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1XRG
Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
CONSERVED HYPOTHETICAL PROTEIN FROM CLOSTRIDIUM THERMOCELLUM CTH-2968
Authors
:
M. Zhao, J. Chang, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee, J. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, H. Zhang, W. B. Arendall Iii, L. Ljundahl, Z. -J. Liu, J. Rose, J. S. Richardson, D. C. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date
:
14 Oct 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Conserved Hypothetical Protein, Clostridium Thermocellum, Protein Structure Initiative, Psi, Southeast Collaboratory For Structural Genomics, Secsg, Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zhao, J. Chang, J. Habel, I. Kataeva, H. Xu, L. Chen, D. Lee, J. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, H. Zhang, W. B. Arendall Iii, L. Ljundahl, Z. -J. Liu, J. Rose, J. S. Richardson, D. C. Richardson, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Conserved Hypothetical Protein From Clostridium Thermocellum Cth-2968
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 22)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
17
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , UNX A:402
BINDING SITE FOR RESIDUE UNX A 401
02
AC2
SOFTWARE
VAL A:5 , UNX A:401 , UNX A:404
BINDING SITE FOR RESIDUE UNX A 402
03
AC3
SOFTWARE
THR A:8 , LYS A:10 , ASN A:61 , ALA A:65
BINDING SITE FOR RESIDUE UNX A 403
04
AC4
SOFTWARE
GLU A:4 , VAL A:5 , UNX A:402
BINDING SITE FOR RESIDUE UNX A 404
05
AC5
SOFTWARE
LYS A:10 , GLU A:57 , ASN A:58 , ASN A:61 , UNX A:502
BINDING SITE FOR RESIDUE UNX A 501
06
AC6
SOFTWARE
GLN A:54 , GLU A:57 , UNX A:501
BINDING SITE FOR RESIDUE UNX A 502
07
AC7
SOFTWARE
TYR A:29 , TYR B:29 , TYR C:29
BINDING SITE FOR RESIDUE UNX A 503
08
AC8
SOFTWARE
LYS A:75 , THR A:77 , GLU A:121 , UNX A:507
BINDING SITE FOR RESIDUE UNX A 504
09
AC9
SOFTWARE
PHE A:79 , GLU A:121 , UNX A:507 , THR C:77 , UNX C:506
BINDING SITE FOR RESIDUE UNX A 505
10
BC1
SOFTWARE
UNX A:505 , UNX A:507 , HOH B:529 , PHE C:79
BINDING SITE FOR RESIDUE UNX C 506
11
BC2
SOFTWARE
THR A:77 , GLU A:121 , UNX A:504 , UNX A:505 , GLU B:121 , UNX C:506
BINDING SITE FOR RESIDUE UNX A 507
12
BC3
SOFTWARE
UNX A:509 , ARG C:104 , CYS C:106
BINDING SITE FOR RESIDUE UNX C 508
13
BC4
SOFTWARE
TYR A:18 , ARG C:104 , UNX C:508
BINDING SITE FOR RESIDUE UNX A 509
14
BC5
SOFTWARE
ASN A:9 , ALA A:14 , UNX A:511
BINDING SITE FOR RESIDUE UNX A 510
15
BC6
SOFTWARE
VAL A:6 , ALA A:14 , SER A:19 , GLN A:20 , UNX A:510
BINDING SITE FOR RESIDUE UNX A 511
16
BC7
SOFTWARE
VAL B:6 , LYS B:7 , GLN B:20 , UNX B:513
BINDING SITE FOR RESIDUE UNX B 512
17
BC8
SOFTWARE
GLU B:13 , ALA B:14 , UNX B:512
BINDING SITE FOR RESIDUE UNX B 513
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1xrga_ (A:)
1b: SCOP_d1xrgb_ (B:)
1c: SCOP_d1xrgc_ (C:)
View:
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
YjgF-like
(45)
Family
:
YjgF/L-PSP
(23)
Protein domain
:
Purine regulatory protein YabJ
(2)
Clostridium thermocellum [TaxId: 1515]
(1)
1a
d1xrga_
A:
1b
d1xrgb_
B:
1c
d1xrgc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1xrgA00 (A:2-126)
1b: CATH_1xrgC00 (C:-10-126)
1c: CATH_1xrgB00 (B:-11-126)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.40, no name defined]
(35)
Clostridium thermocellum. Organism_taxid: 1515.
(1)
1a
1xrgA00
A:2-126
1b
1xrgC00
C:-10-126
1c
1xrgB00
B:-11-126
[
close CATH info
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Ribonuc_L_PSP_1xrgC01 (C:8-126)
1b: PFAM_Ribonuc_L_PSP_1xrgC02 (C:8-126)
1c: PFAM_Ribonuc_L_PSP_1xrgC03 (C:8-126)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Ribonuc_L-PSP]
(16)
Family
:
Ribonuc_L-PSP
(16)
Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
(1)
1a
Ribonuc_L-PSP-1xrgC01
C:8-126
1b
Ribonuc_L-PSP-1xrgC02
C:8-126
1c
Ribonuc_L-PSP-1xrgC03
C:8-126
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Protein & NOT PROSITE
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Chain C
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (69 KB)
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