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1XX7
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (159 KB)
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(1)
Title
:
CONSERVED HYPOTHETICAL PROTEIN FROM PYROCOCCUS FURIOSUS PFU-403030-001
Authors
:
L. Chen, W. Tempel, J. Habel, W. Zhou, D. Nguyen, S. -H. Chang, D. Lee, L. - L. C. Kelley, B. D. Dillard, Z. -J. Liu, S. Bridger, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr, H. -S. Lee, T. Li, F. L. Poole Ii, C. Shah F. J. Sugar, M. W. W. Adams, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date
:
04 Nov 04 (Deposition) - 28 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Psi, Secsg, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Pyrococcus Furiosus, Conserved Hypothetical Protein, Hyperthermophile, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Chen, W. Tempel, J. Habel, W. Zhou, D. Nguyen, S. -H. Chang, D. Lee, L. -L. C. Kelley, B. D. Dillard, Z. -J. Liu, S. Bridger, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr, H. -S. Lee, T. Li, F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu-403030-001
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 25)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
1b: NICKEL (II) ION (NIb)
1c: NICKEL (II) ION (NIc)
1d: NICKEL (II) ION (NId)
1e: NICKEL (II) ION (NIe)
1f: NICKEL (II) ION (NIf)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
2r: UNKNOWN ATOM OR ION (UNXr)
2s: UNKNOWN ATOM OR ION (UNXs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NI
6
Ligand/Ion
NICKEL (II) ION
2
UNX
19
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:33 , HIS A:67 , ASP A:68 , ASP A:124
BINDING SITE FOR RESIDUE NI A 201
02
AC2
SOFTWARE
HIS B:33 , HIS B:67 , ASP B:68 , ASP B:124
BINDING SITE FOR RESIDUE NI B 201
03
AC3
SOFTWARE
HIS C:33 , HIS C:67 , ASP C:68 , ASP C:124
BINDING SITE FOR RESIDUE NI C 201
04
AC4
SOFTWARE
HIS D:33 , HIS D:67 , ASP D:68 , ASP D:124
BINDING SITE FOR RESIDUE NI D 201
05
AC5
SOFTWARE
HIS E:33 , HIS E:67 , ASP E:68 , ASP E:124
BINDING SITE FOR RESIDUE NI E 201
06
AC6
SOFTWARE
HIS F:33 , HIS F:67 , ASP F:68 , ASP F:124
BINDING SITE FOR RESIDUE NI F 201
07
AC7
SOFTWARE
LYS A:22 , GLY A:23 , VAL A:24 , ASN A:142 , SER C:138
BINDING SITE FOR RESIDUE UNX A 2001
08
AC8
SOFTWARE
PRO A:25 , ASN A:26 , UNX A:2006
BINDING SITE FOR RESIDUE UNX A 2002
09
AC9
SOFTWARE
GLY A:23 , UNX C:2008
BINDING SITE FOR RESIDUE UNX A 2003
10
BC1
SOFTWARE
LEU A:137 , SER A:138 , LYS B:22 , ASN B:142
BINDING SITE FOR RESIDUE UNX B 2004
11
BC2
SOFTWARE
VAL B:24 , PRO B:25 , ASN B:26 , TYR B:135 , UNX B:2009
BINDING SITE FOR RESIDUE UNX B 2005
12
BC3
SOFTWARE
SER A:138 , UNX A:2002 , GLY B:23
BINDING SITE FOR RESIDUE UNX A 2006
13
BC4
SOFTWARE
LEU B:137 , SER B:138 , LYS C:22 , ASN C:142
BINDING SITE FOR RESIDUE UNX B 2007
14
BC5
SOFTWARE
