1YWH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF UROKINASE PLASMINOGEN ACTIVATOR RECEPTOR

Authors :   P. Llinas, M. H. Le Du, H. Gardsvoll, K. Dano, M. Ploug, B. Gilquin, E. A. A. Menez

Date :   18 Feb 05 (Deposition) - 10 May 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P  (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H  (1x)
Biol. Unit 3: I,J,K,L,M,N,O,P  (1x)

Keywords :   Upar, Three-Finger Fold, Protein-Peptide Complex, Hydrolase Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Llinas, M. H. Le Du, H. Gardsvoll, K. Dano, M. Ploug, B. Gilquin, E. A. Stura, A. Menez
Crystal Structure Of The Human Urokinase Plasminogen Activator Receptor Bound To An Antagonist Peptide
Embo J. V. 24 1655 2005
PubMed-ID: 15861141 | Reference-DOI: 10.1038/SJ.EMBOJ.7600635

Molecule 1 - UROKINASE PLASMINOGEN ACTIVATOR SURFACE RECEPTOR
	Chains	:	A, C, E, G, I, K, M, O
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Common	:	FRUIT FLY
	Expression System Plasmid	:	PMTC-SUPAR
	Expression System Taxid	:	7227
	Expression System Vector Type	:	PLASMID
	Gene	:	PLAUR, MO3, UPAR
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	UPAR, U- PAR, MONOCYTE ACTIVATION ANTIGEN MO3, CD87 ANTIGEN

Molecule 2 - ANTAGONIST PEPTIDE
	Chains	:	B, D, F, H, J, L, N, P
	Engineered	:	YES
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P
Biological Unit 1 (1x)	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P
Biological Unit 2 (1x)	:	A	B	C	D	E	F	G	H
Biological Unit 3 (1x)	:									I	J	K	L	M	N	O	P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (9, 108)

No.	Name	Count	Type	Full Name
1	ALC	8	Mod. Amino Acid	2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
2	BMA	4	Ligand/Ion	BETA-D-MANNOSE
3	DLY	8	Mod. Amino Acid	D-LYSINE
4	DSN	8	Mod. Amino Acid	D-SERINE
5	FUC	12	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	8	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	31	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	8	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	SO4	21	Ligand/Ion	SULFATE ION

Biological Unit 1 (9, 108)

No.	Name	Count	Type	Full Name
1	ALC	8	Mod. Amino Acid	2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
2	BMA	4	Ligand/Ion	BETA-D-MANNOSE
3	DLY	8	Mod. Amino Acid	D-LYSINE
4	DSN	8	Mod. Amino Acid	D-SERINE
5	FUC	12	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	8	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	31	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	8	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	SO4	21	Ligand/Ion	SULFATE ION

Biological Unit 2 (7, 50)

No.	Name	Count	Type	Full Name
1	ALC	4	Mod. Amino Acid	2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
2	BMA	-1	Ligand/Ion	BETA-D-MANNOSE
3	DLY	4	Mod. Amino Acid	D-LYSINE
4	DSN	4	Mod. Amino Acid	D-SERINE
5	FUC	7	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	16	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	2	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	SO4	13	Ligand/Ion	SULFATE ION

Biological Unit 3 (9, 58)

