Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS HMG-COA SYNTHASE WITH ACETOACETYL-COA AND ACETYLATED CYSTEINE
 
Authors :  M. J. Theisen, I. Misra, D. Saadat, N. Campobasso, H. M. Miziorko, D. H. T. Harrison
Date :  08 Oct 04  (Deposition) - 02 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Hmg-Coa Synthase, Hmgs, Coenzyme A, Thiolase Fold, Condensing Enzyme, Cholesterol Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Theisen, I. Misra, D. Saadat, N. Campobasso, H. M. Miziorko, D. H. T. Harrison
3-Hydroxy-3-Methylglutaryl-Coa Synthase Intermediate Complex Observed In "Real-Time"
Proc. Natl. Acad. Sci. Usa V. 47 16442 2004
PubMed-ID: 15498869  |  Reference-DOI: 10.1073/PNAS.0405809101
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-HYDROXY-3-METHYLGLUTARYL COA SYNTHASE
    Chains: A, B, C, D
    EC Number: 2.3.3.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET23D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MVAS
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 46170
    Strain: SUBSP. AUREUS

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1CAA4Ligand/IonACETOACETYL-COENZYME A
2SCY4Mod. Amino AcidS-ACETYL-CYSTEINE
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1CAA2Ligand/IonACETOACETYL-COENZYME A
2SCY2Mod. Amino AcidS-ACETYL-CYSTEINE
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1CAA2Ligand/IonACETOACETYL-COENZYME A
2SCY2Mod. Amino AcidS-ACETYL-CYSTEINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:192 , TYR A:193BINDING SITE FOR RESIDUE SO4 A 1501
02AC2SOFTWAREGLY A:148 , HOH A:1530BINDING SITE FOR RESIDUE SO4 A 1502
03AC3SOFTWAREASP A:29 , ASN A:31 , GLY A:36 , SCY A:111 , TYR A:143 , GLY A:148 , PHE A:185 , VAL A:196 , GLY A:198 , SER A:201 , TYR A:205 , HIS A:233 , PRO A:235 , PHE A:236 , MET A:239 , ASN A:275 , SER A:307 , HOH A:1523 , HOH A:1588 , HOH A:1599BINDING SITE FOR RESIDUE CAA A 1401
04AC4SOFTWAREHIS B:191 , LYS B:192 , TYR B:193 , HOH B:2622BINDING SITE FOR RESIDUE SO4 B 2501
05AC5SOFTWARESER B:147 , GLY B:148 , HOH B:2536BINDING SITE FOR RESIDUE SO4 B 2502
06AC6SOFTWAREASP B:29 , ASN B:31 , LYS B:32 , GLY B:36 , SCY B:111 , TYR B:143 , GLY B:148 , SER B:201 , HIS B:233 , PRO B:235 , PHE B:236 , MET B:239 , ASN B:275 , SER B:307 , HOH B:2529 , HOH B:2586BINDING SITE FOR RESIDUE CAA B 2401
07AC7SOFTWAREHIS C:191 , LYS C:192BINDING SITE FOR RESIDUE SO4 C 3501
08AC8SOFTWARESER C:147 , GLY C:148 , HOH C:3532BINDING SITE FOR RESIDUE SO4 C 3502
09AC9SOFTWAREASP C:29 , ASN C:31 , LYS C:32 , GLY C:36 , SCY C:111 , TYR C:143 , GLY C:148 , GLY C:149 , THR C:152 , SER C:201 , HIS C:233 , PRO C:235 , PHE C:236 , LYS C:238 , ASN C:275 , SER C:307 , HOH C:3561 , HOH C:3607BINDING SITE FOR RESIDUE CAA C 3401
10BC1SOFTWAREHIS D:191 , LYS D:192 , TYR D:193BINDING SITE FOR RESIDUE SO4 D 4501
11BC2SOFTWAREGLY D:148BINDING SITE FOR RESIDUE SO4 D 4502
12BC3SOFTWAREASP D:29 , ASN D:31 , LYS D:32 , GLY D:36 , SCY D:111 , TYR D:143 , GLY D:148 , GLY D:198 , SER D:201 , TYR D:205 , HIS D:233 , PRO D:235 , PHE D:236 , ASN D:275 , SER D:307 , HOH D:4522 , HOH D:4595BINDING SITE FOR RESIDUE CAA D 4401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XPL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:308 -Ser A:309
2Gly B:308 -Ser B:309
3Gly C:308 -Ser C:309
4Gly D:308 -Ser D:309

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XPL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XPL)

(-) Exons   (0, 0)

(no "Exon" information available for 1XPL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with A0A0H3K1U2_S | A0A0H3K1U2 from UniProtKB/TrEMBL  Length:388

