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(-) Description

Title :  CRYSTAL STRUCTURE OF MCSG TARGET APC27401 FROM SHIGELLA FLEXNERI
 
Authors :  J. S. Brunzelle, G. Minasov, X. Yang, L. Shuvalova, F. R. Collart, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Date :  22 Nov 04  (Deposition) - 04 Jan 05  (Release) - 17 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Structural Genomics, Pentamer, Hypothetical Protein, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Brunzelle, G. Minasov, X. Yang, L. Shuvalova, F. R. Collart, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Mcsg Target Apc27401 From Shigella Flexneri
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN S0862
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SHIGELLA FLEXNERI 2A STR. 2457T
    Organism Taxid: 198215
    Strain: 2A STR. 2457T

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric/Biological Unit (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1Y2I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y2I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y2I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y2I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y2I)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y2I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with YBJQ_SHIFL | Q83LS2 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:109
                                                                                                                                    107  
                                    10        20        30        40        50        60        70        80        90       100      |  
           YBJQ_SHIFL     1 MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR--   -
               SCOP domains d1y2ia_ A: Hypothetical protein YbjQ                                                                          SCOP domains
               CATH domains -1y2iA00 A:2-109 Hypothetical protein apc22750. Chain B                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........eeeeeeeeeeeeeeeehhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee.....eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1y2i A   1 mQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSmLmVSVSGTAVKTRRNI 109
                            |       10        20        30        40        50        60        70        80        90  | |  100         
                            |                                                                                          93-MSE            
                            1-MSE                                                                                        95-MSE          


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with YBJQ_SHIFL | Q83LS2 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:109
                                                                                                                                    107  
                                    10        20        30        40        50        60        70        80        90       100      |  
           YBJQ_SHIFL     1 MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR--   -
               SCOP domains d1y2ib_ B: Hypothetical protein YbjQ                                                                          SCOP domains
               CATH domains -1y2iB00 B:2-109 Hypothetical protein apc22750. Chain B                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........eeeeeeeeeeeeeeeehhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee.....eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1y2i B   1 mQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSmLmVSVSGTAVKTRRNI 109
                            |       10        20        30        40        50        60        70        80        90  | |  100         
                            1-MSE                                                                                      93-MSE            
                                                                                                                         95-MSE          


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with YBJQ_SHIFL | Q83LS2 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:109
                                                                                                                                    107  
                                    10        20        30        40        50        60        70        80        90       100      |  
           YBJQ_SHIFL     1 MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR--   -
               SCOP domains d1y2ic_ C: Hypothetical protein YbjQ                                                                          SCOP domains
               CATH domains -1y2iC00 C:2-109 Hypothetical protein apc22750. Chain B                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........eeeeeeeeeeeeeeeehhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee.....eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1y2i C   1 mQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSmLmVSVSGTAVKTRRNI 109
                            |       10        20        30        40        50        60        70        80        90  | |  100         
                            1-MSE                                                                                      93-MSE            
                                                                                                                         95-MSE          


Chain D from PDB  Type:PROTEIN  Length:109
 aligned with YBJQ_SHIFL | Q83LS2 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:109
                                                                                                                                    107  
                                    10        20        30        40        50        60        70        80        90       100      |  
           YBJQ_SHIFL     1 MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR--   -
               SCOP domains d1y2id_ D: Hypothetical protein YbjQ                                                                          SCOP domains
               CATH domains -1y2iD00 D:2-109 Hypothetical protein apc22750. Chain B                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee........eeeeeeeeeeeeeeeehhhhhhhhh.....eee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee.....eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1y2i D   1 mQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSmLmVSVSGTAVKTRRNI 109
                            |       10        20        30        40        50        60        70        80        90  | |  100         
                            1-MSE                                                                                      93-MSE            
                                                                                                                         95-MSE          


Chain E from PDB  Type:PROTEIN  Length:109
 aligned with YBJQ_SHIFL | Q83LS2 from UniProtKB/Swiss-Prot  Length:107

    Alignment length:109
                                                                                                                                    107  
                                    10        20        30        40        50        60        70        80        90       100      |  
           YBJQ_SHIFL     1 MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTAVKTRR--   -
               SCOP domains d1y2ie_ E: Hypothetical protein YbjQ                                                                          SCOP domains
               CATH domains -1y2iE00 E:2-109 Hypothetical protein apc22750. Chain B                                                       CATH domains
           Pfam domains (1) YbjQ_1-1y2iE01 E:1-105                                                                                   ---- Pfam domains (1)
           Pfam domains (2) YbjQ_1-1y2iE02 E:1-105                                                                                   ---- Pfam domains (2)
           Pfam domains (3) YbjQ_1-1y2iE03 E:1-105                                                                                   ---- Pfam domains (3)
           Pfam domains (4) YbjQ_1-1y2iE04 E:1-105                                                                                   ---- Pfam domains (4)
           Pfam domains (5) YbjQ_1-1y2iE05 E:1-105                                                                                   ---- Pfam domains (5)
         Sec.struct. author .ee........eeeeeeeeeeeeeeeehhhhhhhhh.....eee....hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee.....eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1y2i E   1 mQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSmLmVSVSGTAVKTRRNI 109
                            |       10        20        30        40        50        60        70        80        90  | |  100         
                            1-MSE                                                                                      93-MSE            
                                                                                                                         95-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: YbjQ-like (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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