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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACILLIS SUBTILIS ACETYLTRANSFERASE IN COMPLEX WITH COA, NORTHEAST STRUCTURAL GENOMICS TARGET SR237.
 
Authors :  F. Forouhar, W. Yong, R. Xiao, M. Ciano, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  15 Feb 05  (Deposition) - 22 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.01
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Alphs-Beta Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, W. Yong, R. Xiao, M. Ciano, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Bacillis Subtilis Acetyltransferase In Complex With Coa, Northeast Structural Genomics Target Sr237.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN BSU33890
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BL21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Gene: YVBK
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
    Strain: SUBSP. SUBTILIS STR. 168

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1COA4Ligand/IonCOENZYME A
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:25 , ILE A:69 , ALA A:70 , VAL A:71 , GLN A:76 , LYS A:77 , GLY A:79 , GLY A:81 , LYS A:82 , HIS A:110 , GLN A:111 , SER A:113 , LEU A:114 , TYR A:115 , LYS A:117 , COA B:202BINDING SITE FOR RESIDUE COA A 201
2AC2SOFTWARELYS A:117 , COA A:201 , ALA B:25 , ILE B:69 , ALA B:70 , VAL B:71 , GLN B:76 , LYS B:77 , LYS B:78 , GLY B:79 , PHE B:80 , GLY B:81 , LYS B:82 , HIS B:110 , GLN B:111 , SER B:113 , LEU B:114 , LYS B:117BINDING SITE FOR RESIDUE COA B 202
3AC3SOFTWAREALA C:25 , ILE C:69 , ALA C:70 , VAL C:71 , GLN C:76 , LYS C:77 , LYS C:78 , GLY C:79 , GLY C:81 , LYS C:82 , HIS C:110 , GLN C:111 , LEU C:114 , TYR C:115 , LYS C:117 , COA D:204BINDING SITE FOR RESIDUE COA C 203
4AC4SOFTWARECOA C:203 , ALA D:25 , ILE D:69 , ALA D:70 , VAL D:71 , GLN D:76 , LYS D:77 , GLY D:79 , PHE D:80 , GLY D:81 , LYS D:82 , HIS D:110 , GLN D:111 , LEU D:114 , LYS D:117BINDING SITE FOR RESIDUE COA D 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YVK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YVK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YVK)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GNATPS51186 Gcn5-related N-acetyltransferase (GNAT) domain profile.YVBK_BACSU6-155
 
 
 		  4A:6-155
B:6-155
C:6-155
D:6-155

(-) Exons   (0, 0)

(no "Exon" information available for 1YVK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with YVBK_BACSU | O32248 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:152
                                                                                                                                                                                155 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154| 
           YVBK_BACSU     5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLDL-   -
               SCOP domains d1yvka1 A:5-156 Hypothetical protein YvbK (BSu33890)                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhh.hhhhhhhhhhhheeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee.hhhhhh....eee..eee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: A:6-155 UniProt: 6-155                                                                                                                     - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yvk A   5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDmVRLYLDLL 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   |   154  
                                                                                                                                                                         148-MSE    


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with YVBK_BACSU | O32248 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:152
                                                                                                                                                                                155 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154| 
           YVBK_BACSU     5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLDL-   -
               SCOP domains d1yvkb_ B: Hypothetical protein YvbK (BSu33890)                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhh.hhhhhhhhhhhheeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee.hhhhhhh...eee..eee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: B:6-155 UniProt: 6-155                                                                                                                     - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yvk B   5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDmVRLYLDLL 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   |   154  
                                                                                                                                                                         148-MSE    


Chain C from PDB  Type:PROTEIN  Length:152
 aligned with YVBK_BACSU | O32248 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:152
                                                                                                                                                                                155 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154| 
           YVBK_BACSU     5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLDL-   -
               SCOP domains d1yvkc_ C: Hypothetical protein YvbK (BSu33890)                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhh.hhhhhhhhhhhheeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee.hhhhhhh...eee..eee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: C:6-155 UniProt: 6-155                                                                                                                     - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yvk C   5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDmVRLYLDLL 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   |   154  
                                                                                                                                                                         148-MSE    


Chain D from PDB  Type:PROTEIN  Length:152
 aligned with YVBK_BACSU | O32248 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:152
                                                                                                                                                                                155 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154| 
           YVBK_BACSU     5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLDL-   -
               SCOP domains d1yvkd_ D: Hypothetical protein YvbK (BSu33890)                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------Acetyltransf_1-1yvkD01 D:44-121                                               ----------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------Acetyltransf_1-1yvkD02 D:44-121                                               ----------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------Acetyltransf_1-1yvkD03 D:44-121                                               ----------------------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------Acetyltransf_1-1yvkD04 D:44-121                                               ----------------------------------- Pfam domains (4)
         Sec.struct. author ..eeee....hhhhhhhhhhhh.hhhhhhhhhhhheeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee.hhhhhhh...eee..eee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: D:6-155 UniProt: 6-155                                                                                                                     - PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yvk D   5 KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDmVRLYLDLL 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144   |   154  
                                                                                                                                                                         148-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YVK)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: Acetyltrans (109)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (YVBK_BACSU | O32248)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0004596    peptide alpha-N-acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide. This reaction is the acetylation of the N-terminal amino acid residue of a peptide or protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006474    N-terminal protein amino acid acetylation    The acetylation of the N-terminal amino acid of proteins.
cellular component
    GO:0031248    protein acetyltransferase complex    A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule.

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