1WDD - JenaLib

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1001	BINDING SITE FOR RESIDUE MG A 1476
02	AC2	SOFTWARE	LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:2001	BINDING SITE FOR RESIDUE MG E 2476
03	AC3	SOFTWARE	THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:3108 , HOH A:3109 , HOH A:3115 , HOH A:3117 , HOH A:3131 , HOH A:3132 , GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:3028 , HOH E:3038	BINDING SITE FOR RESIDUE CAP A 1001
04	AC4	SOFTWARE	GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:3032 , HOH A:3055 , THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:2476 , HOH E:3020 , HOH E:3044 , HOH E:3045 , HOH E:3046 , HOH E:3130 , HOH E:3131	BINDING SITE FOR RESIDUE CAP E 2001
05	AC5	SOFTWARE	LYS A:32 , PRO A:104 , LEU A:105 , ASP A:106 , HOH A:3027 , HOH A:3166 , HOH A:3167 , HOH A:3407 , HOH E:3142	BINDING SITE FOR RESIDUE GOL A 3001
06	AC6	SOFTWARE	HOH A:3127 , HOH A:3204 , HOH A:3205 , LYS E:32 , PRO E:104 , LEU E:105 , ASP E:106 , HOH E:3053 , HOH E:3362 , HOH E:3375	BINDING SITE FOR RESIDUE GOL E 3002
07	AC7	SOFTWARE	LEU A:270 , LEU E:270 , MET E:297 , HOH E:3035 , HOH E:3036 , HOH E:3037	BINDING SITE FOR RESIDUE GOL E 3003
08	AC8	SOFTWARE	GLY A:16 , VAL A:17 , LYS A:18 , TYR A:20 , THR A:65 , THR A:67 , THR A:68 , GOL A:3010 , HOH A:3021 , HOH A:3036	BINDING SITE FOR RESIDUE GOL A 3004
09	AC9	SOFTWARE	GLU E:52 , HOH E:3042 , HOH E:3058	BINDING SITE FOR RESIDUE GOL E 3005
10	BC1	SOFTWARE	GLU A:52 , HOH A:3029 , HOH A:3030 , HOH A:3259 , HOH A:3360	BINDING SITE FOR RESIDUE GOL A 3006
11	BC2	SOFTWARE	ASN E:163 , ARG E:187 , GLU W:43 , ARG W:64 , TYR W:65 , TRP W:66 , ARG W:99 , GLN W:110 , HOH W:536 , HOH W:558	BINDING SITE FOR RESIDUE GOL W 3007
12	BC3	SOFTWARE	GLN W:2 , VAL W:3 , TRP W:69 , ALA W:92 , HOH W:312 , HOH W:669	BINDING SITE FOR RESIDUE GOL W 3008
13	BC4	SOFTWARE	TYR E:226 , GLN E:229 , ALA E:230 , HOH E:3366 , VAL W:50 , ASN W:54 , ARG W:56 , HOH W:555	BINDING SITE FOR RESIDUE GOL E 3009
14	BC5	SOFTWARE	LYS A:18 , THR A:23 , THR A:68 , ASP A:72 , LEU A:77 , GOL A:3004 , GOL A:3012 , HOH A:3038 , HOH A:3327	BINDING SITE FOR RESIDUE GOL A 3010
15	BC6	SOFTWARE	GLY E:16 , VAL E:17 , LYS E:18 , TYR E:20 , THR E:65 , THR E:67 , THR E:68 , HOH E:3026 , HOH E:3049 , HOH E:3304	BINDING SITE FOR RESIDUE GOL E 3011
16	BC7	SOFTWARE	VAL A:11 , PHE A:13 , THR A:68 , VAL A:69 , TRP A:70 , GLY A:73 , GOL A:3010 , PHE W:74	BINDING SITE FOR RESIDUE GOL A 3012
17	BC8	SOFTWARE	THR E:68 , VAL E:69 , TRP E:70 , HOH E:3183	BINDING SITE FOR RESIDUE GOL E 3013
18	BC9	SOFTWARE	ARG E:295 , HIS E:298 , PHE E:311 , GLY E:329 , GLU E:336 , PHE E:345 , HOH E:3128 , HOH E:3133 , HOH E:3172 , HOH E:3300	BINDING SITE FOR RESIDUE GOL E 3014
19	CC1	SOFTWARE	ASN A:163 , ARG A:187 , HOH A:3303 , GLU S:43 , ARG S:64 , TYR S:65 , TRP S:66 , ARG S:99 , GLN S:110 , HOH S:177	BINDING SITE FOR RESIDUE GOL A 3015
20	CC2	SOFTWARE	HOH A:3263 , ILE E:155 , GLN E:156 , ARG E:350 , ASP E:351 , ASP E:352 , PRO E:372 , GLY E:373 , HOH E:3141	BINDING SITE FOR RESIDUE GOL E 3016
21	CC3	SOFTWARE	THR A:23 , LEU A:77 , ASP A:78 , LYS A:81 , HOH A:3161	BINDING SITE FOR RESIDUE GOL A 3017

