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(-) Description

Title :  BETA-D-XYLOSIDASE (SELENOMETHIONINE) XYND FROM CLOSTRIDIUM ACETOBUTYLICUM
 
Authors :  A. Teplyakov, E. Fedorov, G. L. Gilliland, S. C. Almo, S. K. Burley, New Research Center For Structural Genomics (Nysgxrc)
Date :  11 Jan 05  (Deposition) - 22 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta-Propeller, Beta-Sandwich, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Teplyakov, E. Fedorov, G. L. Gilliland, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of Beta-Xylosidase From Clostridium Acetobutylicum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-XYLOSIDASE, FAMILY 43 GLYCOSYL HYDROLASE
    ChainsA, B, C, D
    EC Number3.2.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET100-D-TOPO
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneCAC3452 (XYND)
    Organism ScientificCLOSTRIDIUM ACETOBUTYLICUM
    Organism Taxid272562
    StrainATCC 824

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 51)

Asymmetric/Biological Unit (5, 51)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3GOL20Ligand/IonGLYCEROL
4MSE16Mod. Amino AcidSELENOMETHIONINE
5SO47Ligand/IonSULFATE ION

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:333 , GLY A:362 , ASP A:528 , HOH A:3171 , HOH A:3235BINDING SITE FOR RESIDUE CA A 3001
02AC2SOFTWAREASN B:333 , GLY B:362 , ASP B:528 , HOH B:3162 , HOH B:3358BINDING SITE FOR RESIDUE CA B 3002
03AC3SOFTWAREASN C:333 , GLY C:362 , ASP C:528 , HOH C:3133 , HOH C:3201BINDING SITE FOR RESIDUE CA C 3003
04AC4SOFTWAREASN D:333 , GLY D:362 , ASP D:528 , HOH D:3218 , HOH D:3273BINDING SITE FOR RESIDUE CA D 3004
05AC5SOFTWARELYS A:326 , THR A:327 , TYR A:328 , HOH A:3206 , HOH A:3281 , HOH A:3326 , HOH A:3389 , HOH A:3460BINDING SITE FOR RESIDUE SO4 A 3005
06AC6SOFTWARELYS B:326 , THR B:327 , TYR B:328 , HOH B:3236 , HOH B:3265 , HOH B:3356 , HOH B:3384BINDING SITE FOR RESIDUE SO4 B 3006
07AC7SOFTWARELYS C:326 , THR C:327 , TYR C:328 , HOH C:3213 , HOH C:3270 , HOH C:3298 , HOH C:3301 , HOH C:3325BINDING SITE FOR RESIDUE SO4 C 3007
08AC8SOFTWARELYS D:326 , THR D:327 , TYR D:328 , HOH D:3153 , HOH D:3189 , HOH D:3230 , HOH D:3349BINDING SITE FOR RESIDUE SO4 D 3008
09AC9SOFTWARESER B:311 , VAL B:312 , ASN B:313 , HOH B:3323 , HOH B:3548BINDING SITE FOR RESIDUE SO4 B 3009
10BC1SOFTWARESER D:311 , VAL D:312 , ASN D:313BINDING SITE FOR RESIDUE SO4 D 3010
11BC2SOFTWARESER A:2 , LEU A:3 , LYS A:5 , HOH A:3513 , LYS B:44BINDING SITE FOR RESIDUE SO4 A 3011
12BC3SOFTWAREASP A:401 , HOH A:3192 , HOH A:3259 , HOH A:3315 , HOH A:3500 , TYR B:156 , LYS B:173 , ALA B:174 , HOH B:3081BINDING SITE FOR RESIDUE EPE A 3012
13BC4SOFTWARETYR A:156 , LYS A:173 , ALA A:174 , HOH A:3034 , HOH A:3179 , HOH A:3448 , HOH A:3538 , HOH A:3542 , ASP B:401 , THR B:402BINDING SITE FOR RESIDUE EPE A 3013