No.	Name	Count	Type	Full Name
1	ALC	4	Mod. Amino Acid	2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
2	BMA	4	Ligand/Ion	BETA-D-MANNOSE
3	DLY	4	Mod. Amino Acid	D-LYSINE
4	DSN	4	Mod. Amino Acid	D-SERINE
5	FUC	5	Ligand/Ion	ALPHA-L-FUCOSE
6	MAN	8	Ligand/Ion	ALPHA-D-MANNOSE
7	NAG	15	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
8	NDG	6	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
9	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (84, 84)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:52 , NAG A:315 , FUC A:316 , HOH A:831	BINDING SITE FOR RESIDUE NAG A 314
02	AC2	SOFTWARE	NAG A:314 , FUC A:316	BINDING SITE FOR RESIDUE NAG A 315
03	AC3	SOFTWARE	SER A:81 , GLY A:82 , SER A:117 , GLU A:119 , NAG A:314 , NAG A:315	BINDING SITE FOR RESIDUE FUC A 316
04	AC4	SOFTWARE	ASN A:162 , ASP A:163 , PHE A:211 , HOH A:850	BINDING SITE FOR RESIDUE NDG A 317
05	AC5	SOFTWARE	ASN A:172	BINDING SITE FOR RESIDUE NAG A 321
06	AC6	SOFTWARE	ASN C:52 , FUC C:315	BINDING SITE FOR RESIDUE NAG C 314
07	AC7	SOFTWARE	SER C:117 , GLU C:119 , NAG C:314	BINDING SITE FOR RESIDUE FUC C 315
08	AC8	SOFTWARE	ASN C:162	BINDING SITE FOR RESIDUE NAG C 316
09	AC9	SOFTWARE	ASN C:172 , HOH C:876	BINDING SITE FOR RESIDUE NAG C 321
10	BC1	SOFTWARE	ASN C:233 , HIS C:260 , NAG C:332 , FUC C:336 , HOH C:851	BINDING SITE FOR RESIDUE NAG C 331
11	BC2	SOFTWARE	NAG C:331	BINDING SITE FOR RESIDUE NAG C 332
12	BC3	SOFTWARE	THR C:226 , NAG C:331	BINDING SITE FOR RESIDUE FUC C 336
13	BC4	SOFTWARE	ASN E:52 , NAG E:315 , FUC E:316	BINDING SITE FOR RESIDUE NAG E 314
14	BC5	SOFTWARE	NAG E:314 , FUC E:316	BINDING SITE FOR RESIDUE NAG E 315
15	BC6	SOFTWARE	SER E:117 , GLU E:119 , NAG E:314 , NAG E:315 , HOH E:831	BINDING SITE FOR RESIDUE FUC E 316
16	BC7	SOFTWARE	ILE E:130 , GLN E:131 , ASN E:162 , PHE E:211	BINDING SITE FOR RESIDUE NAG E 317
17	BC8	SOFTWARE	ASN E:172 , FUC E:326	BINDING SITE FOR RESIDUE NAG E 321
18	BC9	SOFTWARE	THR E:173 , NAG E:321	BINDING SITE FOR RESIDUE FUC E 326
19	CC1	SOFTWARE	ASN G:52 , FUC G:315 , HOH G:889	BINDING SITE FOR RESIDUE NAG G 314
20	CC2	SOFTWARE	THR G:67 , SER G:117 , GLU G:119 , NAG G:314	BINDING SITE FOR RESIDUE FUC G 315
21	CC3	SOFTWARE	ASN G:162 , NAG G:317	BINDING SITE FOR RESIDUE NAG G 316
22	CC4	SOFTWARE	NAG G:316	BINDING SITE FOR RESIDUE NAG G 317
23	CC5	SOFTWARE	ASN G:172	BINDING SITE FOR RESIDUE NAG G 321
24	CC6	SOFTWARE	THR G:228 , ASN G:233 , HIS G:260 , FUC G:336 , HOH G:841 , HOH G:842	BINDING SITE FOR RESIDUE NDG G 331
25	CC7	SOFTWARE	NDG G:331	BINDING SITE FOR RESIDUE FUC G 336
26	CC8	SOFTWARE	ASN I:52 , VAL I:69 , FUC I:315 , HOH I:858	BINDING SITE FOR RESIDUE NAG I 314
27	CC9	SOFTWARE	ARG I:83 , SER I:117 , GLU I:119 , NAG I:314	BINDING SITE FOR RESIDUE FUC I 315
28	DC1	SOFTWARE	ASN I:162 , PHE I:211 , NAG I:317	BINDING SITE FOR RESIDUE NDG I 316
29	DC2	SOFTWARE	NDG I:316 , BMA I:318	BINDING SITE FOR RESIDUE NAG I 317
30	DC3	SOFTWARE	NAG I:317 , MAN I:319 , MAN I:320	BINDING SITE FOR RESIDUE BMA I 318
31	DC4	SOFTWARE	BMA I:318 , HOH I:824	BINDING SITE FOR RESIDUE MAN I 319
32	DC5	SOFTWARE	BMA I:318	BINDING SITE FOR RESIDUE MAN I 320
33	DC6	SOFTWARE	ASN I:172	BINDING SITE FOR RESIDUE NAG I 321
34	DC7	SOFTWARE	ASN I:233 , HIS I:260 , FUC I:336 , HOH I:855	BINDING SITE FOR RESIDUE NAG I 331
35	DC8	SOFTWARE	THR I:226 , GLY I:227 , ASN I:233 , NAG I:331	BINDING SITE FOR RESIDUE FUC I 336
36	DC9	SOFTWARE	ASN K:52 , NAG K:315 , FUC K:316	BINDING SITE FOR RESIDUE NAG K 314
37	EC1	SOFTWARE	NAG K:314	BINDING SITE FOR RESIDUE NAG K 315
38	EC2	SOFTWARE	SER K:117 , PRO K:118 , GLU K:119 , NAG K:314	BINDING SITE FOR RESIDUE FUC K 316
39	EC3	SOFTWARE	ASN K:162 , PHE K:211 , NAG K:318	BINDING SITE FOR RESIDUE NDG K 317
40	EC4	SOFTWARE	NDG K:317 , BMA K:319	BINDING SITE FOR RESIDUE NAG K 318
41	EC5	SOFTWARE	NAG K:318 , MAN K:320 , MAN K:321	BINDING SITE FOR RESIDUE BMA K 319
