1YW7 - JenaLib

Title :   H-METAP2 COMPLEXED WITH A444148

Authors :   C. H. Park

Date :   17 Feb 05 (Deposition) - 21 Feb 06 (Release) - 12 May 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. S. Sheppard, J. Wang, M. Kawai, S. D. Fidanze, N. Y. Bamaung, S. A. Erickson, D. M. Barnes, J. S. Tedrow, L. Kolaczkowski, A. Vasudevan, D. C. Park, G. T. Wang, W. J. Sanders, R. A. Mantei, F. Palazzo, L. Tucker-Garcia, P. Lou, Q. Zhang, C. H. Park, K. H. Kim, A. Petros, E. Olejniczak, D. Nettesheim, P. Hajduk, J. Henkin, R. Lesniewski, S. K. Davidsen, R. L. Bell
Discovery And Optimization Of Anthranilic Acid Sulfonamides As Inhibitors Of Methionine Aminopeptidase-2: A Structural Basis For The Reduction Of Albumin Binding.
J. Med. Chem. V. 49 3832 2006
PubMed-ID: 16789740 | Reference-DOI: 10.1021/JM0601001
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (3, 3)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (8, 8)

Asymmetric/Biological Unit (8, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000323666	1	ENSE00001323969	chr12:95867822-95868106	285	MAP2_HUMAN	1-51	51	0	-	-
1.2a	ENST00000323666	2a	ENSE00000753403	chr12:95869847-95869954	108	MAP2_HUMAN	51-87	37	0	-	-
1.3	ENST00000323666	3	ENSE00000753404	chr12:95876991-95877056	66	MAP2_HUMAN	87-109	23	0	-	-
1.4	ENST00000323666	4	ENSE00000753405	chr12:95879655-95879757	103	MAP2_HUMAN	109-143	35	1	A:110-143	34
1.5	ENST00000323666	5	ENSE00000753406	chr12:95887832-95887993	162	MAP2_HUMAN	143-197	55	1	A:143-197	55
1.6	ENST00000323666	6	ENSE00000753407	chr12:95888733-95888914	182	MAP2_HUMAN	197-258	62	1	A:197-258	62
1.7	ENST00000323666	7	ENSE00000753408	chr12:95889780-95889874	95	MAP2_HUMAN	258-289	32	1	A:258-289	32
1.8	ENST00000323666	8	ENSE00000922696	chr12:95897841-95897937	97	MAP2_HUMAN	290-322	33	1	A:290-322	33
1.9	ENST00000323666	9	ENSE00000922697	chr12:95905671-95905774	104	MAP2_HUMAN	322-356	35	1	A:322-356	35
1.10	ENST00000323666	10	ENSE00000922698	chr12:95906577-95906692	116	MAP2_HUMAN	357-395	39	1	A:357-395	39
1.11	ENST00000323666	11	ENSE00001295819	chr12:95907428-95909615	2188	MAP2_HUMAN	395-478	84	1	A:395-478	84

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:369
 aligned with MAP2_HUMAN | P50579 from UniProtKB/Swiss-Prot  Length:478

    Alignment length:369
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469         
           MAP2_HUMAN   110 KVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 478
               SCOP domains d1yw7a2 A:110-374,A:449-478 Methionine aminopeptidase                                                                                                                                                                                                                    d1yw7a1 A:375-448 Methionine aminopeptidase, insert domain                d1yw7a2 A:110-374,A:449-478    SCOP domains
               CATH domains ------------------------------------------------------1yw7A01 A:164-371,A:451-474 Creatinase/methionine aminopeptidase superfamily                                                                                                                                    1yw7A02 A:372-450 'winged helix' repressor DNA binding domain                  1yw7A01                 ---- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh........eee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeeeeeeeee..eee.................eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeee..eeee.ee.....eee..........ee...............eeeeeeeee......ee.....eeee..........hhhhhhhhhhhhhhh....eehhhhhh.....hhhhhhhhhhh..eeee..ee......eeeeeeeeee....eee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------MAP_2            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.4  PDB: A:110-143          -----------------------------------------------------Exon 1.6  PDB: A:197-258 UniProt: 197-258                     -------------------------------Exon 1.8  PDB: A:290-322         ----------------------------------Exon 1.10  PDB: A:357-395              ----------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.5  PDB: A:143-197 UniProt: 143-197              ------------------------------------------------------------Exon 1.7  PDB: A:258-289        --------------------------------Exon 1.9  PDB: A:322-356           --------------------------------------Exon 1.11  PDB: A:395-478 UniProt: 395-478                                           Transcript 1 (2)
                 1yw7 A 110 KVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 478
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (MAP2_HUMAN | P50579)

molecular function
	GO:0004177	aminopeptidase activity	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0070006	metalloaminopeptidase activity	Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008235	metalloexopeptidase activity	Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
	GO:0031365	N-terminal protein amino acid modification	The alteration of the N-terminal amino acid residue in a protein.
	GO:0018206	peptidyl-methionine modification	The modification of peptidyl-methionine.
	GO:0070084	protein initiator methionine removal	The protein modification process in which the translation-initiating methionine or formylmethionine residue is removed from a protein.
	GO:0016485	protein processing	Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0022400	regulation of rhodopsin mediated signaling pathway	Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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