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(-) Description

Title :  SULFOLOBUS SOLFATARICUS SWI2/SNF2 ATPASE CORE DOMAIN
 
Authors :  H. Duerr, C. Koerner, M. Mueller, V. Hickmann, K. P. Hopfner
Date :  22 Mar 05  (Deposition) - 03 May 05  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (2x)
Keywords :  Hydrolase, Recombination, Hydrolase-Recombination Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Duerr, C. Koerner, M. Mueller, V. Hickmann, K. P. Hopfner
X-Ray Structures Of The Sulfolobus Solfataricus Swi2/Snf2 Atpase Core And Its Complex With Dna
Cell(Cambridge, Mass. ) V. 121 363 2005
PubMed-ID: 15882619  |  Reference-DOI: 10.1016/J.CELL.2005.03.026

(-) Compounds

Molecule 1 - HELICASE OF THE SNF2/RAD54 FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUE 431-789, 800-906
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 273057
    Strain: P2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1HG3Ligand/IonMERCURY (II) ION
2PO48Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2PO48Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2PO416Ligand/IonPHOSPHATE ION
Biological Unit 3 (1, 16)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2PO416Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:499 , LEU A:504 , THR A:540BINDING SITE FOR RESIDUE HG A 951
02AC2SOFTWARECYS A:670 , LYS A:732 , SER A:857BINDING SITE FOR RESIDUE HG A 952
03AC3SOFTWARECYS A:466BINDING SITE FOR RESIDUE HG A 953
04AC4SOFTWARELEU A:461 , GLY A:462 , PHE A:463 , LEU A:613 , GLU A:618 , LYS A:622 , PHE A:623BINDING SITE FOR RESIDUE PO4 A 954
05AC5SOFTWAREGLN A:565 , ASN A:667 , ARG A:735BINDING SITE FOR RESIDUE PO4 A 955
06AC6SOFTWARELYS A:761 , ARG A:764 , TYR A:779BINDING SITE FOR RESIDUE PO4 A 956
07AC7SOFTWAREGLY A:472 , LEU A:473 , GLY A:474 , LYS A:475 , THR A:476 , PO4 A:958BINDING SITE FOR RESIDUE PO4 A 957
08AC8SOFTWARETHR A:476 , ASP A:562 , LEU A:589 , PO4 A:957BINDING SITE FOR RESIDUE PO4 A 958
09AC9SOFTWAREGLU A:675 , LYS A:721 , THR A:817 , THR A:847 , ARG A:848BINDING SITE FOR RESIDUE PO4 A 959
10BC1SOFTWARELYS A:663 , GLU A:665 , TRP A:828 , ASP A:835 , ASP A:839 , LYS A:854BINDING SITE FOR RESIDUE PO4 A 960
11BC2SOFTWARELYS A:651 , TYR A:652 , LYS A:721 , ASN A:820 , ASN A:849BINDING SITE FOR RESIDUE PO4 A 961

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z6A)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:493 -Pro A:494

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z6A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z6A)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z6A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
 aligned with Q97XQ5_SULSO | Q97XQ5 from UniProtKB/TrEMBL  Length:124

    Alignment length:485
                                                                                                                                                                                                                                                                                                                                                      1   5                                                 6                                                                                                                    
                                     -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -         -    |   |-         -         -         -         -        |7        17        27        37        47        57        67        77        87        97       107       117     
         Q97XQ5_SULSO     - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRTLP-------------------------------------------------DDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 122
               SCOP domains ------------d1z6aa1 A:432-661 Helicase of the SNF2/Rad54 hamily                                                                                                                                                                                   d1z6aa2 A:662-903 Helicase of the SNF2/Rad54 hamily                                                                                                                                                                                               - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Helicase_C-1z6aA01 A:788-845                              ----------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhhh....eee........hhhhh.eeee.hhhhhh..........eeeee.........hhhhhhhh.....eeeee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhh..ee.....hhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhh.......eee..............eeee.....-----hhhhhhhhh......eeeeeeee..hhhhhhhhhhhh..........hhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z6a A   1 LVPRGSHMASKSFQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW-----DQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 904
                                    11||     439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829     | 839       849       859       869       879       889       899     
                                    9|||                                                                                                                                                                                                                                                                                                                                                                                                           829   835                                                                     
                                    11||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                     12|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                     431                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         


Chain A from PDB  Type:PROTEIN  Length:480
 aligned with Q97XQ7_SULSO | Q97XQ7 from UniProtKB/TrEMBL  Length:802

    Alignment length:528
                                                                                                                                                                                                                                                                                                                                                                                                                                                             791                        792       802                                                                       
                                   381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791         -         -      |795      |  -         -         -         -         -         -         -        
         Q97XQ7_SULSO   372 IVELGGNLVEIDEKSLQKIKDLLYKIKSKKIDKIDILRESLLGDIEINDELLDRLRGNKSFQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDRE--------------------------CSHAVILFDII-----------------------------------------------------------------------   -
               SCOP domains --------- --                                               -d1z6aa1 A:432-661 Helicase of the SNF2/Rad54 hamily                                                                                                                                                                                   d1z6aa2 A:662-903 Helicase of the SNF2/Rad54 hamily                                                                                                                                                                                          - SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------- --                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Helicase_C-1z6aA01 A:788-845                         ----------------------------------------------------------- Pfam domains
         Sec.struct. author .........-..-----------------------------------------------..............hhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhhh....eee........hhhhh.eeee.hhhhhh..........eeeee.........hhhhhhhh.....eeeee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhh..ee.....hhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhh.......eee..............eeee.....hhhhhhhhh......eeeeeeee..hhhhhhhhhhhh..........hhhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1z6a A   1 LVPRGSHMA-SK-----------------------------------------------SFQLLEPYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 904
                                    |-||       -         -         -         -       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       836       846       856       866       876       886       896        
                                    9 ||                                             431                                                                                                                                                                                                                                                                                                                                                                                                           829|                                                                     
                                     11|                                                                                                                                                                                                                                                                                                                                                                                                                                                            835                                                                     
                                      12
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z6A)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (2, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q97XQ7_SULSO | Q97XQ7)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

Chain A   (Q97XQ5_SULSO | Q97XQ5)
molecular function
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

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  1z6a
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  Q97XQ5_SULSO | Q97XQ5
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  Q97XQ7_SULSO | Q97XQ7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q97XQ5_SULSO | Q97XQ5: 1z63
UniProtKB/TrEMBL
        Q97XQ5_SULSO | Q97XQ5: 1z5z
        Q97XQ7_SULSO | Q97XQ7: 1z63

(-) Related Entries Specified in the PDB File

1z5z 1z63