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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF GROUP B STREPTOCOCCUS ALPHA C PROTEIN
 
Authors :  T. C. Auperin, G. R. Bolduc, M. J. Baron, A. Heroux, D. J. Filman, L. C. Mad J. M. Hogle
Date :  18 Feb 05  (Deposition) - 08 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Sandwich, Fibronectin Fold, Antiparallel Three-Helix Bundle, Surface Active Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Auperin, G. R. Bolduc, M. J. Baron, A. Heroux, D. J. Filman, L. C. Madoff, J. M. Hogle
Crystal Structure Of The N-Terminal Domain Of The Group B Streptococcus Alpha C Protein.
J. Biol. Chem. V. 280 18245 2005
PubMed-ID: 15753100  |  Reference-DOI: 10.1074/JBC.M412391200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - C PROTEIN ALPHA-ANTIGEN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN
    Gene: BCA
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 205921
    Strain: A909

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1DTU1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
2GOL2Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:104 , GLY A:117 , GLY A:136 , GLU A:137 , GLY A:139 , HOH A:393 , HOH A:451 , HOH A:512BINDING SITE FOR RESIDUE DTU A 1001
2AC2SOFTWARELYS A:144 , GLN A:148 , ILE A:149 , HOH A:426 , HOH A:428BINDING SITE FOR RESIDUE GOL A 2001
3AC3SOFTWARESER A:153 , LYS A:167 , GLU A:220 , HOH A:328 , HOH A:414BINDING SITE FOR RESIDUE GOL A 2002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YWM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YWM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YWM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YWM)

(-) Exons   (0, 0)

(no "Exon" information available for 1YWM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
 aligned with BCA_STRA1 | Q02192 from UniProtKB/Swiss-Prot  Length:1020

    Alignment length:180
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236
            BCA_STRA1    57 STIPGSAATLNTSITKNIQNGNAYIDLYDVKLGKIDPLQLIVLEQGFTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIYDSTTLRDKIEEVRTNANDPKWTEESRTEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLVLSVPDKDKYDPT 236
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains AlphaC_N-1ywmA01 A:57-225                                                                                                                                                ----------- Pfam domains
         Sec.struct. author .......eee.......ee..eeeeehhhhhh...hhhh.eee....eeeeeeee..eee.hhhhh...eeeeeeeeee...............eeeeeeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ywm A  57 STIPGSAATLNTSITKNIQNGNAYIDLYDVKLGKIDPLQLIVLEQGFTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIYDSTTLRDKIEEVRTNANDPKWTEESRTEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLVLKLAAALEHHHH 236
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1YWM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YWM)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: AlphaC_N] (2)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BCA_STRA1 | Q02192)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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        BCA_STRA1 | Q02192: 2o0i

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