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(-) Description

Title :  HEMOGLOBIN DODECAMER FROM LUMBRICUS ERYTHROCRUORIN
 
Authors :  K. Strand, J. E. Knapp, B. Bhyravbhatla, W. E. Royer Jr.
Date :  20 Aug 04  (Deposition) - 30 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Crystal; Dodecamer; Allosteric, Oxygen Storage/Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Strand, J. E. Knapp, B. Bhyravbhatla, W. E. Royer Jr.
Crystal Structure Of The Hemoglobin Dodecamer From Lumbricus Erythrocruorin: Allosteric Core Of Giant Annelid Respiratory Complexes
J. Mol. Biol. V. 344 119 2004
PubMed-ID: 15504406  |  Reference-DOI: 10.1016/J.JMB.2004.08.094
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLOBIN IV, EXTRACELLULAR
    Chains: A, E, I
    Organ: BLOOD
    Organism Common: COMMON EARTHWORM
    Organism Scientific: LUMBRICUS TERRESTRIS
    Organism Taxid: 6398
    Synonym: ERYTHROCRUORIN, GLOBIN A
 
Molecule 2 - GLOBIN II, EXTRACELLULAR
    Chains: B, F, J
    Organ: BLOOD
    Organism Common: COMMON EARTHWORM
    Organism Scientific: LUMBRICUS TERRESTRIS
    Organism Taxid: 6398
    Synonym: ERYTHROCRUORIN;
GLOBIN AIII;
GLOBIN B
 
Molecule 3 - GLOBIN III, EXTRACELLULAR
    Chains: C, G, K
    Organ: BLOOD
    Organism Common: COMMON EARTHWORM
    Organism Scientific: LUMBRICUS TERRESTRIS
    Organism Taxid: 6398
    Synonym: ERYTHROCRUORIN;
GLOBIN C
 
Molecule 4 - HEMOGLOBIN CHAIN D1
    Chains: D, H, L
    Organ: BLOOD
    Organism Common: COMMON EARTHWORM
    Organism Scientific: LUMBRICUS TERRESTRIS
    Organism Taxid: 6398

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 27)