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:465
 aligned with RBL_ORYSJ | P0C512 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
            RBL_ORYSJ    11 VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEPVDKL 475
               SCOP domains d1wdda2 A:11-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                            d1wdda1 A:151-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -----------1wddA01 A:22-148  [code=3.30.70.150, no name defined]                                                                          1wddA02 A:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee..hhhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdd A  11 VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTkDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEPVDKL 475
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200|      210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
                                                                                                                                                                                                                        201-KCX

Chain E from PDB  Type:PROTEIN  Length:464
 aligned with RBL_ORYSJ | P0C512 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:464
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
            RBL_ORYSJ    12 GFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEPVDKL 475
               SCOP domains d1wdde2 E:12-150 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                           d1wdde1 E:151-475 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------1wddE01 E:22-148  [code=3.30.70.150, no name defined]                                                                          1wddE02 E:149-462 Rubisco                                                                                                                                                                                                                                                                                                 ------------- CATH domains
           Pfam domains (1) ---------RuBisCO_large_N-1wddE03 E:21-146                                                                                              -------RuBisCO_large-1wddE01 E:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (1)
           Pfam domains (2) ---------RuBisCO_large_N-1wddE04 E:21-146                                                                                              -------RuBisCO_large-1wddE02 E:154-462                                                                                                                                                                                                                                                                                      ------------- Pfam domains (2)
         Sec.struct. author ........hhhhhh..........eeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhhhh.eeeeeee.......eeeeeeehhhhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh.......hhhhhhhhhh.....eee.........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhh....eehhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhh.ee..hhhhh....ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RUBISCO_L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdd E  12 GFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTkDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEPVDKL 475
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
                                                                                                                                                                                                                       201-KCX

Chain S from PDB  Type:PROTEIN  Length:122
 aligned with RBS1_ORYSJ | Q0INY7 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:122
                                    57        67        77        87        97       107       117       127       137       147       157       167  
           RBS1_ORYSJ    48 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 169
               SCOP domains d1wdds_ S: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                 SCOP domains
               CATH domains -1wddS00 S:2-122  [code=3.30.190.10, no name defined]                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.....................eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdd S   1 mQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 122
                            |       10        20        30        40        50        60        70        80        90       100       110       120  
                            1-MME

Chain W from PDB  Type:PROTEIN  Length:122
 aligned with RBS1_ORYSJ | Q0INY7 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:122
                                    57        67        77        87        97       107       117       127       137       147       157       167  
           RBS1_ORYSJ    48 MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 169
               SCOP domains d1wddw_ W: Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                 SCOP domains
               CATH domains -1wddW00 W:2-122  [code=3.30.190.10, no name defined]                                                                      CATH domains
           Pfam domains (1) ----------RuBisCO_small-1wddW01 W:11-120                                                                                -- Pfam domains (1)
           Pfam domains (2) ----------RuBisCO_small-1wddW02 W:11-120                                                                                -- Pfam domains (2)
         Sec.struct. author .....................hhhhhhhhhhhhhhh..eeeeeee.....................eee........hhhhhhhhhhhhhhhh...eeeeeeee....eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wdd W   1 mQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC 122
                            |       10        20        30        40        50        60        70        80        90       100       110       120  
                            1-MME

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (3, 6)

CATH Domains (3, 6)

Pfam Domains (3, 6)

Gene Ontology (14, 25)

Asymmetric Unit(hide GO term definitions)

Chain A,E (RBL_ORYSJ | P0C512)

molecular function
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016984	ribulose-bisphosphate carboxylase activity	Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
	GO:0015977	carbon fixation	A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009853	photorespiration	A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0019253	reductive pentose-phosphate cycle	The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain S,W (RBS1_ORYSJ | Q0INY7)

molecular function
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016984	ribulose-bisphosphate carboxylase activity	Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
	GO:0015977	carbon fixation	A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009853	photorespiration	A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0019253	reductive pentose-phosphate cycle	The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 25)

Sites (21, 21)

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 6)

CATH Domains (3, 6)

Pfam Domains (3, 6)

Gene Ontology (14, 25)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File