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(-) Description

Title :  BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE
 
Authors :  A. Teplyakov, E. Fedorov, G. L. Gilliland, S. C. Almo, S. K. Burley, New Research Center For Structural Genomics (Nysgxrc)
Date :  08 Dec 04  (Deposition) - 25 Jan 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta-Propeller, Beta-Sandwich, Structural Genomics, Protein Structure Initative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Protein Structure Initiative, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Teplyakov, E. Fedorov, G. L. Gilliland, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of Beta-Xylosidase From Clostridium Acetobutylicum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-XYLOSIDASE, FAMILY 43 GLYCOSYL HYDROLASE
    Chains: A, B, C, D
    EC Number: 3.2.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET100-D-TOPO
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: XYND
    Organism Scientific: CLOSTRIDIUM ACETOBUTYLICUM
    Organism Taxid: 272562
    Strain: ATCC 824

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 29)

Asymmetric/Biological Unit (5, 29)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3GOL14Ligand/IonGLYCEROL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
5SO46Ligand/IonSULFATE ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:333 , GLY A:362 , ASP A:528 , HOH A:3212 , HOH A:3234BINDING SITE FOR RESIDUE CA A 3001
02AC2SOFTWAREASN B:333 , GLY B:362 , ASP B:528 , HOH B:3165 , HOH B:3213BINDING SITE FOR RESIDUE CA B 3002
03AC3SOFTWAREASN C:333 , GLY C:362 , ASP C:528 , HOH C:3234 , HOH C:3258BINDING SITE FOR RESIDUE CA C 3003
04AC4SOFTWAREASN D:333 , GLY D:362 , ASP D:528 , HOH D:3213 , HOH D:3263BINDING SITE FOR RESIDUE CA D 3004
05AC5SOFTWARESER D:311 , VAL D:312 , ASN D:313 , HOH D:3320 , HOH D:3562 , HOH D:3756BINDING SITE FOR RESIDUE SO4 D 3024
06AC6SOFTWARESER B:311 , VAL B:312 , ASN B:313 , HOH B:3256 , HOH B:3519 , HOH B:3547 , HOH B:3649 , HOH B:3664BINDING SITE FOR RESIDUE SO4 B 3025
07AC7SOFTWARELYS B:326 , THR B:327 , TYR B:328 , HOH B:3204 , HOH B:3217 , HOH B:3278 , HOH B:3302 , HOH B:3342 , HOH B:3446 , HOH B:3730BINDING SITE FOR RESIDUE SO4 B 3026
08AC8SOFTWARELYS A:326 , THR A:327 , HOH A:3205 , HOH A:3249 , HOH A:3277 , HOH A:3287 , HOH A:3335BINDING SITE FOR RESIDUE SO4 A 3027
09AC9SOFTWARELYS D:326 , THR D:327 , HOH D:3274 , HOH D:3275 , HOH D:3291 , HOH D:3354 , HOH D:3412BINDING SITE FOR RESIDUE SO4 D 3028
10BC1SOFTWAREARG A:58 , THR A:59 , SER A:60 , HOH A:3145 , HOH A:3610 , HOH A:3717BINDING SITE FOR RESIDUE SO4 A 3029
11BC2SOFTWAREASP A:401 , TYR B:156 , LYS B:173 , ALA B:174 , HOH B:3118 , HOH B:3338 , HOH B:3378 , HOH B:3410 , HOH B:3493BINDING SITE FOR RESIDUE EPE B 3005
12BC3SOFTWARETYR A:156 , LYS A:173 , ALA A:174 , HOH A:3132 , HOH A:3346 , HOH A:3512 , HOH A:3551 , HOH A:3615 , ASP B:401 , TRP B:425 , HOH B:3138BINDING SITE FOR RESIDUE EPE A 3006
13BC4SOFTWAREASP C:401 , HOH C:3151 , HOH C:3237 , TYR D:156 , LYS D:173 , ALA D:174 , HOH D:3129 , HOH D:3382 , HOH D:3555 , HOH D:3599 , HOH D:3758BINDING SITE FOR RESIDUE EPE D 3007
14BC5SOFTWARETYR C:156 , LYS C:173 , ALA C:174 , HOH C:3079 , HOH C:3276 , HOH C:3501 , ASP D:401 , TRP D:425BINDING SITE FOR RESIDUE EPE C 3008
15BC6SOFTWAREILE A:194 , GLY A:195 , ASP A:196 , TYR A:199 , TRP A:297 , ASN A:300 , HOH A:3401 , HOH A:3474 , HOH A:3606BINDING SITE FOR RESIDUE PGE A 3023
16BC7SOFTWARESER B:60 , LEU B:61 , LEU B:62 , ASP B:63 , ASP B:91 , TYR B:105 , PRO B:119 , HOH B:3106 , HOH B:3140 , HOH B:3314 , HOH B:3604BINDING SITE FOR RESIDUE GOL B 3009
17BC8SOFTWAREASP B:15 , PHE B:32 , TRP B:74 , ALA B:75 , ASP B:128 , ARG B:288 , GOL B:3018 , HOH B:3065BINDING SITE FOR RESIDUE GOL B 3010
18BC9SOFTWAREASP A:15 , PHE A:32 , TRP A:74 , ALA A:75 , ASP A:128 , ARG A:288 , GOL A:3017 , HOH A:3035BINDING SITE FOR RESIDUE GOL A 3011
19CC1SOFTWARESER A:60 , LEU A:61 , LEU A:62 , ASP A:63 , ASP A:91 , PRO A:119 , HOH A:3082 , HOH A:3186 , HOH A:3470 , HOH A:3488BINDING SITE FOR RESIDUE GOL A 3012
20CC2SOFTWARESER C:60 , LEU C:61 , ASP C:63 , ASP C:91 , TYR C:105 , PRO C:119 , HOH C:3088 , HOH C:3126 , HOH C:3243BINDING SITE FOR RESIDUE GOL C 3013
21CC3SOFTWAREASP C:15 , PHE C:32 , TRP C:74 , ALA C:75 , ASP C:128 , ARG C:288 , HOH C:3030 , HOH C:3583BINDING SITE FOR RESIDUE GOL C 3014
22CC4SOFTWAREASP D:15 , PHE D:32 , TRP D:74 , ALA D:75 , ASP D:128 , ARG D:288 , GOL D:3019 , HOH D:3081BINDING SITE FOR RESIDUE GOL D 3015
23CC5SOFTWARESER D:60 , LEU D:61 , LEU D:62 , ASP D:63 , ASP D:91 , TYR D:105 , PRO D:119 , HOH D:3093 , HOH D:3170 , HOH D:3234 , HOH D:3331BINDING SITE FOR RESIDUE GOL D 3016
24CC6SOFTWAREPHE A:155 , TYR A:185 , GLU A:187 , GLY A:206 , THR A:207 , GOL A:3011 , HOH A:3310BINDING SITE FOR RESIDUE GOL A 3017
25CC7SOFTWAREGLU B:187 , GLY B:206 , THR B:207 , GOL B:3010 , HOH B:3230BINDING SITE FOR RESIDUE GOL B 3018
26CC8SOFTWAREGLU D:187 , GLY D:206 , THR D:207 , GOL D:3015 , HOH D:3294 , HOH D:3418BINDING SITE FOR RESIDUE GOL D 3019
27CC9SOFTWAREILE C:194 , TYR C:199 , ASN C:300BINDING SITE FOR RESIDUE GOL C 3020
28DC1SOFTWAREPRO B:240 , ARG B:241 , HOH B:3316 , HOH B:3393 , HOH B:3663 , ILE D:183 , PRO D:232 , HOH D:3287BINDING SITE FOR RESIDUE GOL B 3021
29DC2SOFTWAREPRO A:240 , ARG A:241 , HOH A:3293 , HOH A:3316 , HOH A:3477 , HOH A:3822 , PRO C:232 , HOH C:3351BINDING SITE FOR RESIDUE GOL A 3022

