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(-) Description

Title :  SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 6
 
Authors :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  15 Feb 05  (Deposition) - 15 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ch Domain, All-Alpha, Nppsfa, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Ch Domain Of Human Rho Guanine Nucleotide Exchange Factor 6
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 6
    ChainsA
    EngineeredYES
    Expression System PlasmidP040910-16
    Expression System Vector TypePLASMID
    FragmentCH DOMAIN
    GeneARHGEF6
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymPAK-INTERACTING EXCHANGE FACTOR ALPHA, ALPHA-PIX, COOL-2

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WYR)

(-) Sites  (0, 0)

(no "Site" information available for 1WYR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WYR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WYR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WYR)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.ARHG6_HUMAN1-110  1A:8-114

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002506171ENSE00000979461X:135864247-1358628771371ARHG6_HUMAN1-55551A:5-5955
1.2ENST000002506172ENSE00000979462X:135861656-13586157384ARHG6_HUMAN56-83281A:60-8728
1.5ENST000002506175ENSE00001750147X:135829751-13582966785ARHG6_HUMAN84-112291A:88-11528
1.6ENST000002506176ENSE00001611860X:135827506-135827382125ARHG6_HUMAN112-153421A:116-1216
1.7ENST000002506177ENSE00001771122X:135825945-135825744202ARHG6_HUMAN154-221680--
1.8ENST000002506178ENSE00000890637X:135814331-13581426171ARHG6_HUMAN221-244240--
1.9ENST000002506179ENSE00000890636X:135795529-13579543595ARHG6_HUMAN245-276320--
1.10ENST0000025061710ENSE00000677037X:135790929-13579083496ARHG6_HUMAN276-308330--
1.11ENST0000025061711ENSE00000890635X:135789189-135789067123ARHG6_HUMAN308-349420--
1.12ENST0000025061712ENSE00000890634X:135772907-135772769139ARHG6_HUMAN349-395470--
1.13ENST0000025061713ENSE00000890633X:135770150-13577009160ARHG6_HUMAN396-415200--
1.14ENST0000025061714ENSE00000890632X:135767982-135767836147ARHG6_HUMAN416-464490--
1.15ENST0000025061715ENSE00001617240X:135765003-13576491787ARHG6_HUMAN465-493290--
1.16ENST0000025061716ENSE00000890630X:135764127-13576404979ARHG6_HUMAN494-520270--
1.17ENST0000025061717ENSE00001246193X:135763035-135762890146ARHG6_HUMAN520-568490--
1.18ENST0000025061718ENSE00000890628X:135761819-135761694126ARHG6_HUMAN569-610420--
1.19ENST0000025061719ENSE00001436514X:135760115-13576009521ARHG6_HUMAN611-61770--
1.20ENST0000025061720ENSE00001436482X:135758876-13575878394ARHG6_HUMAN618-649320--
1.21ENST0000025061721ENSE00000890626X:135757255-13575716690ARHG6_HUMAN649-679310--
1.22ENST0000025061722ENSE00000677022X:135754278-135754179100ARHG6_HUMAN679-712340--
1.23ENST0000025061723ENSE00000677021X:135751695-13575164155ARHG6_HUMAN712-730190--
1.24ENST0000025061724ENSE00001453176X:135750328-1357477062623ARHG6_HUMAN731-776460--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with ARHG6_HUMAN | Q15052 from UniProtKB/Swiss-Prot  Length:776

    Alignment length:128
                                1                                                                                                                           
                                |    6        16        26        36        46        56        66        76        86        96       106       116        
          ARHG6_HUMAN     - ----MNPEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATEDQLSERPCGRSSS 124
               SCOP domains d1wyra_ A: automated matches                                                                                                     SCOP domains
               CATH domains 1wyrA00 A:1-121 Actin-binding Protein, T-fimbrin; domain 1                                                                       CATH domains
               Pfam domains -------CH-1wyrA01 A:8-115                                                                                          ------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhh-------...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----CH  PDB: A:8-114 UniProt: 1-110                                                                               -------------- PROSITE
           Transcript 1 (1) ----Exon 1.1  PDB: A:5-59 UniProt: 1-55                    Exon 1.2  PDB: A:60-87      Exon 1.5  PDB: A:88-115      ------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------Exon 1.6      Transcript 1 (2)
                 1wyr A   1 GSSGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLLAVNKATE-------SGPSSG 121
                                    10        20        30        40        50        60        70        80        90       100       110    |    -  |     
                                                                                                                                            115     116     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: CH (43)

(-) Gene Ontology  (15, 15)

NMR Structure(hide GO term definitions)
Chain A   (ARHG6_HUMAN | Q15052)
molecular function
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007254    JNK cascade    An intracellular protein kinase cascade containing at least a JNK (a MAPK), a JNKK (a MAPKK) and a JUN3K (a MAP3K). The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0030032    lamellipodium assembly    Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
    GO:0051056    regulation of small GTPase mediated signal transduction    Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
cellular component
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.

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        ARHG6_HUMAN | Q150521ujy

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