Asymmetric/Biological Unit (3, 27)
No.NameCountTypeFull Name
1CMO12Ligand/IonCARBON MONOXIDE
2HEM12Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3PO43Ligand/IonPHOSPHATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG F:50 , ASP G:96 , HIS G:97 , HIS G:100BINDING SITE FOR RESIDUE PO4 G 154
02AC2SOFTWAREARG J:50 , ASP K:96 , HIS K:97 , HIS K:100BINDING SITE FOR RESIDUE PO4 K 154
03AC3SOFTWAREARG B:50 , HIS C:97 , HIS C:100BINDING SITE FOR RESIDUE PO4 C 154
04AC4SOFTWARELEU A:52 , PHE A:53 , ARG A:55 , VAL A:56 , ARG A:72 , HIS A:101 , ARG A:104 , TYR A:111 , PHE A:112 , PHE A:139 , CMO A:1161 , HOH A:1162 , HIS D:89 , GLN D:93BINDING SITE FOR RESIDUE HEM A 160
05AC5SOFTWAREPHE A:39 , PHE A:53 , HIS A:69 , VAL A:73 , HEM A:160BINDING SITE FOR RESIDUE CMO A 1161
06AC6SOFTWARELEU B:47 , PHE B:48 , ARG B:50 , ARG B:67 , LEU B:92 , GLN B:95 , HIS B:96 , ARG B:99 , ILE B:101 , PHE B:109 , GLU B:138 , CMO B:1162 , HOH B:1191 , HIS C:97 , GLN C:101BINDING SITE FOR RESIDUE HEM B 160
07AC7SOFTWARETRP B:34 , PHE B:48 , HIS B:64 , VAL B:68 , HEM B:160BINDING SITE FOR RESIDUE CMO B 1162
08AC8SOFTWAREHIS B:91 , GLN B:95 , LEU C:53 , PHE C:54 , ARG C:56 , VAL C:57 , ARG C:73 , ILE C:74 , GLY C:77 , LEU C:78 , LEU C:98 , GLN C:101 , HIS C:102 , ARG C:105 , VAL C:108 , HIS C:112 , PHE C:113 , PHE C:116 , LEU C:144 , CMO C:1163 , HOH C:1171 , HOH C:1178BINDING SITE FOR RESIDUE HEM C 160
09AC9SOFTWARELEU C:40 , HIS C:70 , ILE C:74 , HEM C:160BINDING SITE FOR RESIDUE CMO C 1163
10BC1SOFTWAREHIS A:96 , GLN A:100 , PRO D:45 , PHE D:46 , ARG D:48 , VAL D:49 , HIS D:62 , ARG D:65 , LEU D:90 , GLN D:93 , HIS D:94 , ARG D:97 , LEU D:99 , PHE D:103 , PHE D:104 , PHE D:107 , ILE D:136 , CMO D:1164 , HOH D:1170 , HOH D:1177BINDING SITE FOR RESIDUE HEM D 160
11BC2SOFTWARETRP D:32 , PHE D:46 , HIS D:62 , VAL D:66 , HEM D:160BINDING SITE FOR RESIDUE CMO D 1164
12BC3SOFTWARELEU E:52 , PHE E:53 , ARG E:55 , VAL E:56 , ARG E:72 , HIS E:101 , ARG E:104 , TYR E:111 , PHE E:112 , PHE E:139 , CMO E:2161 , HOH E:2166 , HIS H:89 , GLN H:93BINDING SITE FOR RESIDUE HEM E 160
13BC4SOFTWAREPHE E:39 , PHE E:53 , HIS E:69 , VAL E:73 , HEM E:160BINDING SITE FOR RESIDUE CMO E 2161
14BC5SOFTWARELEU F:47 , PHE F:48 , ARG F:50 , ARG F:67 , LEU F:72 , GLN F:95 , HIS F:96 , ARG F:99 , ILE F:101 , PHE F:106 , PHE F:109 , GLU F:138 , ILE F:141 , CMO F:2162 , HOH F:2164 , HIS G:97 , GLN G:101BINDING SITE FOR RESIDUE HEM F 160
15BC6SOFTWARETRP F:34 , PHE F:48 , HIS F:64 , VAL F:68 , HEM F:160BINDING SITE FOR RESIDUE CMO F 2162
16BC7SOFTWAREHIS F:91 , GLN F:95 , LEU G:53 , PHE G:54 , ARG G:56 , VAL G:57 , ARG G:73 , GLY G:77 , LEU G:78 , LEU G:98 , GLN G:101 , HIS G:102 , ARG G:105 , VAL G:108 , HIS G:112 , PHE G:113 , PHE G:116 , LEU G:144 , CMO G:2163 , HOH G:2168BINDING SITE FOR RESIDUE HEM G 160
17BC8SOFTWARELEU G:40 , PHE G:54 , HIS G:70 , ILE G:74 , HEM G:160BINDING SITE FOR RESIDUE CMO G 2163
18BC9SOFTWAREHOH A:1170 , HIS E:96 , GLN E:100 , PRO H:45 , PHE H:46 , ARG H:48 , VAL H:49 , HIS H:62 , ARG H:65 , LEU H:70 , LEU H:90 , GLN H:93 , HIS H:94 , ARG H:97 , LEU H:99 , PHE H:103 , PHE H:104 , PHE H:107 , ILE H:136 , CMO H:2164BINDING SITE FOR RESIDUE HEM H 160
19CC1SOFTWARETRP H:32 , PHE H:46 , HIS H:62 , VAL H:66 , HEM H:160BINDING SITE FOR RESIDUE CMO H 2164
20CC2SOFTWARELEU I:52 , PHE I:53 , ARG I:55 , VAL I:56 , ARG I:72 , HIS I:101 , ARG I:104 , TYR I:111 , PHE I:112 , PHE I:139 , CMO I:3161 , HOH I:3179 , HOH I:3192 , HIS L:89 , GLN L:93BINDING SITE FOR RESIDUE HEM I 160
21CC3SOFTWAREPHE I:39 , PHE I:53 , HIS I:69 , VAL I:73 , HEM I:160BINDING SITE FOR RESIDUE CMO I 3161
22CC4SOFTWARELEU J:47 , PHE J:48 , ARG J:50 , ARG J:67 , LEU J:72 , GLN J:95 , HIS J:96 , ARG J:99 , ILE J:101 , PHE J:109 , GLU J:138 , ILE J:141 , CMO J:3162 , HIS K:97 , GLN K:101BINDING SITE FOR RESIDUE HEM J 160
23CC5SOFTWARETRP J:34 , PHE J:48 , HIS J:64 , VAL J:68 , HEM J:160BINDING SITE FOR RESIDUE CMO J 3162
24CC6SOFTWAREHIS J:91 , GLN J:95 , LEU K:53 , PHE K:54 , ARG K:56 , VAL K:57 , ARG K:73 , GLY K:77 , LEU K:78 , LEU K:98 , GLN K:101 , HIS K:102 , ARG K:105 , VAL K:108 , HIS K:112 , PHE K:113 , PHE K:116 , LEU K:144 , CMO K:3163BINDING SITE FOR RESIDUE HEM K 160
25CC7SOFTWARELEU K:40 , HIS K:70 , ILE K:74 , HEM K:160BINDING SITE FOR RESIDUE CMO K 3163
26CC8SOFTWAREHIS I:96 , GLN I:100 , PRO L:45 , PHE L:46 , ARG L:48 , VAL L:49 , HIS L:62 , ARG L:65 , LEU L:70 , LEU L:90 , GLN L:93 , HIS L:94 , ARG L:97 , LEU L:99 , PHE L:103 , PHE L:104 , PHE L:107 , ILE L:136 , CMO L:3164 , HOH L:3181BINDING SITE FOR RESIDUE HEM L 160
27CC9SOFTWARETRP L:32 , PHE L:46 , HIS L:62 , VAL L:66 , HEM L:160BINDING SITE FOR RESIDUE CMO L 3164

