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Asym./Biol. Unit (Jmol Viewer)

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Title :   X-RAY STRUCTURE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CAR10 FROM C. ACETOBUTYLICUM

Authors :   A. P. Kuzin, Y. Chen, S. Vorobiev, W. Yong, T. Acton, C. -K. Ho, K. Conover, B. Cooper, M. Ciano, R. Xiao, G. Montelione, L. Tong, J. Hunt, Northeast Structural Genomics Consortium (Nesg)

Date :   30 Aug 04 (Deposition) - 14 Sep 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Car10, Q97Kl0, Structural Genomics, Protein Structure Initiative, Nesg, Psi, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Kuzin, Y. Chen, S. Vorobiev, W. Yong, T. Acton, C. -K. Ho, K. Conover, B. Cooper, M. Ciano, R. Xiao, G. Montelione, L. Tong, J. Hunt
X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - CLOSTRIDIUM ACETOBUTYLICUM Q97KL0
	Chains	:	A, B, C
	Engineered	:	YES
	Organism Scientific	:	CLOSTRIDIUM ACETOBUTYLICUM
	Organism Taxid	:	1488
	Synonym	:	CAR10

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 11)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:44 , THR A:45 , THR A:46 , ARG A:123 , ARG A:125 , HOH A:218	BINDING SITE FOR RESIDUE SO4 A 201
2	AC2	SOFTWARE	HIS B:44 , THR B:45 , THR B:46 , ARG B:123 , ARG B:125 , HOH B:214 , HOH B:223	BINDING SITE FOR RESIDUE SO4 B 202
3	AC3	SOFTWARE	HIS C:44 , THR C:45 , THR C:46 , ARG C:123 , ARG C:125 , HOH C:209 , HOH C:221	BINDING SITE FOR RESIDUE SO4 C 203
4	AC4	SOFTWARE	ARG A:61	BINDING SITE FOR RESIDUE SO4 A 204
5	AC5	SOFTWARE	LYS A:78 , ARG C:61	BINDING SITE FOR RESIDUE SO4 A 205

(no "SS Bond" information available for 1XBF)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:121	-	Pro A:122
2	Gly B:121	-	Pro B:122
3	Gly C:121	-	Pro C:122

(no "SAP(SNP)/Variant" information available for 1XBF)

(no "PROSITE Motif" information available for 1XBF)

(no "Exon" information available for 1XBF)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:131
 aligned with Q97KL0_CLOAB | Q97KL0 from UniProtKB/TrEMBL  Length:132

    Alignment length:131
                                                                                                                                                          132  
                                    13        23        33        43        53        63        73        83        93       103       113       123        |- 
         Q97KL0_CLOAB     4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKII--   -
               SCOP domains d1xbfa_ A: B.subtilis YugU ortolog CAC0907                                                                                          SCOP domains
               CATH domains 1xbfA00 A:4-134 Hypothetical protein                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeehhhhhhhhhhhhh..eeeeeee.....eeeeeee...hhhhhhhhhhhhhhh...........hhhhhhhhhhhh.eeeeeee..ee.....eeeeeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xbf A   4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGmAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLmGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKIILE 134
                                    13        23        33   |    43        53        63        73        83        93       103       113       123       133 
                                                            37-MSE                                                  93-MSE

Chain B from PDB  Type:PROTEIN  Length:130
 aligned with Q97KL0_CLOAB | Q97KL0 from UniProtKB/TrEMBL  Length:132

    Alignment length:130
                                                                                                                                                          132 
                                    13        23        33        43        53        63        73        83        93       103       113       123        |-
         Q97KL0_CLOAB     4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKII-   -
               SCOP domains d1xbfb_ B: B.subtilis YugU ortolog CAC0907                                                                                         SCOP domains
               CATH domains 1xbfB00 B:4-133 Hypothetical protein                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeehhhhhhhhhhhhh...eeeeee.....eeeeeee..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhh.eeeeeee..ee.....eeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xbf B   4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGmAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLmGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKIIL 133
                                    13        23        33   |    43        53        63        73        83        93       103       113       123       133
                                                            37-MSE                                                  93-MSE

Chain C from PDB  Type:PROTEIN  Length:121
 aligned with Q97KL0_CLOAB | Q97KL0 from UniProtKB/TrEMBL  Length:132

    Alignment length:131
                                                                                                                                                           132 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132 
         Q97KL0_CLOAB     3 GVIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKII-   -
               SCOP domains d1xbfc_ C: B.subtilis YugU ortolog CAC0907                                                                                          SCOP domains
               CATH domains 1xbfC00 C:3-133 Hypothetical protein                                                                                                CATH domains
           Pfam domains (1) ---------------UPF0047-1xbfC01 C:18-132                                                                                           - Pfam domains (1)
           Pfam domains (2) ---------------UPF0047-1xbfC02 C:18-132                                                                                           - Pfam domains (2)
           Pfam domains (3) ---------------UPF0047-1xbfC03 C:18-132                                                                                           - Pfam domains (3)
         Sec.struct. author ..eeeeee.....eeeehhhhhhhhhhhhh...eeeeee.....eeeeeee..hhhhhhhhhhhhhhhh.----------hhhhhhhhhhhh.eeeeee..........eeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xbf C   3 GVIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGmAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP----------NSHAHIKASLmGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKIIL 133
                                    12        22        32    |   42        52        62        72         -|       92|      102       112       122       132 
                                                             37-MSE                             72         83        93-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: YjbQ-like (9)

Superfamily: YjbQ-like (9)

Family: YjbQ-like (6)

Protein domain: B.subtilis YugU ortolog CAC0907 (2)

Clostridium acetobutylicum [TaxId: 1488] (2)

1a	d1xbfa_	A:
1b	d1xbfb_	B:
1c	d1xbfc_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: Hypothetical protein (8)

Clostridium acetobutylicum. Organism_taxid: 1488 (1)

1a	1xbfA00	A:4-134
1b	1xbfB00	B:4-133
1c	1xbfC00	C:3-133

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: UPF0047] (8)

Family: UPF0047 (8)

Clostridium acetobutylicum (2)

1a	UPF0047-1xbfC01	C:18-132
1b	UPF0047-1xbfC02	C:18-132
1c	UPF0047-1xbfC03	C:18-132

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1XBF)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:121 - Pro A:122	[ RasMol ]
		Gly B:121 - Pro B:122	[ RasMol ]
		Gly C:121 - Pro C:122	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 11)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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