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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN FROM PYROCOCCUS FURIOSUS PFU-403030-001
 
Authors :  L. Chen, W. Tempel, J. Habel, W. Zhou, D. Nguyen, S. -H. Chang, D. Lee, L. - L. C. Kelley, B. D. Dillard, Z. -J. Liu, S. Bridger, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr, H. -S. Lee, T. Li, F. L. Poole Ii, C. Shah F. J. Sugar, M. W. W. Adams, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  04 Nov 04  (Deposition) - 28 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Psi, Secsg, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Pyrococcus Furiosus, Conserved Hypothetical Protein, Hyperthermophile, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, W. Tempel, J. Habel, W. Zhou, D. Nguyen, S. -H. Chang, D. Lee, L. -L. C. Kelley, B. D. Dillard, Z. -J. Liu, S. Bridger, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr, H. -S. Lee, T. Li, F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-403030-001
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OXETANOCIN-LIKE PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 25)

Asymmetric/Biological Unit (2, 25)
No.NameCountTypeFull Name
1NI6Ligand/IonNICKEL (II) ION
2UNX19Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:33 , HIS A:67 , ASP A:68 , ASP A:124BINDING SITE FOR RESIDUE NI A 201
02AC2SOFTWAREHIS B:33 , HIS B:67 , ASP B:68 , ASP B:124BINDING SITE FOR RESIDUE NI B 201
03AC3SOFTWAREHIS C:33 , HIS C:67 , ASP C:68 , ASP C:124BINDING SITE FOR RESIDUE NI C 201
04AC4SOFTWAREHIS D:33 , HIS D:67 , ASP D:68 , ASP D:124BINDING SITE FOR RESIDUE NI D 201
05AC5SOFTWAREHIS E:33 , HIS E:67 , ASP E:68 , ASP E:124BINDING SITE FOR RESIDUE NI E 201
06AC6SOFTWAREHIS F:33 , HIS F:67 , ASP F:68 , ASP F:124BINDING SITE FOR RESIDUE NI F 201
07AC7SOFTWARELYS A:22 , GLY A:23 , VAL A:24 , ASN A:142 , SER C:138BINDING SITE FOR RESIDUE UNX A 2001
08AC8SOFTWAREPRO A:25 , ASN A:26 , UNX A:2006BINDING SITE FOR RESIDUE UNX A 2002
09AC9SOFTWAREGLY A:23 , UNX C:2008BINDING SITE FOR RESIDUE UNX A 2003
10BC1SOFTWARELEU A:137 , SER A:138 , LYS B:22 , ASN B:142BINDING SITE FOR RESIDUE UNX B 2004
11BC2SOFTWAREVAL B:24 , PRO B:25 , ASN B:26 , TYR B:135 , UNX B:2009BINDING SITE FOR RESIDUE UNX B 2005
12BC3SOFTWARESER A:138 , UNX A:2002 , GLY B:23BINDING SITE FOR RESIDUE UNX A 2006
13BC4SOFTWARELEU B:137 , SER B:138 , LYS C:22 , ASN C:142BINDING SITE FOR RESIDUE UNX B 2007
14BC5SOFTWAREUNX A:2003 , VAL C:24 , ASN C:26BINDING SITE FOR RESIDUE UNX C 2008
15BC6SOFTWARETYR B:135 , SER B:138 , UNX B:2005 , GLY C:23BINDING SITE FOR RESIDUE UNX B 2009
16BC7SOFTWARELYS D:22 , GLY D:23 , VAL D:24 , ALA D:140 , ASN D:142 , SER F:138BINDING SITE FOR RESIDUE UNX D 2010
17BC8SOFTWAREVAL D:24 , PRO D:25 , ASN D:26 , UNX D:2015BINDING SITE FOR RESIDUE UNX D 2011
18BC9SOFTWAREGLY D:23 , SER F:138 , UNX F:2017BINDING SITE FOR RESIDUE UNX D 2012
19CC1SOFTWARESER D:138 , LYS E:22 , GLY E:23 , VAL E:24 , ASN E:142BINDING SITE FOR RESIDUE UNX E 2013
20CC2SOFTWAREVAL E:24 , ASN E:26 , UNX E:2018BINDING SITE FOR RESIDUE UNX E 2014
21CC3SOFTWARETYR D:135 , SER D:138 , UNX D:2011 , GLY E:23BINDING SITE FOR RESIDUE UNX D 2015
22CC4SOFTWARELEU E:137 , SER E:138 , LYS F:22 , ASN F:142BINDING SITE FOR RESIDUE UNX F 2016
23CC5SOFTWAREPRO D:25 , UNX D:2012 , PRO F:25 , ASN F:26BINDING SITE FOR RESIDUE UNX F 2017
24CC6SOFTWARETYR E:135 , SER E:138 , UNX E:2014 , GLY F:23BINDING SITE FOR RESIDUE UNX E 2018
25CC7SOFTWAREARG A:16 , HIS A:33 , ASP A:124BINDING SITE FOR RESIDUE UNX A 2019