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y7B)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Asn A:6 -Pro A:7
2Phe A:35 -Pro A:36
3Gly A:223 -Pro A:224
4Tyr A:231 -Pro A:232
5Asn B:6 -Pro B:7
6Phe B:35 -Pro B:36
7Gly B:223 -Pro B:224
8Tyr B:231 -Pro B:232
9Asn C:6 -Pro C:7
10Phe C:35 -Pro C:36
11Gly C:223 -Pro C:224
12Tyr C:231 -Pro C:232
13Asn D:6 -Pro D:7
14Phe D:35 -Pro D:36
15Gly D:223 -Pro D:224
16Tyr D:231 -Pro D:232

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y7B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y7B)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y7B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains --d1y7ba2 A:4-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                              d1y7ba1 A:325-534 Beta-D-xylosidase C-terminal domain                                                                                                                                                             - SCOP domains
               CATH domains 1y7bA01 A:2-326 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 1y7bA02 A:327-535  [code=2.60.120.200, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y7b A   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531    


Chain B from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1y7bb2 B:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1y7bb1 B:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1y7bB01 B:2-326 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 1y7bB02 B:327-535  [code=2.60.120.200, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee.................eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y7b B   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531    


Chain C from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1y7bc2 C:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1y7bc1 C:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1y7bC01 C:2-326 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 1y7bC02 C:327-535  [code=2.60.120.200, no name defined]                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y7b C   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531    


Chain D from PDB  Type:PROTEIN  Length:534
 aligned with Q97DM1_CLOAB | Q97DM1 from UniProtKB/TrEMBL  Length:533

    Alignment length:534
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529    
         Q97DM1_CLOAB     - -MIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533
               SCOP domains d1y7bd2 D:2-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                                d1y7bd1 D:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1y7bD01 D:2-326 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 1y7bD02 D:327-535  [code=2.60.120.200, no name defined]                                                                                                                                                           CATH domains
           Pfam domains (1) --Glyco_hydro_43-1y7bD01 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --Glyco_hydro_43-1y7bD02 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --Glyco_hydro_43-1y7bD03 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --Glyco_hydro_43-1y7bD04 D:4-302                                                                                                                                                                                                                                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eee...........eeeee..eeeeee....ee...eeeee......eeee..................ee...eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........eee...............ee...........eee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......eeeeeeee.hhhh.............eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y7b D   2 SLIKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGSGFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVEAPKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTENWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSYSFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCIDITGNNKPADFDYFCYKEE 535
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531
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 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: B_Fructosidase (34)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q97DM1_CLOAB | Q97DM1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  1y7b
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  Q97DM1_CLOAB | Q97DM1
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  3.2.1.37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q97DM1_CLOAB | Q97DM1: 1yi7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1Y7B)