1YEY - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF L-FUCONATE DEHYDRATASE FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS STR. ATCC 33913

Authors :   A. A. Fedorov, E. V. Fedorov, W. S. Yew, J. A. Gerlt, S. C. Almo, S. K. Burle York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   28 Dec 04 (Deposition) - 11 Jan 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.34

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: C,D  (1x)
Biol. Unit 6: A,B  (1x)

Keywords :   Structural Genomics, L-Fuconate Dehydratase, Enolase Superfamily, Nysgxrc Target T2188, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. A. Fedorov, E. V. Fedorov, W. S. Yew, J. A. Gerlt, S. C. Almo
Crystal Structure Of L-Fuconate Dehydratase From Xanthomona Campestris Pv. Campestris Str. Atcc 33913
To Be Published
PubMed: search

Molecule 1 - L-FUCONATE DEHYDRATASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS
	Organism Taxid	:	340
	Strain	:	ATCC 33913

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:			C	D
Biological Unit 6 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 40)

No.	Name	Count	Type	Full Name
1	MG	4	Ligand/Ion	MAGNESIUM ION
2	MSE	36	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 9)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 18)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 18)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:248 , ASN A:250 , GLU A:274 , GLU A:301 , HOH A:5231 , HOH A:5232	BINDING SITE FOR RESIDUE MG A 6001
2	AC2	SOFTWARE	LYS B:220 , ASP B:248 , GLU B:274 , GLU B:301 , HOH B:5233 , HOH B:5234	BINDING SITE FOR RESIDUE MG B 6002
3	AC3	SOFTWARE	LYS C:220 , ASP C:248 , GLU C:274 , GLU C:301 , HOH C:5235 , HOH C:5236	BINDING SITE FOR RESIDUE MG C 6003
4	AC4	SOFTWARE	LYS D:220 , ASP D:248 , ASN D:250 , GLU D:274 , GLU D:301 , HOH D:5237 , HOH D:5238	BINDING SITE FOR RESIDUE MG D 6004

(no "SS Bond" information available for 1YEY)

Asymmetric Unit

No.	Residues
1	Gly A:103	-	Pro A:104
2	Thr A:293	-	Pro A:294
3	Tyr A:424	-	Pro A:425
4	Gly B:103	-	Pro B:104
5	Thr B:293	-	Pro B:294
6	Tyr B:424	-	Pro B:425
7	Gly C:103	-	Pro C:104
8	Thr C:293	-	Pro C:294
9	Tyr C:424	-	Pro C:425
10	Gly D:103	-	Pro D:104
11	Thr D:293	-	Pro D:294
12	Tyr D:424	-	Pro D:425

(no "SAP(SNP)/Variant" information available for 1YEY)

(no "PROSITE Motif" information available for 1YEY)

(no "Exon" information available for 1YEY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:425
 aligned with FUCD_XANCP | Q8P3K2 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430     
           FUCD_XANCP     1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYPDGRFWVEDLA 435
               SCOP domains -d1yeya2 A:2-140 RT      S beta protein                                                                                                     -------------------------------------------d1yeya1 A:1    84-435 RTS beta protein                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------      ----------------------------------------------------------------------------------------------------------1yeyA02 A:132-435 Enolase superfamily                                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhh------.......eeeeeeeee......eeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhheeeee.....----hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh....ee......hhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.ee.......hhhhhhhhhhhhhhhhh........eee...hhhhh.........ee............hhhhhhhhh...hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yey A   1 mRTIIALETHDVRFPTSRE------mNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVmHmAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGW----DEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAmAVDANQRWDVGPAIDWmRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAmADFVAITGKmEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEmHPASIAEFSYPDGRFWVEDLA 435
                            |       10        |-     |  30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190   |   200       210       220       230       240    |  250       260 |     270       280       290       300       310       320       330       340       350       360     | 370     | 380       390       400       410   |   420       430     
                            |                19     26-MSE                                                                            109-MSE                                                                              194  199                                           245-MSE          262-MSE                                                                                                 366-MSE   376-MSE                               414-MSE                 
                            1-MSE                                                                                                       111-MSE

Chain B from PDB  Type:PROTEIN  Length:432
 aligned with FUCD_XANCP | Q8P3K2 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:432
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430  
           FUCD_XANCP     1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYPDGRFWVE 432
               SCOP domains -d1yeyb2 B:2-140 RTS beta protein                                                                                                           -------------------------------------------d1yeyb1 B:184-432 RTS beta protein                                                                                                                                                                                                                        SCOP domains
               CATH domains -1yeyB01 B:2-184 Enolase-like, N-terminal domain                                                                                                                                        1yeyB02 B:185-432 Enolase superfamily                                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhh............eeeeeeeee......eeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhheeeeeeeee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh....ee......hhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.ee.......hhhhhhhhhhhhhhhhh........eee...hhhhh.........ee............hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yey B   1 mRTIIALETHDVRFPTSRELDGSDAmNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVmHmAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAmAVDANQRWDVGPAIDWmRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAmADFVAITGKmEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEmHPASIAEFSYPDGRFWVE 432
                            |       10        20     |  30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260 |     270       280       290       300       310       320       330       340       350       360     | 370     | 380       390       400       410   |   420       430  
                            1-MSE                   26-MSE                                                                            109-MSE                                                                                                                                 245-MSE          262-MSE                                                                                                 366-MSE   376-MSE                               414-MSE              
                                                                                                                                        111-MSE

