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Sequence, Chains, Asymmetric and Biological Units

Title HEMOGLOBIN DODECAMER FROM LUMBRICUS ERYTHROCRUORIN
Keywords CRYSTAL; DODECAMER; ALLOSTERIC, OXYGEN STORAGE-TRANSPORT COM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1X9F     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLOBIN IV, EXTRACELLULAR  A 147 1209 0
2  Protein   GLOBIN II, EXTRACELLULAR  B 145 1148 0
3  Protein   GLOBIN III, EXTRACELLULAR  C 149 1190 0
4  Protein   HEMOGLOBIN CHAIN D1  D 140 1129 0
5  Protein   GLOBIN IV, EXTRACELLULAR  E 147 1209 0
6  Protein   GLOBIN II, EXTRACELLULAR  F 145 1148 0
7  Protein   GLOBIN III, EXTRACELLULAR  G 149 1190 0
8  Protein   HEMOGLOBIN CHAIN D1  H 140 1129 0
9  Protein   GLOBIN IV, EXTRACELLULAR  I 147 1209 0
10  Protein   GLOBIN II, EXTRACELLULAR  J 145 1148 0
11  Protein   GLOBIN III, EXTRACELLULAR  K 149 1190 0
12  Protein   HEMOGLOBIN CHAIN D1  L 140 1129 0
13  Ligand   GLOBIN IV, EXTRACELLULAR  A 2 0 45
14  Ligand   GLOBIN II, EXTRACELLULAR  B 2 0 45
15  Ligand   GLOBIN III, EXTRACELLULAR  C 3 0 50
16  Ligand   HEMOGLOBIN CHAIN D1  D 2 0 45
17  Ligand   GLOBIN IV, EXTRACELLULAR  E 2 0 45
18  Ligand   GLOBIN II, EXTRACELLULAR  F 2 0 45
19  Ligand   GLOBIN III, EXTRACELLULAR  G 3 0 50
20  Ligand   HEMOGLOBIN CHAIN D1  H 2 0 45
21  Ligand   GLOBIN IV, EXTRACELLULAR  I 2 0 45
22  Ligand   GLOBIN II, EXTRACELLULAR  J 2 0 45
23  Ligand   GLOBIN III, EXTRACELLULAR  K 3 0 50
24  Ligand   HEMOGLOBIN CHAIN D1  L 2 0 45
25 Water     264 0 264
total       2034 14028 819

Proteins
Unit 1 ASP5 CYS6 CYS7 SER8 TYR9 GLU10 ASP11 ARG12 ARG13 GLU14 ILE15 ARG16 HIS17 ILE18 TRP19 ASP20 ASP21 VAL22 TRP23 SER24 SER25 SER26 PHE27 THR28 ASP29 ARG30 ARG31 VAL32 ALA33 ILE34 VAL35 ARG36 ALA37 VAL38 PHE39 ASP40 ASP41 LEU42 PHE43 LYS44 HIS45 TYR46 PRO47 THR48 SER49 LYS50 ALA51 LEU52 PHE53 GLU54 ARG55 VAL56 LYS57 ILE58 ASP59 GLU60 PRO61 GLU62 SER63 GLY64 GLU65 PHE66 LYS67 SER68 HIS69 LEU70 VAL71 ARG72 VAL73 ALA74 ASN75 GLY76 LEU77 LYS78 LEU79 LEU80 ILE81 ASN82 LEU83 LEU84 ASP85 ASP86 THR87 LEU88 VAL89 LEU90 GLN91 SER92 HIS93 LEU94 GLY95 HIS96 LEU97 ALA98 ASP99 GLN100 HIS101 ILE102 