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(-) Description

Title :  PUTATIVE TRANSCRIPTIONAL REGULATOR YTFH FROM SALMONELLA TYPHIMURIUM
 
Authors :  J. Osipiuk, P. Quartey, L. Lezondra, S. Moy, F. Collart, A. Joachimiak, Center For Structural Genomics (Mcsg)
Date :  25 Feb 05  (Deposition) - 05 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Transcriptional Regulator, Reductive Methylation, Dimethyl Lysine, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, P. Quartey, L. Lezondra, S. Moy, F. Collart, A. Joachimiak
X-Ray Crystal Structure Of Putative Transcriptional Regulator Ytfh From Salmonella Typhimurium.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TRANSCRIPTIONAL REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YTFH
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MLY6Mod. Amino AcidN-DIMETHYL-LYSINE
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:48 , SER B:49 , HIS B:87 , VAL B:88BINDING SITE FOR RESIDUE CL B 201
2AC2SOFTWAREPHE A:48 , HIS A:87 , VAL A:88BINDING SITE FOR RESIDUE CL A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YYV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:84 -Pro A:85
2Val B:84 -Pro B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YYV)

(-) Exons   (0, 0)

(no "Exon" information available for 1YYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:114
 aligned with Q7CP90_SALTY | Q7CP90 from UniProtKB/TrEMBL  Length:128

    Alignment length:114
                                    18        28        38        48        58        68        78        88        98       108       118    
         Q7CP90_SALTY     9 QLREGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDKVAALADWIELNLPQVLAQRE 122
               SCOP domains d1yyva1 A:9-122 Putative transcriptional regulator YtfH                                                            SCOP domains
               CATH domains 1yyvA00 A:9-122 'winged helix' repressor DNA binding domain                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhh...hhhhhhhhhhhhhhhh.eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1yyv A   9 QLREGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRkmGGVSEkmLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDkVAALADWIELNLPQVLAQRE 122
                                    18        28        38        48     || 58  ||    68        78        88        98   |   108       118    
                                                                        54-MLY  ||                                     102-MLY                
                                                                         55-MSE ||                                                            
                                                                               61-MLY                                                         
                                                                                62-MSE                                                        


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with Q7CP90_SALTY | Q7CP90 from UniProtKB/TrEMBL  Length:128

    Alignment length:112
                                    21        31        41        51        61        71        81        91       101       111       121  
         Q7CP90_SALTY    12 EGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDKVAALADWIELNLPQVLAQRER 123
               SCOP domains d1yyvb_ B: Putative transcriptional regulator YtfH                                                               SCOP domains
               CATH domains 1yyvB00 B:12-123 'winged helix' repressor DNA binding domain                                                     CATH domains
           Pfam domains (1) ----------------HxlR-1yyvB01 B:28-118                                                                      ----- Pfam domains (1)
           Pfam domains (2) ----------------HxlR-1yyvB02 B:28-118                                                                      ----- Pfam domains (2)
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhh...hhhhhhhhhhhhhhh..eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1yyv B  12 EGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRkmGGVSEkmLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDkVAALADWIELNLPQVLAQRER 123
                                    21        31        41        51  ||    61|       71        81        91       101|      111       121  
                                                                     54-MLY  ||                                     102-MLY                 
                                                                      55-MSE ||                                                             
                                                                            61-MLY                                                          
                                                                             62-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: HTH (544)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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