UNX A:2003 , VAL C:24 , ASN C:26
BINDING SITE FOR RESIDUE UNX C 2008
15
BC6
SOFTWARE
TYR B:135 , SER B:138 , UNX B:2005 , GLY C:23
BINDING SITE FOR RESIDUE UNX B 2009
16
BC7
SOFTWARE
LYS D:22 , GLY D:23 , VAL D:24 , ALA D:140 , ASN D:142 , SER F:138
BINDING SITE FOR RESIDUE UNX D 2010
17
BC8
SOFTWARE
VAL D:24 , PRO D:25 , ASN D:26 , UNX D:2015
BINDING SITE FOR RESIDUE UNX D 2011
18
BC9
SOFTWARE
GLY D:23 , SER F:138 , UNX F:2017
BINDING SITE FOR RESIDUE UNX D 2012
19
CC1
SOFTWARE
SER D:138 , LYS E:22 , GLY E:23 , VAL E:24 , ASN E:142
BINDING SITE FOR RESIDUE UNX E 2013
20
CC2
SOFTWARE
VAL E:24 , ASN E:26 , UNX E:2018
BINDING SITE FOR RESIDUE UNX E 2014
21
CC3
SOFTWARE
TYR D:135 , SER D:138 , UNX D:2011 , GLY E:23
BINDING SITE FOR RESIDUE UNX D 2015
22
CC4
SOFTWARE
LEU E:137 , SER E:138 , LYS F:22 , ASN F:142
BINDING SITE FOR RESIDUE UNX F 2016
23
CC5
SOFTWARE
PRO D:25 , UNX D:2012 , PRO F:25 , ASN F:26
BINDING SITE FOR RESIDUE UNX F 2017
24
CC6
SOFTWARE
TYR E:135 , SER E:138 , UNX E:2014 , GLY F:23
BINDING SITE FOR RESIDUE UNX E 2018
25
CC7
SOFTWARE
ARG A:16 , HIS A:33 , ASP A:124
BINDING SITE FOR RESIDUE UNX A 2019
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xx7a_ (A:)
1b: SCOP_d1xx7b_ (B:)
1c: SCOP_d1xx7c_ (C:)
1d: SCOP_d1xx7d_ (D:)
1e: SCOP_d1xx7e_ (E:)
1f: SCOP_d1xx7f_ (F:)
View:
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Classes
(
)
(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
HD domain
(20)
Protein domain
:
Oxetanocin-like protein PF0395
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1xx7a_
A:
1b
d1xx7b_
B:
1c
d1xx7c_
C:
1d
d1xx7d_
D:
1e
d1xx7e_
E:
1f
d1xx7f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1xx7A00 (A:1-172)
1b: CATH_1xx7B00 (B:1-172)
1c: CATH_1xx7C00 (C:1-172)
1d: CATH_1xx7E00 (E:1-172)
1e: CATH_1xx7F00 (F:1-172)
1f: CATH_1xx7D00 (D:1-171)
View:
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Classes
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hypothetical protein af1432
(13)
Homologous Superfamily
:
Hypothetical protein af1432
(13)
Pyrococcus furiosus. Organism_taxid: 2261.
(1)
1a
1xx7A00
A:1-172
1b
1xx7B00
B:1-172
1c
1xx7C00
C:1-172
1d
1xx7E00
E:1-172
1e
1xx7F00
F:1-172
1f
1xx7D00
D:1-171
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_HD_3_1xx7F01 (F:8-169)
1b: PFAM_HD_3_1xx7F02 (F:8-169)
1c: PFAM_HD_3_1xx7F03 (F:8-169)
1d: PFAM_HD_3_1xx7F04 (F:8-169)
1e: PFAM_HD_3_1xx7F05 (F:8-169)
1f: PFAM_HD_3_1xx7F06 (F:8-169)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HD_PDEase
(93)
Family
:
HD_3
(1)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
HD_3-1xx7F01
F:8-169
1b
HD_3-1xx7F02
F:8-169
1c
HD_3-1xx7F03
F:8-169
1d
HD_3-1xx7F04
F:8-169
1e
HD_3-1xx7F05
F:8-169
1f
HD_3-1xx7F06
F:8-169
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]
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