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(-) Description

Title :  SOLUTION STRUCTURE OF RRM DOMAIN IN RNA BINDING MOTIF, SINGLE-STRANDED INTERACTING PROTEIN 2
 
Authors :  F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  14 May 05  (Deposition) - 14 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Nmr, Structural Genomics, Rrm Domain, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Rrm Domain In Rna Binding Motif, Single-Stranded Interacting Protein 2
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RNA BINDING MOTIF, SINGLE-STRANDED INTERACTING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System Plasmid: P041101-06
    Expression System Vector Type: PLASMID
    Fragment: RRM DOMAIN
    Gene: RBMS2, SCR3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL FREE PROTEIN SYNTHESIS
    Synonym: SUPPRESSOR OF CDC2 WITH RNA BINDING MOTIF 3

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X4E)

(-) Sites  (0, 0)

(no "Site" information available for 1X4E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X4E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X4E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X4E)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RBMS2_HUMAN56-129
135-220		  2A:8-79
A:80-85

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002620311ENSE00001261042chr12:56915609-56915873265RBMS2_HUMAN1-22220--
1.2ENST000002620312ENSE00001117542chr12:56956201-56956367167RBMS2_HUMAN23-78561A:1-28 (gaps)36
1.3ENST000002620313ENSE00001117543chr12:56962759-5696281759RBMS2_HUMAN78-98211A:28-4821
1.4ENST000002620314ENSE00001705217chr12:56963683-5696377492RBMS2_HUMAN98-128311A:48-7831
1.5ENST000002620315ENSE00001117546chr12:56965482-56965639158RBMS2_HUMAN129-181531A:79-85 (gaps)48
1.6ENST000002620316ENSE00000920387chr12:56974968-5697504780RBMS2_HUMAN181-208280--
1.7ENST000002620317ENSE00000920388chr12:56975183-56975292110RBMS2_HUMAN208-244370--
1.8ENST000002620318ENSE00000920389chr12:56975617-5697566347RBMS2_HUMAN245-260160--
1.9ENST000002620319ENSE00000920390chr12:56975843-5697593694RBMS2_HUMAN260-291320--
1.10ENST0000026203110ENSE00001117541chr12:56980633-5698071078RBMS2_HUMAN292-317260--
1.11ENST0000026203111ENSE00001117544chr12:56981338-56981448111RBMS2_HUMAN318-354370--
1.12ENST0000026203112ENSE00001117548chr12:56982078-5698215881RBMS2_HUMAN355-381270--
1.13ENST0000026203113ENSE00001261036chr12:56982716-5698280287RBMS2_HUMAN382-407260--
1.14ENST0000026203114ENSE00001260979chr12:56982924-569899807057RBMS2_HUMAN-00--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with RBMS2_HUMAN | Q15434 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:134
                                    52        62        72        82        92       102       112       122       132       142       152       162       172    
          RBMS2_HUMAN    43 SSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRG 176
               SCOP domains ---------------d1x4ea1 A:8-79                                                          ----------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------RRM_1-1x4eA01 A:8-74                                               ---------------------------------------------------- Pfam domains
         Sec.struct. author ......e--------eeee.......hhhhhhh......eeeeeee..........eeeeee..hhhhhhhhhhhhhh...ee....-----------------------------------------...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RRM  PDB: A:8-79 UniProt: 56-129                                          -----RRM  PDB: A:80-85 UniProt: 135-220         PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-28 (gaps)        -------------------Exon 1.4  PDB: A:48-78         Exon 1.5  PDB: A:79-85 (gaps) UniProt: 129-181   Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.3  PDB: A:28-4------------------------------------------------------------------------------ Transcript 1 (2)
                 1x4e A   1 GSSGSSG--------LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ-----------------------------------------SGPSSG  85
                                  |  -     |  12        22        32        42        52        62        72      |  -         -         -         -        81    
                                  7        8                                                                     79                                        80
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X4E)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: RRM (206)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (RBMS2_HUMAN | Q15434)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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