    Alignment length:390
                                                                                                                                         112                                                                                                                                                                                                                                                                                      
                                                                                                                                       111 |                                                                                                                                                                                                                                                                                 388  
                                    11        21        31        41        51        61        71        81        91       101       111 |     120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       | -
         A0A0H3K1U2_S     2 TIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAC-YAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE--   -
               SCOP domains d1xpla1 A:2-167 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                           d1xpla2 A:168-388 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                                                                               -- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...eeeehhhhhhhh..hhhhhhh.....eeee.....hhhhhhhhhhhh..hhhhhhheeeeeee.........hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......hhhhheeeeeeeeeee....eee....eeee.....ee........eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhh........hhhhhh...eeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xpl A   2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAcCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPELE 390
                                    11        21        31        41        51        61        71        81        91       101       111       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
                                                                                                                                       111-SCY                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:390
 aligned with A0A0H3K1U2_S | A0A0H3K1U2 from UniProtKB/TrEMBL  Length:388

    Alignment length:390
                                                                                                                                         112                                                                                                                                                                                                                                                                                      
                                                                                                                                       111 |                                                                                                                                                                                                                                                                                 388  
                                    11        21        31        41        51        61        71        81        91       101       111 |     120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       | -
         A0A0H3K1U2_S     2 TIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAC-YAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE--   -
               SCOP domains d1xplb1 B:2-167 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                           d1xplb2 B:168-388 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                                                                               -- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...eeeehhhhhhhh..hhhhhhh.....eeee.....hhhhhhhhhhhh..hhhhhhheeeeeee.........hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......hhhhheeeeeeeeeee....eee....eeee.....ee........eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhh.......hhhhhh...eeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xpl B   2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAcCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPELE 390
                                    11        21        31        41        51        61        71        81        91       101       111       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
                                                                                                                                       111-SCY                                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:390
 aligned with A0A0H3K1U2_S | A0A0H3K1U2 from UniProtKB/TrEMBL  Length:388

    Alignment length:390
                                                                                                                                         112                                                                                                                                                                                                                                                                                      
                                                                                                                                       111 |                                                                                                                                                                                                                                                                                 388  
                                    11        21        31        41        51        61        71        81        91       101       111 |     120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       | -
         A0A0H3K1U2_S     2 TIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAC-YAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE--   -
               SCOP domains d1xplc1 C:2-167 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                           d1xplc2 C:168-388 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                                                                               -- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...eeeehhhhhhhh..hhhhhhh.....eeee.....hhhhhhhhhhhh....hhhhheeeeeee.........hhhhhhhhhh......eeeeee.....hhhhhhhhhhhhhh.....eeeeeeeeee.......hhhhheeeeeeeeeee....eee....eeee.....ee........ee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhh.......hhhhh....eeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xpl C   2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAcCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPELE 390
                                    11        21        31        41        51        61        71        81        91       101       111       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
                                                                                                                                       111-SCY                                                                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:390
 aligned with A0A0H3K1U2_S | A0A0H3K1U2 from UniProtKB/TrEMBL  Length:388

    Alignment length:390
                                                                                                                                         112                                                                                                                                                                                                                                                                                      
                                                                                                                                       111 |                                                                                                                                                                                                                                                                                 388  
                                    11        21        31        41        51        61        71        81        91       101       111 |     120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       | -
         A0A0H3K1U2_S     2 TIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAC-YAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE--   -
               SCOP domains d1xpld1 D:2-167 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                           d1xpld2 D:168-388 3-hydroxy-3-methylglutaryl CoA synthase MvaS                                                                                                                                                               -- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...eeeehhhhhhhh..hhhhhhh.....eeee.....hhhhhhhhhhhh..hhhhhhheeeeeee.........hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......hhhhheeeeeeeeeee....eee....eeee.....ee........ee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhh......eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhh.......hhhhhh...eeeeee..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xpl D   2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAcCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPELE 390
                                    11        21        31        41        51        61        71        81        91       101       111       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
                                                                                                                                       111-SCY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XPL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XPL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XPL)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CAA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SCY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:308 - Ser A:309   [ RasMol ]  
    Gly B:308 - Ser B:309   [ RasMol ]  
    Gly C:308 - Ser C:309   [ RasMol ]  
    Gly D:308 - Ser D:309   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1xpl
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0A0H3K1U2_S | A0A0H3K1U2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.3.3.10
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A0A0H3K1U2_S | A0A0H3K1U2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3K1U2_S | A0A0H3K1U2: 1xpk 1xpm

(-) Related Entries Specified in the PDB File

1xpk 1xpm