GLN103 ARG104 LYS105 GLY106 VAL107 THR108 LYS109 GLU110 TYR111 PHE112 ARG113 GLY114 ILE115 GLY116 GLU117 ALA118 PHE119 ALA120 ARG121 VAL122 LEU123 PRO124 GLN125 VAL126 LEU127 SER128 CYS129 PHE130 ASN131 VAL132 ASP133 ALA134 TRP135 ASN136 ARG137 CYS138 PHE139 HIS140 ARG141 LEU142 VAL143 ALA144 ARG145 ILE146 ALA147 LYS148 ASP149 LEU150 PRO151
Unit 2 LYS1 LYS2 GLN3 CYS4 GLY5 VAL6 LEU7 GLU8 GLY9 LEU10 LYS11 VAL12 LYS13 SER14 GLU15 TRP16 GLY17 ARG18 ALA19 TYR20 GLY21 SER22 GLY23 HIS24 ASP25 ARG26 GLU27 ALA28 PHE29 SER30 GLN31 ALA32 ILE33 TRP34 ARG35 ALA36 THR37 PHE38 ALA39 GLN40 VAL41 PRO42 GLU43 SER44 ARG45 SER46 LEU47 PHE48 LYS49 ARG50 VAL51 HIS52 GLY53 ASP54 ASP55 THR56 SER57 HIS58 PRO59 ALA60 PHE61 ILE62 ALA63 HIS64 ALA65 ASP66 ARG67 VAL68 LEU69 GLY70 GLY71 LEU72 ASP73 ILE74 ALA75 ILE76 SER77 THR78 LEU79 ASP80 GLN81 PRO82 ALA83 THR84 LEU85 LYS86 GLU87 GLU88 LEU89 ASP90 HIS91 LEU92 GLN93 VAL94 GLN95 HIS96 GLU97 GLY98 ARG99 LYS100 ILE101 PRO102 ASP103 ASN104 TYR105 PHE106 ASP107 ALA108 PHE109 LYS110 THR111 ALA112 ILE113 LEU114 HIS115 VAL116 VAL117 ALA118 ALA119 GLN120 LEU121 GLY122 ARG123 CYS124 TYR125 ASP126 ARG127 GLU128 ALA129 TRP130 ASP131 ALA132 CYS133 ILE134 ASP135 HIS136 ILE137 GLU138 ASP139 GLY140 ILE141 LYS142 GLY143 HIS144 HIS145
Unit 3 HIS3 GLU4 HIS5 CYS6 CYS7 SER8 GLU9 GLU10 ASP11 HIS12 ARG13 ILE14 VAL15 GLN16 LYS17 GLN18 TRP19 ASP20 ILE21 LEU22 TRP23 ARG24 ASP25 THR26 GLU27 SER28 SER29 LYS30 ILE31 LYS32 ILE33 GLY34 PHE35 GLY36 ARG37 LEU38 LEU39 LEU40 THR41 LYS42 LEU43 ALA44 LYS45 ASP46 ILE47 PRO48 GLU49 VAL50 ASN51 ASP52 LEU53 PHE54 LYS55 ARG56 VAL57 ASP58 ILE59 GLU60 HIS61 ALA62 GLU63 GLY64 PRO65 LYS66 PHE67 SER68 ALA69 HIS70 ALA71 LEU72 ARG73 ILE74 LEU75 ASN76 GLY77 LEU78 ASP79 LEU80 ALA81 ILE82 ASN83 LEU84 LEU85 ASP86 ASP87 PRO88 PRO89 ALA90 LEU91 ASP92 ALA93 ALA94 LEU95 ASP96 HIS97 LEU98 ALA99 HIS100 GLN101 HIS102 GLU103 VAL104 ARG105 GLU106 GLY107 VAL108 GLN109 LYS110 ALA111 HIS112 PHE113 LYS114 LYS115 PHE116 GLY117 GLU118 ILE119 LEU120 ALA121 THR122 GLY123 LEU124 PRO125 GLN126 VAL127 LEU128 ASP129 ASP130 TYR131 ASP132 ALA133 LEU134 ALA135 TRP136 LYS137 SER138 CYS139 LEU140 LYS141 GLY142 ILE143 LEU144 THR145 LYS146 ILE147 SER148 SER149 ARG150 LEU151
