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Title :  SOLUTION STRUCTURE OF THE THIRD IG-LIKE DOMAIN OF MYOSIN-DINDING PROTEIN C, SLOW-TYPE
 
Authors :  X. -R. Qin, C. Kurosaki, F. Hayashi, M. Yoshida, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  13 May 05  (Deposition) - 13 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ig-Like Domain, Myosin-Binding Protein C, Slow- Type/Skeletal Muscle Slow-Isoform, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. -R. Qin, C. Kurosaki, F. Hayashi, M. Yoshida, S. Yokoyama
Solution Structure Of The Third Ig-Like Domain Of Myosin-Dinding Protein C, Slow-Type
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MYOSIN-BINDING PROTEIN C, SLOW-TYPE
    ChainsA
    EngineeredYES
    Expression System PlasmidP050125-02
    Expression System Vector TypePLASMID
    FragmentIG-LIKE DOMAIN
    GeneMYBPC1, MYBPCS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL FREE PROTEIN SYNTHESIS
    SynonymSLOW MYBP-C, C-PROTEIN, SKELETAL MUSCLE SLOW- ISOFORM

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1X44)

(-) Sites  (0, 0)

(no "Site" information available for 1X44)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X44)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X44)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X44)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1X44)

(-) Exons   (0, 0)

(no "Exon" information available for 1X44)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:103
 aligned with MYPC1_HUMAN | Q00872 from UniProtKB/Swiss-Prot  Length:1141

    Alignment length:225
                                   336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546     
          MYPC1_HUMAN   327 GDEKCSTELFVREPPIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDLKPLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVHKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVIDPPKIILDGLDADNTVTVIAGNKLRLEIPISG 551
               SCOP domains ---------------d1x44a1 A:8-97 Myosin-binding protein C, slow-type                                        ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......--------..........eeee..eeeeeeee........eeee..ee........eeeeee..eeeeeeeee......eeeeee..eeeeeeeeee..-----------------------------------------------------------------------------------------------------------..-------.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x44 A   1 GSSGSS--------GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDLK-----------------------------------------------------------------------------------------------------------SG-------PSSG 103
                                 |   -    |   12        22        32        42        52        62        72        82        92    |    -         -         -         -         -         -         -         -         -         -         -  ||     - |   
                                 6        7                                                                                        97                                                                                                          98|     100   
                                                                                                                                                                                                                                                99           

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X44)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1X44)

(-) Gene Ontology  (11, 11)

NMR Structure(hide GO term definitions)
Chain A   (MYPC1_HUMAN | Q00872)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
    GO:0031432    titin binding    Interacting selectively and non-covalently with titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively.
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0006936    muscle contraction    A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:1903955    positive regulation of protein targeting to mitochondrion    Any process that activates or increases the frequency, rate or extent of protein targeting to mitochondrion.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030016    myofibril    The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism.
    GO:0032982    myosin filament    A protein complex containing myosin heavy chains, plus associated light chains and other proteins, in which the myosin heavy chains are arranged into a filament.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYPC1_HUMAN | Q008722dav 2yuv 2yuw 2yux 2yuz 2yxm

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