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:6 -G:6
2A:7 -A:138
3A:129 -B:124
4B:4 -B:133
5C:6 -I:6
6C:7 -C:139
7D:2 -D:131
8E:6 -K:6
9E:7 -E:138
10F:4 -F:133
11G:7 -G:139
12H:2 -H:131
13I:7 -I:138
14I:129 -J:124
15J:4 -J:133
16K:7 -K:139
17L:2 -L:131

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X9F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X9F)

(-) PROSITE Motifs  (1, 9)

Asymmetric/Biological Unit (1, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLOBINPS01033 Globin family profile.GLB2_LUMTE8-137
 
 		  3B:8-137
F:8-137
J:8-137
GLB4_LUMTE10-139
 
 		  3A:10-139
E:10-139
I:10-139
GLB3_LUMTE56-160
 
 		  3C:39-143
G:39-143
K:39-143

(-) Exons   (0, 0)

(no "Exon" information available for 1X9F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with GLB4_LUMTE | P13579 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           GLB4_LUMTE     5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLDLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
               SCOP domains d1x9fa_ A: Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A)                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----GLOBIN  PDB: A:10-139 UniProt: 10-139                                                                                             ------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f A   5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       


Chain B from PDB  Type:PROTEIN  Length:145
 aligned with GLB2_LUMTE | P02218 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
           GLB2_LUMTE     1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHAERVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
               SCOP domains d1x9fb_ B: Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B)                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------GLOBIN  PDB: B:8-137 UniProt: 8-137                                                                                               -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f B   1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     


Chain C from PDB  Type:PROTEIN  Length:149
 aligned with GLB3_LUMTE | P11069 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:149
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159         
           GLB3_LUMTE    20 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPDVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 168
               SCOP domains d1x9fc_ C: Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C)                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------GLOBIN  PDB: C:39-143 UniProt: 56-160                                                                    -------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f C   3 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         


Chain D from PDB  Type:PROTEIN  Length:140
 aligned with O61233_LUMTE | O61233 from UniProtKB/TrEMBL  Length:158

    Alignment length:140
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158
         O61233_LUMTE    19 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 158
               SCOP domains d1x9fd_ D: Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f D   1 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain E from PDB  Type:PROTEIN  Length:147
 aligned with GLB4_LUMTE | P13579 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           GLB4_LUMTE     5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLDLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
               SCOP domains d1x9fe_ E: Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A)                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----GLOBIN  PDB: E:10-139 UniProt: 10-139                                                                                             ------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f E   5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       


Chain F from PDB  Type:PROTEIN  Length:145
 aligned with GLB2_LUMTE | P02218 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
           GLB2_LUMTE     1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHAERVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
               SCOP domains d1x9ff_ F: Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B)                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------GLOBIN  PDB: F:8-137 UniProt: 8-137                                                                                               -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f F   1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     


