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(-) Description

Title :  SOLUTION STRUCTURE OF THE FORTH CH DOMAIN FROM HUMAN PLASTIN 3 T-ISOFORM
 
Authors :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  29 May 04  (Deposition) - 29 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ch Domain, Actin Binding, Plastin 3, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Forth Ch Domain From Human Plastin 3 T-Isoform
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - T-PLASTIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040223-07
    Expression System Vector Type: PLASMID
    Fragment: CH DOMAIN
    Gene: IMS CDNA HEP01557
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: PLASTIN 3 T-ISOFORM

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WJO)

(-) Sites  (0, 0)

(no "Site" information available for 1WJO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WJO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WJO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WJO)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.PLST_HUMAN123-239
267-378
397-506
518-627		  1-
-
-
A:8-115

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003558991cENSE00001456427X:114795509-11479558779PLST_HUMAN-00--
1.3ENST000003558993ENSE00002171961X:114844555-11484463581PLST_HUMAN1-25250--
1.6ENST000003558996ENSE00000893705X:114856558-114856721164PLST_HUMAN25-79550--
1.8ENST000003558998ENSE00000893704X:114863510-114863639130PLST_HUMAN80-123440--
1.9cENST000003558999cENSE00001702745X:114864147-114864279133PLST_HUMAN123-167450--
1.10aENST0000035589910aENSE00001796931X:114868312-11486839382PLST_HUMAN167-194280--
1.11ENST0000035589911ENSE00001592354X:114869193-114869358166PLST_HUMAN195-250560--
1.12ENST0000035589912ENSE00000675060X:114871148-114871290143PLST_HUMAN250-297480--
1.15bENST0000035589915bENSE00000675079X:114874720-11487481596PLST_HUMAN298-329320--
1.16bENST0000035589916bENSE00000675108X:114877625-114877820196PLST_HUMAN330-395660--
1.17ENST0000035589917ENSE00000675119X:114879341-11487941979PLST_HUMAN395-421270--
1.18bENST0000035589918bENSE00000675120X:114880392-114880506115PLST_HUMAN421-459390--
1.19bENST0000035589919bENSE00001687130X:114880722-114880855134PLST_HUMAN460-504451A:1-22
1.20aENST0000035589920aENSE00000675128X:114881870-114881993124PLST_HUMAN504-545421A:3-3331
1.21ENST0000035589921ENSE00001279832X:114882213-114882337125PLST_HUMAN546-587421A:34-7542
1.22dENST0000035589922dENSE00001429565X:114883749-1148851771429PLST_HUMAN587-630441A:75-11844

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with PLST_HUMAN | P13797 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:154
                                                                                                                                                                             630      
                                   492       502       512       522       532       542       552       562       572       582       592       602       612       622       | -    
           PLST_HUMAN   483 GQDLNDGNQTLTLALVWQLMRRYTLNVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRV------   -
               SCOP domains d1                              wjoa_ A: Fimbrin (Plastin), actin-crosslinking domain                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------CH-1wjoA01 A:9-115                                                                                         --------- Pfam domains
         Sec.struct. author ..------------------------------......hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh......hhhhhhhh.....hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CH  PDB: -              -----------CH  PDB: A:8-115 UniProt: 518-627                                                                             --------- PROSITE
           Transcript 1 (1) Exon 1.19b  PDB: A:1-2-----------------------------------------Exon 1.21  PDB: A:34-75 UniProt: 546-587  ------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------Exon 1.20a  PDB: A:3-33 UniProt: 504-545  -----------------------------------------Exon 1.22d  PDB: A:75-118 UniProt: 587-630  ------ Transcript 1 (2)
                 1wjo A   1 GS------------------------------SGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRVSGPSSG 124
                             |       -         -         -  |     10        20        30        40        50        60        70        80        90       100       110       120    
                             2                              3
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WJO)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: CH (43)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (PLST_HUMAN | P13797)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0042491    auditory receptor cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an auditory hair cell.
    GO:0060348    bone development    The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0032420    stereocilium    An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.

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  1wjo
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  PLST_HUMAN | P13797
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLST_HUMAN | P13797: 1aoa

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