Unit 4 GLU1 CYS2 LEU3 VAL4 THR5 GLU6 SER7 LEU8 LYS9 VAL10 LYS11 LEU12 GLN13 TRP14 ALA15 SER16 ALA17 PHE18 GLY19 HIS20 ALA21 HIS22 GLU23 ARG24 VAL25 ALA26 PHE27 GLY28 LEU29 GLU30 LEU31 TRP32 ARG33 ASP34 ILE35 ILE36 ASP37 ASP38 HIS39 PRO40 GLU41 ILE42 LYS43 ALA44 PRO45 PHE46 SER47 ARG48 VAL49 ARG50 GLY51 ASP52 ASN53 ILE54 TYR55 SER56 PRO57 GLU58 PHE59 GLY60 ALA61 HIS62 SER63 GLN64 ARG65 VAL66 LEU67 SER68 GLY69 LEU70 ASP71 ILE72 THR73 ILE74 SER75 MET76 LEU77 ASP78 THR79 PRO80 ASP81 MET82 LEU83 ALA84 ALA85 GLN86 LEU87 ALA88 HIS89 LEU90 LYS91 VAL92 GLN93 HIS94 VAL95 GLU96 ARG97 ASN98 LEU99 LYS100 PRO101 GLU102 PHE103 PHE104 ASP105 ILE106 PHE107 LEU108 LYS109 HIS110 LEU111 LEU112 HIS113 VAL114 LEU115 GLY116 ASP117 ARG118 LEU119 GLY120 THR121 HIS122 PHE123 ASP124 PHE125 GLY126 ALA127 TRP128 HIS129 ASP130 CYS131 VAL132 ASP133 GLN134 ILE135 ILE136 ASP137 GLY138 ILE139 LYS140
Unit 5 ASP5 CYS6 CYS7 SER8 TYR9 GLU10 ASP11 ARG12 ARG13 GLU14 ILE15 ARG16 HIS17 ILE18 TRP19 ASP20 ASP21 VAL22 TRP23 SER24 SER25 SER26 PHE27 THR28 ASP29 ARG30 ARG31 VAL32 ALA33 ILE34 VAL35 ARG36 ALA37 VAL38 PHE39 ASP40 ASP41 LEU42 PHE43 LYS44 HIS45 TYR46 PRO47 THR48 SER49 LYS50 ALA51 LEU52 PHE53 GLU54 ARG55 VAL56 LYS57 ILE58 ASP59 GLU60 PRO61 GLU62 SER63 GLY64 GLU65 PHE66 LYS67 SER68 HIS69 LEU70 VAL71 ARG72 VAL73 ALA74 ASN75 GLY76 LEU77 LYS78 LEU79 LEU80 ILE81 ASN82 LEU83 LEU84 ASP85 ASP86 THR87 LEU88 VAL89 LEU90 GLN91 SER92 HIS93 LEU94 GLY95 HIS96 LEU97 ALA98 ASP99 GLN100 HIS101 ILE102 GLN103 ARG104 LYS105 GLY106 VAL107 THR108 LYS109 GLU110 TYR111 PHE112 ARG113 GLY114 ILE115 GLY116 GLU117 ALA118 PHE119 ALA120 ARG121 VAL122 LEU123 PRO124 GLN125 VAL126 LEU127 SER128 CYS129 PHE130 ASN131 VAL132 ASP133 ALA134 TRP135 ASN136 ARG137 CYS138 PHE139 HIS140 ARG141 LEU142 VAL143 ALA144 ARG145 ILE146 ALA147 LYS148 ASP149 LEU150 PRO151
