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(-) Description

Title :  SOLUTION STRUCTURE OF THE LIM DOMAIN OF ALPHA-ACTININ-2 ASSOCIATED LIM PROTEIN
 
Authors :  X. R. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  17 May 05  (Deposition) - 17 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Lim Domain, Alpha-Actinin-2 Associated Lim Protein, Pdz And Lim Domain 3, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. R. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Lim Domain Of Alpha-Actinin-2 Associated Lim Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALPHA-ACTININ-2 ASSOCIATED LIM PROTEIN
    Chains: A
    Engineered: YES
    Expression System Vector Type: PLASMID
    Fragment: LIM DOMAIN
    Gene: RIKEN CDNA 6720456D19
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:28 , CYS A:31 , HIS A:48 , CYS A:51BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:54 , CYS A:57 , CYS A:75 , HIS A:78BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X64)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X64)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X64)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIM_DOMAIN_2PS50023 LIM domain profile.PDLI3_MOUSE244-303  1A:26-86
2LIM_DOMAIN_1PS00478 LIM zinc-binding domain signature.PDLI3_MOUSE246-279  1A:28-61

(-) Exons   (0, 0)

(no "Exon" information available for 1X64)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
 aligned with PDLI3_MOUSE | O70209 from UniProtKB/Swiss-Prot  Length:316

    Alignment length:105
                                                                                                                               303   
                                                                                                                             302 |   
                                   212       222       232       242       252       262       272       282       292       302 |   
          PDLI3_MOUSE   203 GSFRVLQDLVNDGPDDRPAGTRSVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTR-PPEG 306
               SCOP domains -----------------------d1x64a1 A:8-52                               d1x64a2 A:53-83                ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------LIM-1x64A01 A:28-82                                    ------- Pfam domains
         Sec.struct. author ..----------------.....................................ee....ee...................eee..eeehhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------LIM_DOMAIN_2  PDB: A:26-86 UniProt: 244-303                  --- PROSITE (1)
                PROSITE (2) -------------------------------------------LIM_DOMAIN_1  PDB: A:28-61        ---------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 1x64 A   1 GS----------------SGSSGVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG  89
                             |       -        |4        14        24        34        44        54        64        74        84     
                             2                3
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X64)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: LIM] (23)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (PDLI3_MOUSE | O70209)
molecular function
    GO:0008092    cytoskeletal protein binding    Interacting selectively and non-covalently with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0007015    actin filament organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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        PDLI3_MOUSE | O70209: 1v5l

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