14BC5SOFTWAREASP C:401 , HOH C:3165 , TYR D:156 , LYS D:173 , ALA D:174 , HOH D:3106 , HOH D:3447 , HOH D:3538 , HOH D:3664BINDING SITE FOR RESIDUE EPE D 3014
15BC6SOFTWARELYS C:173 , ALA C:174 , HOH C:3088 , HOH C:3215 , HOH C:3413 , ASP D:401BINDING SITE FOR RESIDUE EPE C 3015
16BC7SOFTWARESER A:60 , LEU A:61 , LEU A:62 , ASP A:63 , ASP A:91 , TYR A:105 , PRO A:119 , HOH A:3193 , HOH A:3217 , HOH A:3241BINDING SITE FOR RESIDUE GOL A 3016
17BC8SOFTWARESER B:60 , LEU B:61 , LEU B:62 , ASP B:63 , ASP B:91 , PRO B:119 , HOH B:3088 , HOH B:3187 , HOH B:3342BINDING SITE FOR RESIDUE GOL B 3017
18BC9SOFTWARESER C:60 , LEU C:61 , LEU C:62 , ASP C:63 , ASP C:91 , TYR C:105 , PRO C:119 , HOH C:3050 , HOH C:3290 , HOH C:3302 , HOH C:3395BINDING SITE FOR RESIDUE GOL C 3018
19CC1SOFTWARESER D:60 , LEU D:61 , LEU D:62 , ASP D:63 , ASP D:91 , TYR D:105 , PRO D:119 , HOH D:3110 , HOH D:3208 , HOH D:3284BINDING SITE FOR RESIDUE GOL D 3019
20CC2SOFTWAREASP A:15 , PHE A:32 , TRP A:74 , ALA A:75 , ASP A:128 , ARG A:288 , GOL A:3024 , HOH A:3060BINDING SITE FOR RESIDUE GOL A 3020
21CC3SOFTWAREASP B:15 , PHE B:32 , TRP B:74 , ALA B:75 , ASP B:128 , ARG B:288 , GOL B:3025 , HOH B:3102BINDING SITE FOR RESIDUE GOL B 3021
22CC4SOFTWAREASP C:15 , PHE C:32 , TRP C:74 , ALA C:75 , ASP C:128 , ARG C:288 , GOL C:3026 , HOH C:3054BINDING SITE FOR RESIDUE GOL C 3022
23CC5SOFTWAREASP D:15 , PHE D:32 , TRP D:74 , ALA D:75 , ASP D:128 , ARG D:288 , GOL D:3027 , HOH D:3083BINDING SITE FOR RESIDUE GOL D 3023
24CC6SOFTWAREGLU A:187 , GLY A:206 , THR A:207 , GOL A:3020 , HOH A:3366BINDING SITE FOR RESIDUE GOL A 3024
25CC7SOFTWAREGLU B:187 , THR B:207 , PHE B:506 , GOL B:3021 , HOH B:3223 , HOH B:3367BINDING SITE FOR RESIDUE GOL B 3025
26CC8SOFTWAREGLU C:187 , GLY C:206 , THR C:207 , PHE C:506 , GOL C:3022 , HOH C:3267BINDING SITE FOR RESIDUE GOL C 3026
27CC9SOFTWAREGLU D:187 , GLY D:206 , THR D:207 , GOL D:3023 , HOH D:3261BINDING SITE FOR RESIDUE GOL D 3027
28DC1SOFTWAREPRO A:240 , ARG A:241 , HOH A:3272 , HOH A:3390 , HOH A:3394 , ILE C:183BINDING SITE FOR RESIDUE GOL A 3028
29DC2SOFTWAREPRO B:240 , ARG B:241 , HOH B:3222 , PRO D:232 , HOH D:3307 , HOH D:3435BINDING SITE FOR RESIDUE GOL B 3029
30DC3SOFTWAREILE A:183 , THR A:235 , PRO C:240 , ARG C:241 , HOH C:3241 , HOH C:3269 , HOH C:3416BINDING SITE FOR RESIDUE GOL C 3030
31DC4SOFTWAREILE B:183 , TRP B:237 , HOH B:3347 , PRO D:240 , ARG D:241 , HOH D:3248 , HOH D:3334 , HOH D:3629BINDING SITE FOR RESIDUE GOL D 3031
32DC5SOFTWAREGLN A:280 , ARG A:281 , GLY A:282 , TYR A:283 , HOH A:3345 , HOH A:3453BINDING SITE FOR RESIDUE GOL A 3032
33DC6SOFTWAREGLN B:280 , ARG B:281 , GLY B:282 , TYR B:283 , HOH B:3233BINDING SITE FOR RESIDUE GOL B 3033
34DC7SOFTWAREGLN C:280 , ARG C:281 , GLY C:282 , TYR C:283 , HOH C:3324BINDING SITE FOR RESIDUE GOL C 3034
35DC8SOFTWAREGLN D:280 , ARG D:281 , GLY D:282 , TYR D:283 , HOH D:3297BINDING SITE FOR RESIDUE GOL D 3035