Chain C from PDB  Type:PROTEIN  Length:435
 aligned with FUCD_XANCP | Q8P3K2 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:435
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430     
           FUCD_XANCP     1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYPDGRFWVEDLA 435
               SCOP domains -d1yeyc2 C:2-140 RTS beta protein                                                                                                           -------------------------------------------d1yeyc1 C:184-435 RTS beta protein                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------1yeyC02 C:131-435 Enolase superfamily                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhh............eeeeeeeee......eeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhheeeee.hhhh...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh....ee......hhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.ee.......hhhhhhhhhhhhhhhhh........eee...hhhhh.........ee............hhhhhhhhh...hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yey C   1 mRTIIALETHDVRFPTSRELDGSDAmNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVmHmAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAmAVDANQRWDVGPAIDWmRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAmADFVAITGKmEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEmHPASIAEFSYPDGRFWVEDLA 435
                            |       10        20     |  30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260 |     270       280       290       300       310       320       330       340       350       360     | 370     | 380       390       400       410   |   420       430     
                            1-MSE                   26-MSE                                                                            109-MSE                                                                                                                                 245-MSE          262-MSE                                                                                                 366-MSE   376-MSE                               414-MSE                 
                                                                                                                                        111-MSE

Chain D from PDB  Type:PROTEIN  Length:433
 aligned with FUCD_XANCP | Q8P3K2 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:436
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430      
           FUCD_XANCP     1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYPDGRFWVEDLAA 436
               SCOP domains -d1yeyd2 D:2-140 RT   S beta protein                                                                                                        -------------------------------------------d1yeyd1 D:184-435 RTS beta protein                                                                                                                                                                                                                          - SCOP domains
               CATH domains -1yeyD01 D:2-179 En   olase-like, N-terminal domain                                                                                                                                1yeyD02 D:180-436 Enolase superfamily                                                                                                                                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhh---..........eeeeeeeee......eeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhheeeee..........hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh....ee......hhhhhhhhhhh....ee.......hhhhhhhhhhhhhhhhh.ee.......hhhhhhhhhhhhhhhhh........eee...hhhhh.........ee............hhhhhhhhh...hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yey D   1 mRTIIALETHDVRFPTSRE---SDAmNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVmHmAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAmAVDANQRWDVGPAIDWmRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAmADFVAITGKmEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEmHPASIAEFSYPDGRFWVEDLAA 436
                            |       10        |-  |  |  30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260 |     270       280       290       300       310       320       330       340       350       360     | 370     | 380       390       400       410   |   420       430      
                            1-MSE            19  23  |                                                                                109-MSE                                                                                                                                 245-MSE          262-MSE                                                                                                 366-MSE   376-MSE                               414-MSE                  
                                                    26-MSE                                                                              111-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Enolase N-terminal domain-like (211)

Superfamily: Enolase N-terminal domain-like (211)

Family: Enolase N-terminal domain-like (88)

Protein domain: RTS beta protein (1)

Xanthomonas campestris pv. campestris [TaxId: 340] (1)

1a	d1yeya2	A:2-140
1b	d1yeyb2	B:2-140
1c	d1yeyc2	C:2-140
1d	d1yeyd2	D:2-140

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Enolase C-terminal domain-like (212)

Family: D-glucarate dehydratase-like (65)

Protein domain: RTS beta protein (1)

Xanthomonas campestris pv. campestris [TaxId: 340] (1)

2a	d1yeya1	A:184-435
2b	d1yeyb1	B:184-432
2c	d1yeyc1	C:184-435
2d	d1yeyd1	D:184-435

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Enolase-like; domain 1 (252)

Homologous Superfamily: Enolase-like, N-terminal domain (130)

Campestris (Xanthomonas campestris pv) (1)

1a	1yeyD01	D:2-179
1b	1yeyB01	B:2-184

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Enolase superfamily (142)

Campestris (Xanthomonas campestris pv) (4)

2a	1yeyB02	B:185-432
2b	1yeyD02	D:180-436
2c	1yeyA02	A:132-435
2d	1yeyC02	C:131-435

(no "Pfam Domain" information available for 1YEY)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FUCD_XANCP | Q8P3K2)

molecular function
	GO:0050023	L-fuconate dehydratase activity	Catalysis of the reaction: L-fuconate = 2-dehydro-3-deoxy-L-fuconate + H(2)O.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0016052	carbohydrate catabolic process	The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:103 - Pro A:104	[ RasMol ]
		Gly B:103 - Pro B:104	[ RasMol ]
		Gly C:103 - Pro C:104	[ RasMol ]
		Gly D:103 - Pro D:104	[ RasMol ]
		Thr A:293 - Pro A:294	[ RasMol ]
		Thr B:293 - Pro B:294	[ RasMol ]
		Thr C:293 - Pro C:294	[ RasMol ]
		Thr D:293 - Pro D:294	[ RasMol ]
		Tyr A:424 - Pro A:425	[ RasMol ]
		Tyr B:424 - Pro B:425	[ RasMol ]
		Tyr C:424 - Pro C:425	[ RasMol ]
		Tyr D:424 - Pro D:425	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

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	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	1yey
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	FUCD_XANCP \| Q8P3K2	:	2hne 2hxt 2hxu

(no "Related Entries Specified in the PDB File" available for 1YEY)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 40)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (2, 8)

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Related Entries Specified in the PDB File