42	EC6	SOFTWARE	BMA K:319	BINDING SITE FOR RESIDUE MAN K 320
43	EC7	SOFTWARE	BMA K:319 , HOH K:836	BINDING SITE FOR RESIDUE MAN K 321
44	EC8	SOFTWARE	ASN K:172	BINDING SITE FOR RESIDUE NAG K 322
45	EC9	SOFTWARE	ASN K:233	BINDING SITE FOR RESIDUE NDG K 331
46	FC1	SOFTWARE	ASN M:52 , FUC M:315 , HOH M:834	BINDING SITE FOR RESIDUE NAG M 314
47	FC2	SOFTWARE	SER M:117 , GLU M:119 , NAG M:314	BINDING SITE FOR RESIDUE FUC M 315
48	FC3	SOFTWARE	ASN M:162 , PHE M:211 , NAG M:317	BINDING SITE FOR RESIDUE NDG M 316
49	FC4	SOFTWARE	NDG M:316 , BMA M:318 , HOH M:872	BINDING SITE FOR RESIDUE NAG M 317
50	FC5	SOFTWARE	NAG M:317 , MAN M:319 , MAN M:320	BINDING SITE FOR RESIDUE BMA M 318
51	FC6	SOFTWARE	BMA M:318	BINDING SITE FOR RESIDUE MAN M 319
52	FC7	SOFTWARE	BMA M:318 , HOH M:825	BINDING SITE FOR RESIDUE MAN M 320
53	FC8	SOFTWARE	ASN M:172 , NAG M:322 , HOH M:845 , HOH M:873	BINDING SITE FOR RESIDUE NAG M 321
54	FC9	SOFTWARE	NAG M:321	BINDING SITE FOR RESIDUE NAG M 322
55	GC1	SOFTWARE	THR M:228 , ASN M:233 , HIS M:260 , HOH M:832	BINDING SITE FOR RESIDUE NAG M 331
56	GC2	SOFTWARE	ASN O:52 , FUC O:315 , HOH O:822	BINDING SITE FOR RESIDUE NAG O 314
57	GC3	SOFTWARE	SER O:117 , GLU O:119 , NAG O:314	BINDING SITE FOR RESIDUE FUC O 315
58	GC4	SOFTWARE	ASN O:162 , PHE O:211 , NAG O:317	BINDING SITE FOR RESIDUE NDG O 316
59	GC5	SOFTWARE	NDG O:316 , BMA O:318	BINDING SITE FOR RESIDUE NAG O 317
60	GC6	SOFTWARE	NAG O:317 , MAN O:319 , MAN O:320	BINDING SITE FOR RESIDUE BMA O 318
61	GC7	SOFTWARE	BMA O:318 , HOH O:814 , HOH O:871	BINDING SITE FOR RESIDUE MAN O 319
62	GC8	SOFTWARE	BMA O:318 , HOH O:835	BINDING SITE FOR RESIDUE MAN O 320
63	GC9	SOFTWARE	ASN O:172	BINDING SITE FOR RESIDUE NDG O 321
64	HC1	SOFTWARE	LYS A:7 , ARG C:13	BINDING SITE FOR RESIDUE SO4 A 801
65	HC2	SOFTWARE	LYS E:7 , ARG G:13 , HOH G:835	BINDING SITE FOR RESIDUE SO4 G 802
66	HC3	SOFTWARE	LYS K:7 , ARG M:13	BINDING SITE FOR RESIDUE SO4 K 803
67	HC4	SOFTWARE	ARG I:13 , LYS O:7	BINDING SITE FOR RESIDUE SO4 I 804
68	HC5	SOFTWARE	ARG A:53 , PRO A:151 , HIS A:249 , ALA A:250 , HIS A:251 , HOH A:829	BINDING SITE FOR RESIDUE SO4 A 805
69	HC6	SOFTWARE	ARG C:53 , HIS C:249 , ALA C:250 , HIS C:251	BINDING SITE FOR RESIDUE SO4 C 806
70	HC7	SOFTWARE	GLU E:49 , LYS E:50 , PRO E:151 , HIS E:249 , ALA E:250 , HIS E:251 , HOH E:826 , HOH E:908	BINDING SITE FOR RESIDUE SO4 E 807
71	HC8	SOFTWARE	LYS G:50 , ARG G:53 , HIS G:249 , ALA G:250 , HIS G:251	BINDING SITE FOR RESIDUE SO4 G 808
72	HC9	SOFTWARE	ARG I:53 , PRO I:151 , HIS I:249 , ALA I:250 , HIS I:251	BINDING SITE FOR RESIDUE SO4 I 809
73	IC1	SOFTWARE	GLU K:49 , ARG K:53 , PRO K:151 , GLN K:248 , HIS K:249 , ALA K:250 , HIS K:251 , HOH K:823	BINDING SITE FOR RESIDUE SO4 K 810
74	IC2	SOFTWARE	LYS M:50 , ARG M:53 , HIS M:249 , ALA M:250 , HIS M:251	BINDING SITE FOR RESIDUE SO4 M 811
75	IC3	SOFTWARE	GLU O:49 , ARG O:53 , PRO O:151 , GLN O:248 , HIS O:249 , ALA O:250 , HIS O:251	BINDING SITE FOR RESIDUE SO4 O 812
76	IC4	SOFTWARE	ARG A:58 , GLN A:111 , ARG I:58 , GLN I:111	BINDING SITE FOR RESIDUE SO4 A 813
77	IC5	SOFTWARE	ARG C:58 , GLN C:111 , ARG O:58 , GLN O:111	BINDING SITE FOR RESIDUE SO4 C 814
78	IC6	SOFTWARE	ARG E:58 , GLN E:111 , ARG M:58 , GLN M:111	BINDING SITE FOR RESIDUE SO4 E 815
79	IC7	SOFTWARE	ARG G:58 , GLN G:111 , HOH G:828 , ARG K:58 , GLN K:111	BINDING SITE FOR RESIDUE SO4 G 816
80	IC8	SOFTWARE	THR G:164 , HIS G:166 , LYS G:198 , PHE G:256 , SER G:257	BINDING SITE FOR RESIDUE SO4 G 817
81	IC9	SOFTWARE	THR C:164 , HIS C:166 , ALA C:255 , PHE C:256 , SER C:257	BINDING SITE FOR RESIDUE SO4 C 818
82	JC1	SOFTWARE	THR M:164 , HIS M:166 , PHE M:256 , SER M:257	BINDING SITE FOR RESIDUE SO4 M 819
83	JC2	SOFTWARE	TRP E:129 , THR E:164 , HIS E:166 , PHE E:256 , SER E:257	BINDING SITE FOR RESIDUE SO4 E 820
84	JC3	SOFTWARE	TRP I:129 , THR I:164 , HIS I:166 , LYS I:198 , PHE I:256 , SER I:257	BINDING SITE FOR RESIDUE SO4 I 821