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YI7)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Asn A:6 -Pro A:7
2Phe A:35 -Pro A:36
3Gly A:223 -Pro A:224
4Tyr A:231 -Pro A:232
5Asn B:6 -Pro B:7
6Phe B:35 -Pro B:36
7Gly B:223 -Pro B:224
8Tyr B:231 -Pro B:232
9Asn C:6 -Pro C:7
10Phe C:35 -Pro C:36
11Gly C:223 -Pro C:224
12Tyr C:231 -Pro C:232
13Asn D:6 -Pro D:7
14Phe D:35 -Pro D:36
15Gly D:223 -Pro D:224
16Tyr D:231 -Pro D:232

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YI7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YI7)

(-) Exons   (0, 0)

(no "Exon" information available for 1YI7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1yi7a2 A:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1yi7a1 A:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1yi7A01 A:2-326 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 1yi7A02 A:327-535  [code=2.60.120.200, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yi7 A   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDmKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGmWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNmYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDmPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61  |     71        81        91      |101       111       121       131       141  |    151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451       461       471       481       491       501       511       521       531    
                                                                                         64-MSE                            98-MSE                                       144-MSE                                                                                                                                                                                                                                                                                                      445-MSE                                                                                      

Chain B from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1yi7b2 B:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1yi7b1 B:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1yi7B01 B:2-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                  1yi7B02 B:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee....................eeeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yi7 B   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDmKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGmWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNmYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDmPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61  |     71        81        91      |101       111       121       131       141  |    151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451       461       471       481       491       501       511       521       531    
                                                                                         64-MSE                            98-MSE                                       144-MSE                                                                                                                                                                                                                                                                                                      445-MSE                                                                                      

Chain C from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1yi7c2 C:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1yi7c1 C:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1yi7C01 C:2-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                  1yi7C02 C:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....ee....eeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee.................eeeeeeeeee.....eeeeeeee....................eeeeeeeeeee..eeee........ee................ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yi7 C   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDmKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGmWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNmYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDmPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61  |     71        81        91      |101       111       121       131       141  |    151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451       461       471       481       491       501       511       521       531    
                                                                                         64-MSE                            98-MSE                                       144-MSE                                                                                                                                                                                                                                                                                                      445-MSE                                                                                      

Chain D from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1yi7d2 D:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1yi7d1 D:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1yi7D01 D:2-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                  1yi7D02 D:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
           Pfam domains (1) --Glyco_hydro_43-1yi7D01 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --Glyco_hydro_43-1yi7D02 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --Glyco_hydro_43-1yi7D03 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --Glyco_hydro_43-1yi7D04 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee....................eeeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yi7 D   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDmKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGmWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNmYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDmPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61  |     71        81        91      |101       111       121       131       141  |    151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451       461       471       481       491       501       511       521       531    
                                                                                         64-MSE                            98-MSE                                       144-MSE                                                                                                                                                                                                                                                                                                      445-MSE                                                                                      

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 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q97DM1_CLOAB | Q97DM1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q97DM1_CLOAB | Q97DM11y7b

(-) Related Entries Specified in the PDB File

1y7b BETA-D-XYLOSIDASE (WILD TYPE) RELATED ID: NYSGXRC-T1998 RELATED DB: TARGETDB