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1YEY
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (73 KB)
Biol.Unit 5 (140 KB)
Biol.Unit 6 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF L-FUCONATE DEHYDRATASE FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS STR. ATCC 33913
Authors
:
A. A. Fedorov, E. V. Fedorov, W. S. Yew, J. A. Gerlt, S. C. Almo, S. K. Burle York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
28 Dec 04 (Deposition) - 11 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.34
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: C,D (1x)
Biol. Unit 6: A,B (1x)
Keywords
:
Structural Genomics, L-Fuconate Dehydratase, Enolase Superfamily, Nysgxrc Target T2188, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, W. S. Yew, J. A. Gerlt, S. C. Almo
Crystal Structure Of L-Fuconate Dehydratase From Xanthomona Campestris Pv. Campestris Str. Atcc 33913
To Be Published
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Hetero Components
(2, 40)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
4
Ligand/Ion
MAGNESIUM ION
2
MSE
36
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:248 , ASN A:250 , GLU A:274 , GLU A:301 , HOH A:5231 , HOH A:5232
BINDING SITE FOR RESIDUE MG A 6001
2
AC2
SOFTWARE
LYS B:220 , ASP B:248 , GLU B:274 , GLU B:301 , HOH B:5233 , HOH B:5234
BINDING SITE FOR RESIDUE MG B 6002
3
AC3
SOFTWARE
LYS C:220 , ASP C:248 , GLU C:274 , GLU C:301 , HOH C:5235 , HOH C:5236
BINDING SITE FOR RESIDUE MG C 6003
4
AC4
SOFTWARE
LYS D:220 , ASP D:248 , ASN D:250 , GLU D:274 , GLU D:301 , HOH D:5237 , HOH D:5238
BINDING SITE FOR RESIDUE MG D 6004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1yeya2 (A:2-140)
1b: SCOP_d1yeyb2 (B:2-140)
1c: SCOP_d1yeyc2 (C:2-140)
1d: SCOP_d1yeyd2 (D:2-140)
2a: SCOP_d1yeya1 (A:184-435)
2b: SCOP_d1yeyb1 (B:184-432)
2c: SCOP_d1yeyc1 (C:184-435)
2d: SCOP_d1yeyd1 (D:184-435)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
RTS beta protein
(1)
Xanthomonas campestris pv. campestris [TaxId: 340]
(1)
1a
d1yeya2
A:2-140
1b
d1yeyb2
B:2-140
1c
d1yeyc2
C:2-140
1d
d1yeyd2
D:2-140
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
RTS beta protein
(1)
Xanthomonas campestris pv. campestris [TaxId: 340]
(1)
2a
d1yeya1
A:184-435
2b
d1yeyb1
B:184-432
2c
d1yeyc1
C:184-435
2d
d1yeyd1
D:184-435
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1yeyD01 (D:2-179)
1b: CATH_1yeyB01 (B:2-184)
2a: CATH_1yeyB02 (B:185-432)
2b: CATH_1yeyD02 (D:180-436)
2c: CATH_1yeyA02 (A:132-435)
2d: CATH_1yeyC02 (C:131-435)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Campestris (Xanthomonas campestris pv)
(1)
1a
1yeyD01
D:2-179
1b
1yeyB01
B:2-184
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Campestris (Xanthomonas campestris pv)
(4)
2a
1yeyB02
B:185-432
2b
1yeyD02
D:180-436
2c
1yeyA02
A:132-435
2d
1yeyC02
C:131-435
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (282 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
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Biol.Unit 3 (73 KB)
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Biol.Unit 4 (73 KB)
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