Asymmetric Unit

No.	Residues
1	A:3	-	A:24
2	A:6	-	A:12
3	A:17	-	A:45
4	A:71	-	A:76
5	A:95	-	A:122
6	A:98	-	A:105
7	A:115	-	A:147
8	A:153	-	A:170
9	A:171	-	A:176
10	A:194	-	A:222
11	A:197	-	A:205
12	A:215	-	A:241
13	A:247	-	A:265
14	A:266	-	A:271
15	C:3	-	C:24
16	C:6	-	C:12
17	C:17	-	C:45
18	C:71	-	C:76
19	C:95	-	C:122
20	C:98	-	C:105
21	C:115	-	C:147
22	C:153	-	C:170
23	C:171	-	C:176
24	C:194	-	C:222
25	C:197	-	C:205
26	C:215	-	C:241
27	C:247	-	C:265
28	C:266	-	C:271
29	E:3	-	E:24
30	E:6	-	E:12
31	E:17	-	E:45
32	E:71	-	E:76
33	E:95	-	E:122
34	E:98	-	E:105
35	E:115	-	E:147
36	E:153	-	E:170
37	E:171	-	E:176
38	E:194	-	E:222
39	E:197	-	E:205
40	E:215	-	E:241
41	E:247	-	E:265
42	E:266	-	E:271
43	G:3	-	G:24
44	G:6	-	G:12
45	G:17	-	G:45
46	G:71	-	G:76
47	G:95	-	G:122
48	G:98	-	G:105
49	G:115	-	G:147
50	G:153	-	G:170
51	G:171	-	G:176
52	G:194	-	G:222
53	G:197	-	G:205
54	G:215	-	G:241
55	G:247	-	G:265
56	G:266	-	G:271
57	I:3	-	I:24
58	I:6	-	I:12
59	I:17	-	I:45
60	I:71	-	I:76
61	I:95	-	I:122
62	I:98	-	I:105
63	I:115	-	I:147
64	I:153	-	I:170
65	I:171	-	I:176
66	I:194	-	I:222
67	I:197	-	I:205
68	I:215	-	I:241
69	I:247	-	I:265
70	I:266	-	I:271
71	K:3	-	K:24
72	K:6	-	K:12
73	K:17	-	K:45
74	K:71	-	K:76
75	K:95	-	K:122
76	K:98	-	K:105
77	K:115	-	K:147
78	K:153	-	K:170
79	K:171	-	K:176
80	K:194	-	K:222
81	K:197	-	K:205
82	K:215	-	K:241
83	K:247	-	K:265
84	K:266	-	K:271
85	M:3	-	M:24
86	M:6	-	M:12
87	M:17	-	M:45
88	M:71	-	M:76
89	M:95	-	M:122
90	M:98	-	M:105
91	M:115	-	M:147
92	M:153	-	M:170
93	M:171	-	M:176
94	M:194	-	M:222
95	M:197	-	M:205
96	M:215	-	M:241
97	M:247	-	M:265
98	M:266	-	M:271
99	O:3	-	O:24
100	O:6	-	O:12
101	O:17	-	O:45
102	O:71	-	O:76
103	O:95	-	O:122
104	O:98	-	O:105
105	O:115	-	O:147
106	O:153	-	O:170
107	O:171	-	O:176
108	O:194	-	O:222
109	O:197	-	O:205
110	O:215	-	O:241
111	O:247	-	O:265
112	O:266	-	O:271

Asymmetric Unit

No.	Residues
1	Cys A:153	-	Pro A:154
2	Cys C:153	-	Pro C:154
3	Glu C:230	-	Pro C:231
4	Cys E:153	-	Pro E:154
5	Glu E:230	-	Pro E:231
6	Cys G:153	-	Pro G:154
7	Glu G:230	-	Pro G:231
8	Cys I:153	-	Pro I:154
9	Glu I:230	-	Pro I:231
10	Cys K:153	-	Pro K:154
11	Glu K:230	-	Pro K:231
12	Cys M:153	-	Pro M:154
13	Glu M:230	-	Pro M:231
14	Cys O:153	-	Pro O:154
15	Glu O:230	-	Pro O:231

