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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN YJBQ/UPF0047 FAMILY, ORTHOLOG YUGU B.SUBTILIS (CA_C0907) FROM CLOSTRIDIUM ACETOBUTYLICUM AT 1.31 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  24 Sep 04  (Deposition) - 05 Oct 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.31
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Yjbq-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Conserved Protein Yjbq/Upf0047 Family, Ortholog Yugu B. Subtilis (15023806) From Clostridium Acetobutylicum At 1. 31 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED CONSERVED PROTEIN YJBQ/UPF0047 FAMILY, ORTHOLOG YUGU B.SUBTILIS
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CAC0907
    Organism Scientific: CLOSTRIDIUM ACETOBUTYLICUM
    Organism Taxid: 1488

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:92 , HOH A:138BINDING SITE FOR RESIDUE NA A 133

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VMH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:121 -Pro A:122

 Sequence-Structure Mapping

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(no "SAP(SNP)/Variant" information available for 1VMH)

(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q97KL0_CLOAB | Q97KL0 from UniProtKB/TrEMBL  Length:132

    Alignment length:129
                                    13        23        33        43        53        63        73        83        93       103       113       123         
         Q97KL0_CLOAB     4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKII 132
               SCOP domains d1vmha_ A: B.subtilis YugU ortolog CAC0907                                                                                        SCOP domains
               CATH domains 1vmhA00 A:4-132 Hypothetical protein                                                                                              CATH domains
               Pfam domains --------------UPF0047-1vmhA01 A:18-132                                                                                            Pfam domains
         Sec.struct. author .eeeeee.....eeeehhhhhhhhhhhhh...eeeeee.....eeeeeee..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhh.eeeeeee..ee.....eeeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vmh A   4 VIEYSLKTSNDDQFIDITNLVKKAVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKII 132
                                    13        23        33        43        53        63        73        83        93       103       113       123
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: UPF0047] (8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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        Q97KL0_CLOAB | Q97KL0: 1xbf

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