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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN FROM CLOSTRIDIUM THERMOCELLUM CTH-2968
 
Authors :  M. Zhao, J. Chang, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee, J. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, H. Zhang, W. B. Arendall Iii, L. Ljundahl, Z. -J. Liu, J. Rose, J. S. Richardson, D. C. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  14 Oct 04  (Deposition) - 14 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Conserved Hypothetical Protein, Clostridium Thermocellum, Protein Structure Initiative, Psi, Southeast Collaboratory For Structural Genomics, Secsg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhao, J. Chang, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee, J. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, H. Zhang, W. B. Arendall Iii, L. Ljundahl, Z. -J. Liu, J. Rose, J. S. Richardson, D. C. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Conserved Hypothetical Protein From Clostridium Thermocellum Cth-2968
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE TRANSLATION INITIATION INHIBITOR, YJGF FAMILY
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 1515

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric/Biological Unit (2, 22)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2UNX17Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:65 , UNX A:402BINDING SITE FOR RESIDUE UNX A 401
02AC2SOFTWAREVAL A:5 , UNX A:401 , UNX A:404BINDING SITE FOR RESIDUE UNX A 402
03AC3SOFTWARETHR A:8 , LYS A:10 , ASN A:61 , ALA A:65BINDING SITE FOR RESIDUE UNX A 403
04AC4SOFTWAREGLU A:4 , VAL A:5 , UNX A:402BINDING SITE FOR RESIDUE UNX A 404
05AC5SOFTWARELYS A:10 , GLU A:57 , ASN A:58 , ASN A:61 , UNX A:502BINDING SITE FOR RESIDUE UNX A 501
06AC6SOFTWAREGLN A:54 , GLU A:57 , UNX A:501BINDING SITE FOR RESIDUE UNX A 502
07AC7SOFTWARETYR A:29 , TYR B:29 , TYR C:29BINDING SITE FOR RESIDUE UNX A 503
08AC8SOFTWARELYS A:75 , THR A:77 , GLU A:121 , UNX A:507BINDING SITE FOR RESIDUE UNX A 504
09AC9SOFTWAREPHE A:79 , GLU A:121 , UNX A:507 , THR C:77 , UNX C:506BINDING SITE FOR RESIDUE UNX A 505
10BC1SOFTWAREUNX A:505 , UNX A:507 , HOH B:529 , PHE C:79BINDING SITE FOR RESIDUE UNX C 506
11BC2SOFTWARETHR A:77 , GLU A:121 , UNX A:504 , UNX A:505 , GLU B:121 , UNX C:506BINDING SITE FOR RESIDUE UNX A 507
12BC3SOFTWAREUNX A:509 , ARG C:104 , CYS C:106BINDING SITE FOR RESIDUE UNX C 508
13BC4SOFTWARETYR A:18 , ARG C:104 , UNX C:508BINDING SITE FOR RESIDUE UNX A 509
14BC5SOFTWAREASN A:9 , ALA A:14 , UNX A:511BINDING SITE FOR RESIDUE UNX A 510
15BC6SOFTWAREVAL A:6 , ALA A:14 , SER A:19 , GLN A:20 , UNX A:510BINDING SITE FOR RESIDUE UNX A 511
16BC7SOFTWAREVAL B:6 , LYS B:7 , GLN B:20 , UNX B:513BINDING SITE FOR RESIDUE UNX B 512
17BC8SOFTWAREGLU B:13 , ALA B:14 , UNX B:512BINDING SITE FOR RESIDUE UNX B 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XRG)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:99 -Pro A:100
2Glu B:99 -Pro B:100
3Glu C:99 -Pro C:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XRG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XRG)

(-) Exons   (0, 0)

(no "Exon" information available for 1XRG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
 aligned with A3DJ68_CLOTH | A3DJ68 from UniProtKB/TrEMBL  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
         A3DJ68_CLOTH     2 YIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
               SCOP domains d1xrga_ A: Purine regulatory protein YabJ                                                                                     SCOP domains
               CATH domains 1xrgA00 A:2-126  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..............eeee..eeee................hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhh.......eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrg A   2 YIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDmDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
                                    11        21        31        41        51        61        71        81 |      91       101       111       121     
                                                                                                            83-MSE                                       


Chain B from PDB  Type:PROTEIN  Length:138
 aligned with A3DJ68_CLOTH | A3DJ68 from UniProtKB/TrEMBL  Length:126

    Alignment length:138
                                        1                                                                                                                             
                                     -  |      8        18        28        38        48        58        68        78        88        98       108       118        
         A3DJ68_CLOTH     - ------------MYIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
               SCOP domains d1xrgb_ B: Purine regulatory protein YabJ                                                                                                  SCOP domains
               CATH domains 1xrgB00 B:-11-126  [code=3.30.1330.40, no name defined]                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee..eeeeee..............eeee..eeee................hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh........eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xrg B -11 SQSTSLYKKAGLmYIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDmDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
                                    -2  |      8        18        28        38        48        58        68        78    |   88        98       108       118        
                                        1-MSE                                                                            83-MSE                                       


Chain C from PDB  Type:PROTEIN  Length:137
 aligned with A3DJ68_CLOTH | A3DJ68 from UniProtKB/TrEMBL  Length:126

    Alignment length:137
                                       1                                                                                                                             
                                     - |       9        19        29        39        49        59        69        79        89        99       109       119       
         A3DJ68_CLOTH     - -----------MYIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
               SCOP domains d1xrgc_ C: Purine regulatory protein YabJ                                                                                                 SCOP domains
               CATH domains 1xrgC00 C:-10-126  [code=3.30.1330.40, no name defined]                                                                                   CATH domains
           Pfam domains (1) ------------------Ribonuc_L-PSP-1xrgC01 C:8-126                                                                                           Pfam domains (1)
           Pfam domains (2) ------------------Ribonuc_L-PSP-1xrgC02 C:8-126                                                                                           Pfam domains (2)
           Pfam domains (3) ------------------Ribonuc_L-PSP-1xrgC03 C:8-126                                                                                           Pfam domains (3)
         Sec.struct. author .....eeee..eeeeee..............eeee..eeee................hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrg C -10 QSTSLYKKAGLmYIEVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDmDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 126
                                    -1 |       9        19        29        39        49        59        69        79   |    89        99       109       119       
                                       1-MSE                                                                            83-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Ribonuc_L-PSP] (16)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XRG)

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