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(-) Description

Title :  CRYSTAL STRUCTURE OF NAD+-BOUND XYLITOL DEHYDROGENASE
 
Authors :  A. H. Ehrensberger, R. A. Elling, D. K. Wilson
Date :  19 Apr 05  (Deposition) - 28 Mar 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Keywords :  Rossmann Fold, Dinucleotide-Binding Domain, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. H. Ehrensberger, R. A. Elling, D. K. Wilson
Structure-Guided Engineering Of Xylitol Dehydrogenase Cosubstrate Specificity.
Structure V. 14 567 2006
PubMed-ID: 16531240  |  Reference-DOI: 10.1016/J.STR.2005.11.016
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - XYLITOL DEHYDROGENASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.1.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21*
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AB091690
    Organism Scientific: GLUCONOBACTER OXYDANS
    Organism Taxid: 442

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
2NAD8Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH B:3267 , HOH B:3277 , HOH D:5264 , HOH D:5271 , HOH D:5273 , HOH D:5288BINDING SITE FOR RESIDUE MG D 3264
02AC2SOFTWAREHOH A:2270 , HOH A:2275 , HOH A:2338 , HOH C:4265 , HOH C:4279 , HOH C:4446BINDING SITE FOR RESIDUE MG C 3265
03AC3SOFTWAREHOH E:6266 , HOH E:6272 , HOH E:6285 , HOH G:8267 , HOH G:8269 , HOH G:8274BINDING SITE FOR RESIDUE MG E 3266
04AC4SOFTWAREHOH F:7264 , HOH F:7265 , HOH F:7276 , HOH H:9266 , HOH H:9275 , HOH H:9277BINDING SITE FOR RESIDUE MG F 3267
05AC5SOFTWAREHOH C:4362 , HOH C:4376 , HOH C:4392 , HOH C:4428 , HOH C:4429 , HOH C:4430BINDING SITE FOR RESIDUE MG C 3268
06AC6SOFTWAREGLY A:14 , GLY A:16 , GLY A:17 , ASN A:18 , ILE A:19 , ASP A:38 , MET A:39 , CYS A:63 , ASP A:64 , VAL A:65 , ASN A:91 , ALA A:92 , GLY A:93 , ILE A:115 , THR A:142 , ALA A:143 , SER A:144 , TYR A:157 , LYS A:161 , PRO A:187 , GLY A:188 , MET A:190 , HOH A:2268 , HOH A:2385 , HOH A:2422BINDING SITE FOR RESIDUE NAD A 2263
07AC7SOFTWAREGLY B:14 , GLY B:16 , GLY B:17 , ASN B:18 , ILE B:19 , ASP B:38 , MET B:39 , CYS B:63 , ASP B:64 , VAL B:65 , ASN B:91 , ALA B:92 , GLY B:93 , ILE B:115 , THR B:142 , ALA B:143 , SER B:144 , TYR B:157 , LYS B:161 , PRO B:187 , GLY B:188 , MET B:190 , HOH B:3297 , HOH B:3343 , HOH B:3398 , HOH B:3418 , HOH B:3420 , HOH B:3431 , HOH B:3460BINDING SITE FOR RESIDUE NAD B 3263
08AC8SOFTWAREGLY C:14 , GLY C:16 , GLY C:17 , ASN C:18 , ILE C:19 , ASP C:38 , MET C:39 , CYS C:63 , ASP C:64 , VAL C:65 , ASN C:91 , ALA C:92 , GLY C:93 , ILE C:115 , THR C:142 , ALA C:143 , SER C:144 , TYR C:157 , LYS C:161 , PRO C:187 , MET C:190 , MET C:195 , HOH C:4267 , HOH C:4295 , HOH C:4321 , HOH C:4360 , HOH C:4366 , HOH C:4384 , HOH C:4387 , HOH C:4431 , HOH C:4432 , HOH C:4435 , HOH C:4507BINDING SITE FOR RESIDUE NAD C 4263
09AC9SOFTWAREGLY D:14 , GLY D:16 , GLY D:17 , ASN D:18 , ILE D:19 , ASP D:38 , MET D:39 , CYS D:63 , ASP D:64 , VAL D:65 , ASN D:91 , ALA D:92 , GLY D:93 , ILE D:115 , THR D:142 , ALA D:143 , SER D:144 , TYR D:157 , LYS D:161 , PRO D:187 , GLY D:188 , MET D:190 , MET D:195 , HOH D:5265 , HOH D:5392 , HOH D:5411 , HOH D:5451BINDING SITE FOR RESIDUE NAD D 5263
10BC1SOFTWAREGLY E:14 , GLY E:16 , GLY E:17 , ASN E:18 , ILE E:19 , ASP E:38 , MET E:39 , CYS E:63 , ASP E:64 , VAL E:65 , ASN E:91 , ALA E:92 , GLY E:93 , THR E:142 , ALA E:143 , SER E:144 , TYR E:157 , LYS E:161 , PRO E:187 , GLY E:188 , MET E:190 , MET E:195 , HOH E:6291 , HOH E:6376 , HOH E:6442BINDING SITE FOR RESIDUE NAD E 6263
11BC2SOFTWAREGLY F:14 , GLY F:16 , GLY F:17 , ASN F:18 , ILE F:19 , ASP F:38 , MET F:39 , CYS F:63 , ASP F:64 , VAL F:65 , ASN F:91 , ALA F:92 , GLY F:93 , THR F:142 , ALA F:143 , SER F:144 , TYR F:157 , LYS F:161 , PRO F:187 , GLY F:188 , MET F:190 , HOH F:7269 , HOH F:7365 , HOH F:7482BINDING SITE FOR RESIDUE NAD F 7263
