA  PDB: A:1040-1082    ----CRYSTALLIN_BETA_GAMMA  PDB: A:1087-1127  CRYSTALLIN_BETA_GAMMA  PDB: A:1128-1170    --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1zgt A 1001 GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY 1173
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: gamma-Crystallin-like (65)

Superfamily: gamma-Crystallin-like (65)

Family: Crystallins/Ca-binding development proteins (34)

Protein domain: beta-Crystallin (11)

Norway rat (Rattus norvegicus), isoform E [TaxId: 10116] (6)

1a	d1zgta1	A:1001-1084
1b	d1zgta2	A:1085-1173

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Gamma-B Crystallin; domain 1 (45)

Homologous Superfamily: Crystallins (39)

Norway rat (Rattus norvegicus) (6)

1a	1zgtA02	A:1084-1173
1b	1zgtA01	A:1001-1083

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: gCrystallin (22)

Family: Crystall (21)

Rattus norvegicus (Rat) (4)

1a	Crystall-1zgtA01	A:1088-1169
1b	Crystall-1zgtA02	A:1088-1169

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CRGE_RAT | P02528)

molecular function
	GO:0005212	structural constituent of eye lens	The action of a molecule that contributes to the structural integrity of the lens of an eye.
biological process
	GO:0002088	lens development in camera-type eye	The process whose specific outcome is the progression of the lens over time, from its formation to the mature structure. The lens is a transparent structure in the eye through which light is focused onto the retina. An example of this process is found in Mus musculus.

Asymmetric/Biological Unit
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	CRGE_RAT \| P02528	:	1a5d 1zie 1ziq 1zir

1a5d	STRUCTURE OF THE RAT GAMMAE CRYSTALLIN AT 2.3A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

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