Unit 6 LYS1 LYS2 GLN3 CYS4 GLY5 VAL6 LEU7 GLU8 GLY9 LEU10 LYS11 VAL12 LYS13 SER14 GLU15 TRP16 GLY17 ARG18 ALA19 TYR20 GLY21 SER22 GLY23 HIS24 ASP25 ARG26 GLU27 ALA28 PHE29 SER30 GLN31 ALA32 ILE33 TRP34 ARG35 ALA36 THR37 PHE38 ALA39 GLN40 VAL41 PRO42 GLU43 SER44 ARG45 SER46 LEU47 PHE48 LYS49 ARG50 VAL51 HIS52 GLY53 ASP54 ASP55 THR56 SER57 HIS58 PRO59 ALA60 PHE61 ILE62 ALA63 HIS64 ALA65 ASP66 ARG67 VAL68 LEU69 GLY70 GLY71 LEU72 ASP73 ILE74 ALA75 ILE76 SER77 THR78 LEU79 ASP80 GLN81 PRO82 ALA83 THR84 LEU85 LYS86 GLU87 GLU88 LEU89 ASP90 HIS91 LEU92 GLN93 VAL94 GLN95 HIS96 GLU97 GLY98 ARG99 LYS100 ILE101 PRO102 ASP103 ASN104 TYR105 PHE106 ASP107 ALA108 PHE109 LYS110 THR111 ALA112 ILE113 LEU114 HIS115 VAL116 VAL117 ALA118 ALA119 GLN120 LEU121 GLY122 ARG123 CYS124 TYR125 ASP126 ARG127 GLU128 ALA129 TRP130 ASP131 ALA132 CYS133 ILE134 ASP135 HIS136 ILE137 GLU138 ASP139 GLY140 ILE141 LYS142 GLY143 HIS144 HIS145
Unit 7 HIS3 GLU4 HIS5 CYS6 CYS7 SER8 GLU9 GLU10 ASP11 HIS12 ARG13 ILE14 VAL15 GLN16 LYS17 GLN18 TRP19 ASP20 ILE21 LEU22 TRP23 ARG24 ASP25 THR26 GLU27 SER28 SER29 LYS30 ILE31 LYS32 ILE33 GLY34 PHE35 GLY36 ARG37 LEU38 LEU39 LEU40 THR41 LYS42 LEU43 ALA44 LYS45 ASP46 ILE47 PRO48 GLU49 VAL50 ASN51 ASP52 LEU53 PHE54 LYS55 ARG56 VAL57 ASP58 ILE59 GLU60 HIS61 ALA62 GLU63 GLY64 PRO65 LYS66 PHE67 SER68 ALA69 HIS70 ALA71 LEU72 ARG73 ILE74 LEU75 ASN76 GLY77 LEU78 ASP79 LEU80 ALA81 ILE82 ASN83 LEU84 LEU85 ASP86 ASP87 PRO88 PRO89 ALA90 LEU91 ASP92 ALA93 ALA94 LEU95 ASP96 HIS97 LEU98 ALA99 HIS100 GLN101 HIS102 GLU103 VAL104 ARG105 GLU106 GLY107 VAL108 GLN109 LYS110 ALA111 HIS112 PHE113 LYS114 LYS115 PHE116 GLY117 GLU118 ILE119 LEU120 ALA121 THR122 GLY123 LEU124 PRO125 GLN126 VAL127 LEU128 ASP129 ASP130 TYR131 ASP132 ALA133 LEU134 ALA135 TRP136 LYS137 SER138 CYS139 LEU140 LYS141 GLY142 ILE143 LEU144 THR145 LYS146 ILE147 SER148 SER149 ARG150 LEU151
Unit 8 GLU1 CYS2 LEU3 VAL4 THR5 GLU6 SER7 LEU8 LYS9 VAL10 LYS11 LEU12 GLN13 TRP14 ALA15 SER16 ALA17 PHE18 GLY19 HIS20 ALA21 HIS22 GLU23 ARG24 VAL25 ALA26 PHE27 GLY28 LEU29 GLU30 LEU31 TRP32 ARG33 ASP34 ILE35 ILE36 ASP37 ASP38 HIS39 PRO40 GLU41 ILE42 LYS43 ALA44 PRO45 PHE46 SER47 ARG48 VAL49 ARG50 GLY51 ASP52 ASN53 ILE54 TYR55 SER56 PRO57 GLU58 PHE59 GLY60 ALA61 HIS62 SER63 GLN64 ARG65 VAL66 LEU67 SER68 GLY69 LEU70 ASP71 ILE72 THR73 ILE74 SER75 MET76 LEU77 ASP78 THR79 PRO80 ASP81 MET82 LEU83 ALA84 ALA85 GLN86 LEU87 ALA88 HIS89 LEU90 LYS91 VAL92 GLN93 HIS94 VAL95 GLU96 ARG97 ASN98 LEU99 LYS100 PRO101 GLU102 PHE103 PHE104 ASP105 ILE106 PHE107 LEU108 LYS109 HIS110 LEU111 LEU112 HIS113 VAL114 LEU115 GLY116 ASP117 ARG118 LEU119 GLY120 THR121 HIS122 PHE123 ASP124 PHE125 GLY126 ALA127 TRP128 HIS129 ASP130 CYS131 VAL132 ASP133 GLN134 ILE135 ILE136 ASP137 GLY138 ILE139 LYS140