12BC3SOFTWAREGLY G:14 , GLY G:16 , GLY G:17 , ASN G:18 , ILE G:19 , ASP G:38 , MET G:39 , CYS G:63 , ASP G:64 , VAL G:65 , ASN G:91 , ALA G:92 , GLY G:93 , THR G:142 , ALA G:143 , SER G:144 , TYR G:157 , LYS G:161 , PRO G:187 , GLY G:188 , MET G:190 , HOH G:8296 , HOH G:8379 , HOH G:8388 , HOH G:8451BINDING SITE FOR RESIDUE NAD G 8263
13BC4SOFTWAREGLY H:14 , GLY H:17 , ASN H:18 , ILE H:19 , ASP H:38 , MET H:39 , CYS H:63 , ASP H:64 , VAL H:65 , ASN H:91 , ALA H:92 , GLY H:93 , THR H:142 , ALA H:143 , SER H:144 , TYR H:157 , LYS H:161 , PRO H:187 , GLY H:188 , MET H:190 , HOH H:9267 , HOH H:9350 , HOH H:9352 , HOH H:9405 , HOH H:9443 , HOH H:9466BINDING SITE FOR RESIDUE NAD H 9263

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZEM)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:191 -Pro A:192
2Gly B:191 -Pro B:192
3Gly C:191 -Pro C:192
4Gly D:191 -Pro D:192
5Gly E:191 -Pro E:192
6Gly F:191 -Pro F:192
7Gly G:191 -Pro G:192
8Gly H:191 -Pro H:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZEM)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZEM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zema1 A:3-262 Xylitol dehydrogenase                                                                                                                                                                                                                                SCOP domains
               CATH domains 1zemA00 A:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem A   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain B from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemb_ B: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemB00 B:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem B   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain C from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemc_ C: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemC00 C:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem C   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain D from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemd_ D: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemD00 D:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem D   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain E from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zeme_ E: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemE00 E:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem E   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain F from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemf_ F: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemF00 F:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem F   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain G from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemg_ G: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemG00 G:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem G   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262


Chain H from PDB  Type:PROTEIN  Length:260
 aligned with Q8GR61_GLUOY | Q8GR61 from UniProtKB/TrEMBL  Length:262

    Alignment length:260
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
         Q8GR61_GLUOY     3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
               SCOP domains d1zemh_ H: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1zemH00 H:3-262 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zem H   3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZEM)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q8GR61_GLUOY | Q8GR61)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1zem
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