Chain G from PDB  Type:PROTEIN  Length:149
 aligned with GLB3_LUMTE | P11069 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:149
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159         
           GLB3_LUMTE    20 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPDVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 168
               SCOP domains d1x9fg_ G: Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C)                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------GLOBIN  PDB: G:39-143 UniProt: 56-160                                                                    -------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f G   3 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         


Chain H from PDB  Type:PROTEIN  Length:140
 aligned with O61233_LUMTE | O61233 from UniProtKB/TrEMBL  Length:158

    Alignment length:140
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158
         O61233_LUMTE    19 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 158
               SCOP domains d1x9fh_ H: Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f H   1 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain I from PDB  Type:PROTEIN  Length:147
 aligned with GLB4_LUMTE | P13579 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           GLB4_LUMTE     5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLDLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
               SCOP domains d1x9fi_ I: Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A)                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Globin-1x9fI01 I:11-120                                                                                       ------------------------------- Pfam domains (1)
           Pfam domains (2) ------Globin-1x9fI02 I:11-120                                                                                       ------------------------------- Pfam domains (2)
           Pfam domains (3) ------Globin-1x9fI03 I:11-120                                                                                       ------------------------------- Pfam domains (3)
         Sec.struct. author ...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----GLOBIN  PDB: I:10-139 UniProt: 10-139                                                                                             ------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f I   5 DCCSYEDRREIRHIWDDVWSSSFTDRRVAIVRAVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQVLSCFNVDAWNRCFHRLVARIAKDLP 151
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       


Chain J from PDB  Type:PROTEIN  Length:145
 aligned with GLB2_LUMTE | P02218 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
           GLB2_LUMTE     1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHAERVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
               SCOP domains d1x9fj_ J: Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B)                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Globin-1x9fJ01 J:8-114                                                                                     ------------------------------- Pfam domains (1)
           Pfam domains (2) -------Globin-1x9fJ02 J:8-114                                                                                     ------------------------------- Pfam domains (2)
           Pfam domains (3) -------Globin-1x9fJ03 J:8-114                                                                                     ------------------------------- Pfam domains (3)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------GLOBIN  PDB: J:8-137 UniProt: 8-137                                                                                               -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f J   1 KKQCGVLEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACIDHIEDGIKGHH 145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     


Chain K from PDB  Type:PROTEIN  Length:149
 aligned with GLB3_LUMTE | P11069 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:149
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159         
           GLB3_LUMTE    20 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPDVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 168
               SCOP domains d1x9fk_ K: Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C)                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Globin-1x9fK01 K:11-121                                                                                        ------------------------------ Pfam domains (1)
           Pfam domains (2) --------Globin-1x9fK02 K:11-121                                                                                        ------------------------------ Pfam domains (2)
           Pfam domains (3) --------Globin-1x9fK03 K:11-121                                                                                        ------------------------------ Pfam domains (3)
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------GLOBIN  PDB: K:39-143 UniProt: 56-160                                                                    -------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f K   3 HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRL 151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         


Chain L from PDB  Type:PROTEIN  Length:140
 aligned with O61233_LUMTE | O61233 from UniProtKB/TrEMBL  Length:158

    Alignment length:140
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158
         O61233_LUMTE    19 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 158
               SCOP domains d1x9fl_ L: Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Globin-1x9fL01 L:6-112                                                                                     ---------------------------- Pfam domains (1)
           Pfam domains (2) -----Globin-1x9fL02 L:6-112                                                                                     ---------------------------- Pfam domains (2)
           Pfam domains (3) -----Globin-1x9fL03 L:6-112                                                                                     ---------------------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x9f L   1 ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X9F)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Globin (291)

(-) Gene Ontology  (9, 36)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,E,I   (GLB4_LUMTE | P13579)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain B,F,J   (GLB2_LUMTE | P02218)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain C,G,K   (GLB3_LUMTE | P11069)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain D,H,L   (O61233_LUMTE | O61233)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

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  1x9f
    Family and Domain Information: ProDom | SYSTERS
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  GLB2_LUMTE | P02218
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  GLB3_LUMTE | P11069
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  GLB4_LUMTE | P13579
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  O61233_LUMTE | O61233
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLB2_LUMTE | P02218: 2gtl 4v93
        GLB3_LUMTE | P11069: 2gtl 4v93
        GLB4_LUMTE | P13579: 2gtl 4v93
UniProtKB/TrEMBL
        O61233_LUMTE | O61233: 2gtl 4v93

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1X9F)