Asymmetric Unit (6, 41)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_016322	E	55	G	UPAR_HUMAN	Polymorphism	4251813	A/C/E/G/I/K/M/O	E	33	G
2	UniProt	VAR_016323	T	86	A	UPAR_HUMAN	Polymorphism	399145	A/C/E/G/I/K/M/O	T	64	A
3	UniProt	VAR_016324	R	105	Q	UPAR_HUMAN	Polymorphism	4251878	I	R	83	Q
4	UniProt	VAR_016325	K	220	R	UPAR_HUMAN	Polymorphism	2302524	A/C/E/G/I/K/M/O	K	198	R
5	UniProt	VAR_016326	N	281	K	UPAR_HUMAN	Polymorphism	4251921	A/C/E/G/I/K/M/O	N	259	K
6	UniProt	VAR_052698	D	297	A	UPAR_HUMAN	Polymorphism	16976608	A/C/E/G/I/K/M/O	D	275	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (6, 41)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_016322	E	55	G	UPAR_HUMAN	Polymorphism	4251813	A/C/E/G/I/K/M/O	E	33	G
2	UniProt	VAR_016323	T	86	A	UPAR_HUMAN	Polymorphism	399145	A/C/E/G/I/K/M/O	T	64	A
3	UniProt	VAR_016324	R	105	Q	UPAR_HUMAN	Polymorphism	4251878	I	R	83	Q
4	UniProt	VAR_016325	K	220	R	UPAR_HUMAN	Polymorphism	2302524	A/C/E/G/I/K/M/O	K	198	R
5	UniProt	VAR_016326	N	281	K	UPAR_HUMAN	Polymorphism	4251921	A/C/E/G/I/K/M/O	N	259	K
6	UniProt	VAR_052698	D	297	A	UPAR_HUMAN	Polymorphism	16976608	A/C/E/G/I/K/M/O	D	275	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (5, 20)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_016322	E	55	G	UPAR_HUMAN	Polymorphism	4251813	A/C/E/G	E	33	G
2	UniProt	VAR_016323	T	86	A	UPAR_HUMAN	Polymorphism	399145	A/C/E/G	T	64	A
4	UniProt	VAR_016325	K	220	R	UPAR_HUMAN	Polymorphism	2302524	A/C/E/G	K	198	R
5	UniProt	VAR_016326	N	281	K	UPAR_HUMAN	Polymorphism	4251921	A/C/E/G	N	259	K
6	UniProt	VAR_052698	D	297	A	UPAR_HUMAN	Polymorphism	16976608	A/C/E/G	D	275	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (6, 21)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_016322	E	55	G	UPAR_HUMAN	Polymorphism	4251813	I/K/M/O	E	33	G
2	UniProt	VAR_016323	T	86	A	UPAR_HUMAN	Polymorphism	399145	I/K/M/O	T	64	A
3	UniProt	VAR_016324	R	105	Q	UPAR_HUMAN	Polymorphism	4251878	I	R	83	Q
4	UniProt	VAR_016325	K	220	R	UPAR_HUMAN	Polymorphism	2302524	I/K/M/O	K	198	R
5	UniProt	VAR_016326	N	281	K	UPAR_HUMAN	Polymorphism	4251921	I/K/M/O	N	259	K
6	UniProt	VAR_052698	D	297	A	UPAR_HUMAN	Polymorphism	16976608	I/K/M/O	D	275	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_HUMAN	24-67 116-169 215-269	24	A:2-45 C:2-45 E:2-45 G:2-45 I:2-45 K:2-45 M:2-45 O:2-45 A:94-147 C:94-147 E:94-147 G:94-147 I:94-147 K:94-147 M:94-147 O:94-147 A:193-247 C:193-247 E:193-247 G:193-247 I:193-247 K:193-247 M:193-247 O:193-247

Biological Unit 1 (1, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_HUMAN	24-67 116-169 215-269	24	A:2-45 C:2-45 E:2-45 G:2-45 I:2-45 K:2-45 M:2-45 O:2-45 A:94-147 C:94-147 E:94-147 G:94-147 I:94-147 K:94-147 M:94-147 O:94-147 A:193-247 C:193-247 E:193-247 G:193-247 I:193-247 K:193-247 M:193-247 O:193-247

Biological Unit 2 (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_HUMAN	24-67 116-169 215-269	12	A:2-45 C:2-45 E:2-45 G:2-45 - - - - A:94-147 C:94-147 E:94-147 G:94-147 - - - - A:193-247 C:193-247 E:193-247 G:193-247 - - - -

Biological Unit 3 (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_HUMAN	24-67 116-169 215-269	12	- - - - I:2-45 K:2-45 M:2-45 O:2-45 - - - - I:94-147 K:94-147 M:94-147 O:94-147 - - - - I:193-247 K:193-247 M:193-247 O:193-247

Asymmetric Unit (6, 48)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000340093	1	ENSE00001048170	chr19:44174502-44174218	285	UPAR_HUMAN	1-19	19	0	-	-
1.2	ENST00000340093	2	ENSE00000847438	chr19:44171843-44171733	111	UPAR_HUMAN	19-56	38	8	A:1-34 C:1-34 E:1-34 G:1-34 I:1-34 K:1-34 M:1-34 O:1-34	34 34 34 34 34 34 34 34
1.3	ENST00000340093	3	ENSE00000494759	chr19:44169611-44169468	144	UPAR_HUMAN	56-104	49	8	A:34-82 C:34-80 E:34-79 G:34-79 I:34-82 K:34-78 M:34-81 O:34-81	49 47 46 46 49 45 48 48
1.4	ENST00000340093	4	ENSE00000710867	chr19:44160792-44160631	162	UPAR_HUMAN	104-158	55	8	A:82-131 (gaps) C:91-131 E:89-131 G:92-132 I:82-131 (gaps) K:90-130 M:88-131 O:92-131	50 41 43 41 50 41 44 40
1.5	ENST00000340093	5	ENSE00000710856	chr19:44159725-44159591	135	UPAR_HUMAN	158-203	46	8	A:137-181 C:138-181 E:139-181 G:139-181 I:137-181 K:139-181 M:140-181 O:140-181	45 44 43 43 45 43 42 42
1.6	ENST00000340093	6	ENSE00000847435	chr19:44156523-44156377	147	UPAR_HUMAN	203-252	50	8	A:181-230 C:181-230 E:181-230 G:181-230 I:181-230 K:181-230 M:181-230 O:181-230	50 50 50 50 50 50 50 50
1.7	ENST00000340093	7	ENSE00000847434	chr19:44153295-44152732	564	UPAR_HUMAN	252-335	84	8	A:230-279 C:230-275 E:230-278 G:230-276 I:230-275 K:230-276 M:230-277 O:230-276	50 46 49 47 46 47 48 47