Unit 9 ASP5 CYS6 CYS7 SER8 TYR9 GLU10 ASP11 ARG12 ARG13 GLU14 ILE15 ARG16 HIS17 ILE18 TRP19 ASP20 ASP21 VAL22 TRP23 SER24 SER25 SER26 PHE27 THR28 ASP29 ARG30 ARG31 VAL32 ALA33 ILE34 VAL35 ARG36 ALA37 VAL38 PHE39 ASP40 ASP41 LEU42 PHE43 LYS44 HIS45 TYR46 PRO47 THR48 SER49 LYS50 ALA51 LEU52 PHE53 GLU54 ARG55 VAL56 LYS57 ILE58 ASP59 GLU60 PRO61 GLU62 SER63 GLY64 GLU65 PHE66 LYS67 SER68 HIS69 LEU70 VAL71 ARG72 VAL73 ALA74 ASN75 GLY76 LEU77 LYS78 LEU79 LEU80 ILE81 ASN82 LEU83 LEU84 ASP85 ASP86 THR87 LEU88 VAL89 LEU90 GLN91 SER92 HIS93 LEU94 GLY95 HIS96 LEU97 ALA98 ASP99 GLN100 HIS101 ILE102 GLN103 ARG104 LYS105 GLY106 VAL107 THR108 LYS109 GLU110 TYR111 PHE112 ARG113 GLY114 ILE115 GLY116 GLU117 ALA118 PHE119 ALA120 ARG121 VAL122 LEU123 PRO124 GLN125 VAL126 LEU127 SER128 CYS129 PHE130 ASN131 VAL132 ASP133 ALA134 TRP135 ASN136 ARG137 CYS138 PHE139 HIS140 ARG141 LEU142 VAL143 ALA144 ARG145 ILE146 ALA147 LYS148 ASP149 LEU150 PRO151
Unit 10 LYS1 LYS2 GLN3 CYS4 GLY5 VAL6 LEU7 GLU8 GLY9 LEU10 LYS11 VAL12 LYS13 SER14 GLU15 TRP16 GLY17 ARG18 ALA19 TYR20 GLY21 SER22 GLY23 HIS24 ASP25 ARG26 GLU27 ALA28 PHE29 SER30 GLN31 ALA32 ILE33 TRP34 ARG35 ALA36 THR37 PHE38 ALA39 GLN40 VAL41 PRO42 GLU43 SER44 ARG45 SER46 LEU47 PHE48 LYS49 ARG50 VAL51 HIS52 GLY53 ASP54 ASP55 THR56 SER57 HIS58 PRO59 ALA60 PHE61 ILE62 ALA63 HIS64 ALA65 ASP66 ARG67 VAL68 LEU69 GLY70 GLY71 LEU72 ASP73 ILE74 ALA75 ILE76 SER77 THR78 LEU79 ASP80 GLN81 PRO82 ALA83 THR84 LEU85 LYS86 GLU87 GLU88 LEU89 ASP90 HIS91 LEU92 GLN93 VAL94 GLN95 HIS96 GLU97 GLY98 ARG99 LYS100 ILE101 PRO102 ASP103 ASN104 TYR105 PHE106 ASP107 ALA108 PHE109 LYS110 THR111 ALA112 ILE113 LEU114 HIS115 VAL116 VAL117 ALA118 ALA119 GLN120 LEU121 GLY122 ARG123 CYS124 TYR125 ASP126 ARG127 GLU128 ALA129 TRP130 ASP131 ALA132 CYS133 ILE134 ASP135 HIS136 ILE137 GLU138 ASP139 GLY140 ILE141 LYS142 GLY143 HIS144 HIS145