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XX7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XX7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XX7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XX7)

(-) Exons   (0, 0)

(no "Exon" information available for 1XX7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
               SCOP domains d1xx7a_ A: Oxetanocin-like protein PF0395                                                                                                                                    SCOP domains
               CATH domains 1xx7A00 A:1-172 Hypothetical protein af1432                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 A   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain B from PDB  Type:PROTEIN  Length:172
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
               SCOP domains d1xx7b_ B: Oxetanocin-like protein PF0395                                                                                                                                    SCOP domains
               CATH domains 1xx7B00 B:1-172 Hypothetical protein af1432                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 B   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain C from PDB  Type:PROTEIN  Length:172
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
               SCOP domains d1xx7c_ C: Oxetanocin-like protein PF0395                                                                                                                                    SCOP domains
               CATH domains 1xx7C00 C:1-172 Hypothetical protein af1432                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 C   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain D from PDB  Type:PROTEIN  Length:161
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRR 171
               SCOP domains d1xx7d_ D: Oxetanocin-like protein PF0395                                                                                                                                   SCOP domains
               CATH domains 1xx7D00 D:1-171 Hypothetical protein af1432                                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh........----------hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 D   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEF----------EISRYLREIIEEVRR 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     |   -      |160       170 
                                                                                                                                                                           146        157              


Chain E from PDB  Type:PROTEIN  Length:166
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
               SCOP domains d1xx7e_ E: Oxetanocin-like protein PF0395                                                                                                                                    SCOP domains
               CATH domains 1xx7E00 E:1-172 Hypothetical protein af1432                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh........------...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 E   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEF------LEKLEISRYLREIIEEVRRL 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     |   -  |    160       170  
                                                                                                                                                                           146    153                   


Chain F from PDB  Type:PROTEIN  Length:165
 aligned with Q8U3R1_PYRFU | Q8U3R1 from UniProtKB/TrEMBL  Length:176

    Alignment length:172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
         Q8U3R1_PYRFU     1 MIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL 172
               SCOP domains d1xx7f_ F: Oxetanocin-like protein PF0395                                                                                                                                    SCOP domains
               CATH domains 1xx7F00 F:1-172 Hypothetical protein af1432                                                                                                                                  CATH domains
           Pfam domains (1) -------HD_3-1xx7F01 F:8-169                                                                                                                                              --- Pfam domains (1)
           Pfam domains (2) -------HD_3-1xx7F02 F:8-169                                                                                                                                              --- Pfam domains (2)
           Pfam domains (3) -------HD_3-1xx7F03 F:8-169                                                                                                                                              --- Pfam domains (3)
           Pfam domains (4) -------HD_3-1xx7F04 F:8-169                                                                                                                                              --- Pfam domains (4)
           Pfam domains (5) -------HD_3-1xx7F05 F:8-169                                                                                                                                              --- Pfam domains (5)
           Pfam domains (6) -------HD_3-1xx7F06 F:8-169                                                                                                                                              --- Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh..-------hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xx7 F   1 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLSAQKYLNKEEAEAKALKDVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNAL-------ISRYLREIIEEVRRL 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
                                                                                                                                                                               150     158
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: HD_PDEase (93)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XX7)

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  1xx7
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