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:268
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:279
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292         
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQ 301
               SCOP domains d1ywha2 A:1-82 Urokinase plasminogen activator surface receptor uPAR                    d1ywha1 A:89-188 Urokinase plasminogen acti     vator surface receptor uPAR                         d1ywha3 A:189-279 Urokinase plasminogen activator surface receptor uPAR                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeeee..eeeeeeeeeee......eeeeee....eeeeeeeee...........------.....eee.......hhhhhh..eee......eeeeeeeee..-----.....eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee......hhhhheeeeee....eeeeeee........eeeeeee.hhhhhhhhhhh.......eeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A---- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: A:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: A:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: A:193-247 UniProt: 215-269              -------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: A:82-131 (gaps) UniProt: 104-158        --------------------------------------------Exon 1.6  PDB: A:181-230 UniProt: 203-252         ------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: A:34-82 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: A:137-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: A:230-279 UniProt: 252-335          Transcript 1 (2)
                 1ywh A   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSG------RSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ-----RPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQ 279
                                    10        20        30        40        50        60        70        80 |      90       100       110       120       130|     |140       150       160       170       180       190       200       210       220       230       240       250       260       270         
                                                                                                            82     89                                       131   137

Chain B from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh B 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:275
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292     
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD 297
               SCOP domains d1ywhc2 C:1-80 Urokinase plasminogen activator surface receptor uPAR                      d1ywhc1 C:91-188 Urokinase plasminogen ac      tivator surface receptor uPAR                      d1ywhc3 C:189-275 Urokinase plasminogen activator surface receptor uPAR                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeee.ee..ee..eeeeeee......eeeeee....eeeeeeeee.........----------...eee...............eee......eeeeeeeee..------....eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee...........eeeeee....eeeeeeee......eeeeeeee.hhhhhhhhhhh....eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: C:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: C:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: C:193-247 UniProt: 215-269              ---------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: C:91-131 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: C:181-230 UniProt: 203-252         --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: C:34-80 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: C:138-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: C:230-275 UniProt: 252-335      Transcript 1 (2)
                 1ywh C   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN----------RYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ------PKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD 275
                                    10        20        30        40        50        60        70        80         -|      100       110       120       130|      140       150       160       170       180       190       200       210       220       230       240       250       260       270     
                                                                                                          80         91                                     131    138

Chain D from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh D 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain E from PDB  Type:PROTEIN  Length:262
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:278
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292        
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV 300
               SCOP domains d1ywhe2 E:1-79 Urokinase plasminogen activator surface receptor uPAR                    d1ywhe1 E:89-188 Urokinase plasminogen acti       vator surface receptor uPAR                       d1ywhe3 E:189-278 Urokinase plasminogen activator surface receptor uPAR                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeeee..eeeeeeeeeee......eeeeee....eeeeeeeee........---------.....eee...............eee......eeeeeeeee..-------...eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee...........eeeeee....eeeeeeeee....eeeeeeeee.hhhhhhhhhhh.......eeeee......hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A--- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: E:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: E:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: E:193-247 UniProt: 215-269              ------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: E:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: E:89-131 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: E:181-230 UniProt: 203-252         ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: E:34-79 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: E:139-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: E:230-278 UniProt: 252-335         Transcript 1 (2)
                 1ywh E   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQG---------RSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ-------KDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV 278
                                    10        20        30        40        50        60        70        |-        90       100       110       120       130|      140       150       160       170       180       190       200       210       220       230       240       250       260       270        
                                                                                                         79        89                                       131     139

Chain F from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh F 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain G from PDB  Type:PROTEIN  Length:258
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:276
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292      
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 298
               SCOP domains d1ywhg2 G:1-79 Urokinase plasminogen activator surface receptor uPAR                       d1ywhg1 G:92-188 Urokinase plasminogen ac      tivator surface receptor uPAR                     d1ywhg3 G:189-276 Urokinase plasminogen activator surface receptor uPAR                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeeee..eeeeeeeeeee......eeeeee....eeeeeeeee........------------..eee...............eee......eeeeeeeee...------...eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee...........eeeeee....eeeeeeeee....eeeeeeeee.hhhhhhhhhhh....eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: G:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: G:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: G:193-247 UniProt: 215-269              ----------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: G:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: G:92-132 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: G:181-230 UniProt: 203-252         ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: G:34-79 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: G:139-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: G:230-276 UniProt: 252-335       Transcript 1 (2)
                 1ywh G   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQG------------YLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQE------KDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 276
                                    10        20        30        40        50        60        70        |-         - |     100       110       120       130 |     140       150       160       170       180       190       200       210       220       230       240       250       260       270      
                                                                                                         79           92                                     132    139

Chain H from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh H 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain I from PDB  Type:PROTEIN  Length:264
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:275
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292     
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD 297
               SCOP domains d1ywhi2 I:1-82 Urokinase plasminogen activator surface receptor uPAR              ---      d1ywhi1 I:92-188 Urokinase plasminogen a     ctivator surface receptor uPAR                      d1ywhi3 I:189-275 Urokinase plasminogen activator surface receptor uPAR                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeee......eeeeeeeee......eeeeee....eeeeeeeee..............------..eee.......hhhhhh..eee......eeeeeeeee..-----.....eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee...........eeeeee....eeeeeeee......eeeeeeee.hhhhhhhhhhh....eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A------------------Q------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: I:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: I:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: I:193-247 UniProt: 215-269              ---------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: I:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: I:82-131 (gaps) UniProt: 104-158        --------------------------------------------Exon 1.6  PDB: I:181-230 UniProt: 203-252         --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: I:34-82 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: I:137-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: I:230-275 UniProt: 252-335      Transcript 1 (2)
                 1ywh I   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAV------YLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ-----RPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD 275
                                    10        20        30        40        50        60        70        80    |    - |     100       110       120       130|     |140       150       160       170       180       190       200       210       220       230       240       250       260       270     
                                                                                                               85     92                                    131   137

Chain J from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh J 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain K from PDB  Type:PROTEIN  Length:257
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:276
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292      
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 298
               SCOP domains d1ywhk2 K:1-78 Urokinase plasminogen activator surface receptor uPAR                     d1ywhk1 K:90-188 Urokinase plasminogen ac        tivator surface receptor uPAR                     d1ywhk3 K:189-276 Urokinase plasminogen activator surface receptor uPAR                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeee....eeeeeeeeee......eeeeee....eeeeeeeee.......-----------....eee.......hhhhhh..eee......eeeeeeeee.--------...eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeeee..........eeeeee....eeeeeee........eeeeeee.hhhhhhhhhhhhhh...eeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: K:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: K:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: K:193-247 UniProt: 215-269              ----------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: K:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: K:90-130 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: K:181-230 UniProt: 203-252         ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: K:34-78 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: K:139-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: K:230-276 UniProt: 252-335       Transcript 1 (2)
                 1ywh K   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ-----------SRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWI--------KDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 276
                                    10        20        30        40        50        60        70       | -        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      
                                                                                                        78          90                                     130      139

Chain L from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh L 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain M from PDB  Type:PROTEIN  Length:263
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:277
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLD 299
               SCOP domains d1ywhm2 M:1-81 Urokinase plasminogen activator surface receptor uPAR                   -d1ywhm1 M:89-188 Urokinase plasminogen acti        vator surface receptor uPAR                      d1ywhm3 M:189-277 Urokinase plasminogen activator surface receptor uPAR                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeee....eeeeeeeeee......eeeeee....eeeeeeeee..........------......eee...............eee......eeeeeeeee..--------..eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.....eeeeeee...........eeee......eeeeeeeee....eeeeeeeee.hhhhhhhhhhh.......eeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A-- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: M:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: M:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: M:193-247 UniProt: 215-269              ------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: M:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: M:88-131 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: M:181-230 UniProt: 203-252         ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: M:34-81 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: M:140-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: M:230-277 UniProt: 252-335        Transcript 1 (2)
                 1ywh M   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNS------SRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--------DDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLD 277
                                    10        20        30        40        50        60        70        80|      |90       100       110       120       130|      140       150       160       170       180       190       200       210       220       230       240       250       260       270       
                                                                                                           81     88                                        131      140

Chain N from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh N 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Chain O from PDB  Type:PROTEIN  Length:258
 aligned with UPAR_HUMAN | Q03405 from UniProtKB/Swiss-Prot  Length:335

    Alignment length:276
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292      
           UPAR_HUMAN    23 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 298
               SCOP domains d1ywho2 O:1-81 Urokinase plasminogen activator surface receptor uPAR                       d1ywho1 O:92-188 Urokinase plasminogen a        ctivator surface receptor uPAR                   d1ywho3 O:189-276 Urokinase plasminogen activator surface receptor uPAR                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO01 O:194-272                                                     ---- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO02 O:194-272                                                     ---- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO03 O:194-272                                                     ---- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO04 O:194-272                                                     ---- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO05 O:194-272                                                     ---- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO06 O:194-272                                                     ---- Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO07 O:194-272                                                     ---- Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO08 O:194-272                                                     ---- Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO09 O:194-272                                                     ---- Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO10 O:194-272                                                     ---- Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO11 O:194-272                                                     ---- Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO12 O:194-272                                                     ---- Pfam domains (12)
          Pfam domains (13) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO13 O:194-272                                                     ---- Pfam domains (13)
          Pfam domains (14) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO14 O:194-272                                                     ---- Pfam domains (14)
          Pfam domains (15) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO15 O:194-272                                                     ---- Pfam domains (15)
          Pfam domains (16) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO16 O:194-272                                                     ---- Pfam domains (16)
          Pfam domains (17) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO17 O:194-272                                                     ---- Pfam domains (17)
          Pfam domains (18) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO18 O:194-272                                                     ---- Pfam domains (18)
          Pfam domains (19) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO19 O:194-272                                                     ---- Pfam domains (19)
          Pfam domains (20) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO20 O:194-272                                                     ---- Pfam domains (20)
          Pfam domains (21) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO21 O:194-272                                                     ---- Pfam domains (21)
          Pfam domains (22) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO22 O:194-272                                                     ---- Pfam domains (22)
          Pfam domains (23) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO23 O:194-272                                                     ---- Pfam domains (23)
          Pfam domains (24) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UPAR_LY6-1ywhO24 O:194-272                                                     ---- Pfam domains (24)
         Sec.struct. author .eeeee.....eeeee......eeeeeeeeeee..eeeeeeeeeee......eeeeee....eeeeeeeee...hhhhh..----------..eee...............eee......eeeeeeeee..--------..eeeeeeee.....eeeeee...eeeeeeee...........hhhhh.eeeeeeeeeee...........eeeeee....eeeeeeeee....eeeeeeeee.hhhhhhhhhhh....eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------G------------------------------A-------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------K---------------A- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: O:2-45 UniProt: 24-67        ------------------------------------------------LY6_UPAR  PDB: O:94-147 UniProt: 116-169              ---------------------------------------------LY6_UPAR  PDB: O:193-247 UniProt: 215-269              ----------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: O:1-34 [INCOMPLETE]-----------------------------------------------Exon 1.4  PDB: O:92-131 UniProt: 104-158 [INCOMPLETE]  --------------------------------------------Exon 1.6  PDB: O:181-230 UniProt: 203-252         ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.3  PDB: O:34-81 UniProt: 56-104           -----------------------------------------------------Exon 1.5  PDB: O:140-181 UniProt: 158-203     ------------------------------------------------Exon 1.7  PDB: O:230-276 UniProt: 252-335       Transcript 1 (2)
                 1ywh O   1 LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNS----------YLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--------DDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDL 276
                                    10        20        30        40        50        60        70        80|        - |     100       110       120       130|      140       150       160       170       180       190       200       210       220       230       240       250       260       270      
                                                                                                           81         92                                    131      140