Unit 11 HIS3 GLU4 HIS5 CYS6 CYS7 SER8 GLU9 GLU10 ASP11 HIS12 ARG13 ILE14 VAL15 GLN16 LYS17 GLN18 TRP19 ASP20 ILE21 LEU22 TRP23 ARG24 ASP25 THR26 GLU27 SER28 SER29 LYS30 ILE31 LYS32 ILE33 GLY34 PHE35 GLY36 ARG37 LEU38 LEU39 LEU40 THR41 LYS42 LEU43 ALA44 LYS45 ASP46 ILE47 PRO48 GLU49 VAL50 ASN51 ASP52 LEU53 PHE54 LYS55 ARG56 VAL57 ASP58 ILE59 GLU60 HIS61 ALA62 GLU63 GLY64 PRO65 LYS66 PHE67 SER68 ALA69 HIS70 ALA71 LEU72 ARG73 ILE74 LEU75 ASN76 GLY77 LEU78 ASP79 LEU80 ALA81 ILE82 ASN83 LEU84 LEU85 ASP86 ASP87 PRO88 PRO89 ALA90 LEU91 ASP92 ALA93 ALA94 LEU95 ASP96 HIS97 LEU98 ALA99 HIS100 GLN101 HIS102 GLU103 VAL104 ARG105 GLU106 GLY107 VAL108 GLN109 LYS110 ALA111 HIS112 PHE113 LYS114 LYS115 PHE116 GLY117 GLU118 ILE119 LEU120 ALA121 THR122 GLY123 LEU124 PRO125 GLN126 VAL127 LEU128 ASP129 ASP130 TYR131 ASP132 ALA133 LEU134 ALA135 TRP136 LYS137 SER138 CYS139 LEU140 LYS141 GLY142 ILE143 LEU144 THR145 LYS146 ILE147 SER148 SER149 ARG150 LEU151
Unit 12 GLU1 CYS2 LEU3 VAL4 THR5 GLU6 SER7 LEU8 LYS9 VAL10 LYS11 LEU12 GLN13 TRP14 ALA15 SER16 ALA17 PHE18 GLY19 HIS20 ALA21 HIS22 GLU23 ARG24 VAL25 ALA26 PHE27 GLY28 LEU29 GLU30 LEU31 TRP32 ARG33 ASP34 ILE35 ILE36 ASP37 ASP38 HIS39 PRO40 GLU41 ILE42 LYS43 ALA44 PRO45 PHE46 SER47 ARG48 VAL49 ARG50 GLY51 ASP52 ASN53 ILE54 TYR55 SER56 PRO57 GLU58 PHE59 GLY60 ALA61 HIS62 SER63 GLN64 ARG65 VAL66 LEU67 SER68 GLY69 LEU70 ASP71 ILE72 THR73 ILE74 SER75 MET76 LEU77 ASP78 THR79 PRO80 ASP81 MET82 LEU83 ALA84 ALA85 GLN86 LEU87 ALA88 HIS89 LEU90 LYS91 VAL92 GLN93 HIS94 VAL95 GLU96 ARG97 ASN98 LEU99 LYS100 PRO101 GLU102 PHE103 PHE104 ASP105 ILE106 PHE107 LEU108 LYS109 HIS110 LEU111 LEU112 HIS113 VAL114 LEU115 GLY116 ASP117 ARG118 LEU119 GLY120 THR121 HIS122 PHE123 ASP124 PHE125 GLY126 ALA127 TRP128 HIS129 ASP130 CYS131 VAL132 ASP133 GLN134 ILE135 ILE136 ASP137 GLY138 ILE139 LYS140

Ligands
Unit 13 HEM160 CMO1161
Unit 14 HEM160 CMO1162
Unit 15 PO4154 HEM160 CMO1163
Unit 16 HEM160 CMO1164
Unit 17 HEM160 CMO2161
Unit 18 HEM160 CMO2162
Unit 19 PO4154 HEM160 CMO2163
Unit 20 HEM160 CMO2164
Unit 21 HEM160 CMO3161
Unit 22 HEM160 CMO3162
Unit 23 PO4154 HEM160 CMO3163
Unit 24 HEM160 CMO3164

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany