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(-) Description

Title :  HUMAN CYTOSOLIC ACETOACETYL-COA THIOLASE
 
Authors :  P. Kursula, T. Fukao, N. Kondo, R. K. Wierenga
Date :  20 Jun 04  (Deposition) - 01 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Thiolase Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Kursula, H. Sikkila, T. Fukao, N. Kondo, R. K. Wierenga
High Resolution Crystal Structures Of Human Cytosolic Thiolase (Ct): A Comparison Of The Active Sites Of Human Ct Bacterial Thiolase, And Bacterial Kas I
J. Mol. Biol. V. 347 189 2005
PubMed-ID: 15733928  |  Reference-DOI: 10.1016/J.JMB.2005.01.018

(-) Compounds

Molecule 1 - ACETYL-COENZYME A ACETYLTRANSFERASE 2
    ChainsA
    EC Number2.3.1.9
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymACETOACETYL COENZYME A THIOLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
2GOL2Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2GOL8Ligand/IonGLYCEROL
3SO412Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:12 , ALA A:13 , ARG A:44 , LEU A:277 , ASN A:338 , HIS A:368 , HOH A:2109 , HOH A:2144 , HOH A:2149 , HOH A:2169BINDING SITE FOR RESIDUE SO4 A 1001
2AC2SOFTWARETYR A:81 , HIS A:156 , GLU A:289 , PRO A:290 , SER A:291 , HOH A:2133BINDING SITE FOR RESIDUE SO4 A 1002
3AC3SOFTWAREGLU A:215 , LYS A:217 , THR A:218 , HOH A:2232BINDING SITE FOR RESIDUE SO4 A 1003
4AC4SOFTWARELEU A:151 , GLY A:253BINDING SITE FOR RESIDUE GOL A 2001
5AC5SOFTWARELEU A:184 , GLU A:322 , VAL A:332 , ASN A:343 , HOH A:2241BINDING SITE FOR RESIDUE GOL A 2002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WL5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WL5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_019686K211RTHIC_HUMANPolymorphism25683AK211R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_019686K211RTHIC_HUMANPolymorphism25683AK211R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOLASE_2PS00737 Thiolases signature 2.THIC_HUMAN343-359  1A:343-359
2THIOLASE_3PS00099 Thiolases active site.THIC_HUMAN378-391  1A:378-391
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOLASE_2PS00737 Thiolases signature 2.THIC_HUMAN343-359  4A:343-359
2THIOLASE_3PS00099 Thiolases active site.THIC_HUMAN378-391  4A:378-391

(-) Exons   (9, 9)

Asymmetric Unit (9, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003670481ENSE00001510952chr6:160181360-1601831741815THIC_HUMAN1-19191A:4-1916
1.3ENST000003670483ENSE00002148943chr6:160183951-160184085135THIC_HUMAN19-64461A:19-6446
1.4ENST000003670484ENSE00002146412chr6:160188037-160188218182THIC_HUMAN64-124611A:64-12461
1.5ENST000003670485ENSE00002146388chr6:160189543-160189660118THIC_HUMAN125-164401A:125-16440
1.6bENST000003670486bENSE00000765642chr6:160196202-160196345144THIC_HUMAN164-212491A:164-21249
1.6dENST000003670486dENSE00000765643chr6:160197182-160197304123THIC_HUMAN212-253421A:212-25342
1.7ENST000003670487ENSE00002165191chr6:160198334-160198488155THIC_HUMAN253-304521A:253-30452
1.8ENST000003670488ENSE00002140965chr6:160199202-160199312111THIC_HUMAN305-341371A:305-34137
1.9bENST000003670489bENSE00001923516chr6:160199691-160200087397THIC_HUMAN342-397561A:342-39756

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:394
 aligned with THIC_HUMAN | Q9BWD1 from UniProtKB/Swiss-Prot  Length:397

    Alignment length:394
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    
           THIC_HUMAN     4 GSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE 397
               SCOP domains d1wl5a1 A:4-271 automated matches                                                                                                                                                                                                                                           d1wl5a2 A:272-397 automated matches                                                                                            SCOP domains
               CATH domains 1wl5A01 A:4-127,A:197-280  [code=3.40.47.10, no name defined]                                                               ---------------------------1wl5A02 A:155-196,A:281-394               1wl5A01 A:4-127,A:197-280  [code=3.40.47.10, no name defined]                       1wl5A02 A:155-196,A:281-394  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains -Thiolase_N-1wl5A02 A:5-267                                                                                                                                                                                                                                             ------Thiolase_C-1wl5A01 A:274-396                                                                                               - Pfam domains
         Sec.struct. author ....eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh.......eeee.hhhhhhhhhhhhhhhhhhh....eeeeeeeee.....ee..............eehhhhhh.ee....eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeee..........hhhhhhh.............hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
           Transcript 1 (1) Exon 1.1        --------------------------------------------Exon 1.4  PDB: A:64-124 UniProt: 64-124                      Exon 1.5  PDB: A:125-164                -----------------------------------------------Exon 1.6d  PDB: A:212-253 UniProt: 212-253---------------------------------------------------Exon 1.8  PDB: A:305-341             Exon 1.9b  PDB: A:342-397 UniProt: 342-397               Transcript 1 (1)
           Transcript 1 (2) ---------------Exon 1.3  PDB: A:19-64 UniProt: 19-64         ---------------------------------------------------------------------------------------------------Exon 1.6b  PDB: A:164-212 UniProt: 164-212       ----------------------------------------Exon 1.7  PDB: A:253-304 UniProt: 253-304           --------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1wl5 A   4 GSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMIcGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQRE 397
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393    
                                                                                                                   92-CSO                                                                                                                                                                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: Thiolase (72)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A   (THIC_HUMAN | Q9BWD1)
molecular function
    GO:0003985    acetyl-CoA C-acetyltransferase activity    Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THIC_HUMAN | Q9BWD11wl4

(-) Related Entries Specified in the PDB File

1wl4 THE SAME PROTEIN AT 1.55 ANGSTROM