Chain P from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 1ywh P 501 KSDaFskYLWSSK 513
                               | ||510   
                             504-ALC     
                               506-DSN   
                                507-DLY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: Snake toxin-like (152)

Superfamily: Snake toxin-like (152)

Family: Extracellular domain of cell surface receptors (39)

Protein domain: Urokinase plasminogen activator surface receptor uPAR (5)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d1ywha1	A:89-188
1b	d1ywhc2	C:1-80
1c	d1ywhc3	C:189-275
1d	d1ywhe1	E:89-188
1e	d1ywhe2	E:1-79
1f	d1ywhe3	E:189-278
1g	d1ywhg1	G:92-188
1h	d1ywhg2	G:1-79
1i	d1ywhg3	G:189-276
1j	d1ywhi1	I:92-188
1k	d1ywhi2	I:1-82
1l	d1ywhi3	I:189-275
1m	d1ywhk1	K:90-188
1n	d1ywhk2	K:1-78
1o	d1ywhk3	K:189-276
1p	d1ywhm1	M:89-188
1q	d1ywhm2	M:1-81
1r	d1ywhm3	M:189-277
1s	d1ywho1	O:92-188
1t	d1ywho2	O:1-81
1u	d1ywho3	O:189-276
1v	d1ywha2	A:1-82
1w	d1ywha3	A:189-279
1x	d1ywhc1	C:91-188

(no "CATH Domain" information available for 1YWH)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: uPAR_Ly6_toxin (18)

Family: UPAR_LY6 (6)

Homo sapiens (Human) (5)

1a	UPAR_LY6-1ywhO01	O:194-272
1b	UPAR_LY6-1ywhO02	O:194-272
1c	UPAR_LY6-1ywhO03	O:194-272
1d	UPAR_LY6-1ywhO04	O:194-272
1e	UPAR_LY6-1ywhO05	O:194-272
1f	UPAR_LY6-1ywhO06	O:194-272
1g	UPAR_LY6-1ywhO07	O:194-272
1h	UPAR_LY6-1ywhO08	O:194-272
1i	UPAR_LY6-1ywhO09	O:194-272
1j	UPAR_LY6-1ywhO10	O:194-272
1k	UPAR_LY6-1ywhO11	O:194-272
1l	UPAR_LY6-1ywhO12	O:194-272
1m	UPAR_LY6-1ywhO13	O:194-272
1n	UPAR_LY6-1ywhO14	O:194-272
1o	UPAR_LY6-1ywhO15	O:194-272
1p	UPAR_LY6-1ywhO16	O:194-272
1q	UPAR_LY6-1ywhO17	O:194-272
1r	UPAR_LY6-1ywhO18	O:194-272
1s	UPAR_LY6-1ywhO19	O:194-272
1t	UPAR_LY6-1ywhO20	O:194-272
1u	UPAR_LY6-1ywhO21	O:194-272
1v	UPAR_LY6-1ywhO22	O:194-272
1w	UPAR_LY6-1ywhO23	O:194-272
1x	UPAR_LY6-1ywhO24	O:194-272

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G,I,K,M,O (UPAR_HUMAN | Q03405)

molecular function
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0030377	urokinase plasminogen activator receptor activity	Combining with the urokinase plasminogen activator to initiate a change in cell activity.
biological process
	GO:0016255	attachment of GPI anchor to protein	A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain.
	GO:0007596	blood coagulation	The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
	GO:0006935	chemotaxis	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
	GO:0042730	fibrinolysis	A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
	GO:0006928	movement of cell or subcellular component	The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:2001268	negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway.
	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway.
	GO:0043388	positive regulation of DNA binding	Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
	GO:0045742	positive regulation of epidermal growth factor receptor signaling pathway	Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
	GO:0001934	positive regulation of protein phosphorylation	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
	GO:0090200	positive regulation of release of cytochrome c from mitochondria	Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
	GO:0030162	regulation of proteolysis	Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0038195	urokinase plasminogen activator signaling pathway	A series of molecular signals initiated by the binding of urokinase plasminogen activator to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0031225	anchored component of membrane	The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0019898	extrinsic component of membrane	The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0071438	invadopodium membrane	The portion of the plasma membrane surrounding an invadopodium.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Cys A:153 - Pro A:154	[ RasMol ]
		Cys C:153 - Pro C:154	[ RasMol ]
		Cys E:153 - Pro E:154	[ RasMol ]
		Cys G:153 - Pro G:154	[ RasMol ]
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		Glu E:230 - Pro E:231	[ RasMol ]
		Glu G:230 - Pro G:231	[ RasMol ]
		Glu I:230 - Pro I:231	[ RasMol ]
		Glu K:230 - Pro K:231	[ RasMol ]
		Glu M:230 - Pro M:231	[ RasMol ]
		Glu O:230 - Pro O:231	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
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Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	1ywh
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	UPAR_HUMAN \| Q03405	:	2fd6 2i9b 3bt1 3bt2 3u73 3u74 4k24 4qti

(no "Related Entries Specified in the PDB File" available for 1YWH)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 108)

Sites (84, 84)

SS Bonds (112, 112)

Cis Peptide Bonds (15, 15)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (6, 41)

PROSITE Motifs (1, 24)

Exons (6, 48)

Sequences/Alignments

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SCOP Domains (1, 24)

CATH Domains (0, 0)

Pfam Domains (1, 24)

Gene Ontology (35, 35)

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Related Entries Specified in the PDB File