1WDD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2 CARBOXYARABINITOL-1,5-BISPHOSPHATE
• Keywords: RUBISCO, PHOTOSYNTHESIS, ALPHA/BETA BARREL, N-METHYLMETHIONI TRANSLATIONAL MODIFICATION, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1WDD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	A	465	3627	12
2	Protein	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C	S	122	1007	9
3	Protein	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	E	464	3620	12
4	Protein	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C	W	122	1007	9
5	Ligand	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	A	9	0	64
6	Ligand	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	E	10	0	70
7	Ligand	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C	W	2	0	12
8	Water			999	0	999
total				2193	9261	1187

Proteins

Unit 1	VAL 11 GLY 12 PHE 13 LYS 14 ALA 15 GLY 16 VAL 17 LYS 18 ASP 19 TYR 20 LYS 21 LEU 22 THR 23 TYR 24 TYR 25 THR 26 PRO 27 GLU 28 TYR 29 GLU 30 THR 31 LYS 32 ASP 33 THR 34 ASP 35 ILE 36 LEU 37 ALA 38 ALA 39 PHE 40 ARG 41 VAL 42 THR 43 PRO 44 GLN 45 PRO 46 GLY 47 VAL 48 PRO 49 PRO 50 GLU 51 GLU 52 ALA 53 GLY 54 ALA 55 ALA 56 VAL 57 ALA 58 ALA 59 GLU 60 SER 61 SER 62 THR 63 GLY 64 THR 65 TRP 66 THR 67 THR 68 VAL 69 TRP 70 THR 71 ASP 72 GLY 73 LEU 74 THR 75 SER 76 LEU 77 ASP 78 ARG 79 TYR 80 LYS 81 GLY 82 ARG 83 CYS 84 TYR 85 HIS 86 ILE 87 GLU 88 PRO 89 VAL 90 VAL 91 GLY 92 GLU 93 ASP 94 ASN 95 GLN 96 TYR 97 ILE 98 ALA 99 TYR 100 VAL 101 ALA 102 TYR 103 PRO 104 LEU 105 ASP 106 LEU 107 PHE 108 GLU 109 GLU 110 GLY 111 SER 112 VAL 113 THR 114 ASN 115 MET 116 PHE 117 THR 118 SER 119 ILE 120 VAL 121 GLY 122 ASN 123 VAL 124 PHE 125 GLY 126 PHE 127 LYS 128 ALA 129 LEU 130 ARG 131 ALA 132 LEU 133 ARG 134 LEU 135 GLU 136 ASP 137 LEU 138 ARG 139 ILE 140 PRO 141 PRO 142 THR 143 TYR 144 SER 145 LYS 146 THR 147 PHE 148 GLN 149 GLY 150 PRO 151 PRO 152 HIS 153 GLY 154 ILE 155 GLN 156 VAL 157 GLU 158 ARG 159 ASP 160 LYS 161 LEU 162 ASN 163 LYS 164 TYR 165 GLY 166 ARG 167 PRO 168 LEU 169 LEU 170 GLY 171 CYS 172 THR 173 ILE 174 LYS 175 PRO 176 LYS 177 LEU 178 GLY 179 LEU 180 SER 181 ALA 182 LYS 183 ASN 184 TYR 185 GLY 186 ARG 187 ALA 188 CYS 189 TYR 190 GLU 191 CYS 192 LEU 193 ARG 194 GLY 195 GLY 196 LEU 197 ASP 198 PHE 199 THR 200 KCX 201 ASP 202 ASP 203 GLU 204 ASN 205 VAL 206 ASN 207 SER 208 GLN 209 PRO 210 PHE 211 MET 212 ARG 213 TRP 214 ARG 215 ASP 216 ARG 217 PHE 218 VAL 219 PHE 220 CYS 221 ALA 222 GLU 223 ALA 224 ILE 225 TYR 226 LYS 227 SER 228 GLN 229 ALA 230 GLU 231 THR 232 GLY 233 GLU 234 ILE 235 LYS 236 GLY 237 HIS 238 TYR 239 LEU 240 ASN 241 ALA 242 THR 243 ALA 244 GLY 245 THR 246 CYS 247 GLU 248 GLU 249 MET 250 ILE 251 LYS 252 ARG 253 ALA 254 VAL 255 PHE 256 ALA 257 ARG 258 GLU 259 LEU 260 GLY 261 VAL 262 PRO 263 ILE 264 VAL 265 MET 266 HIS 267 ASP 268 TYR 269 LEU 270 THR 271 GLY 272 GLY 273 PHE 274 THR 275 ALA 276 ASN 277 THR 278 SER 279 LEU 280 ALA 281 HIS 282 TYR 283 CYS 284 ARG 285 ASP 286 ASN 287 GLY 288 LEU 289 LEU 290 LEU 291 HIS 292 ILE 293 HIS 294 ARG 295 ALA 296 MET 297 HIS 298 ALA 299 VAL 300 ILE 301 ASP 302 ARG 303 GLN 304 LYS 305 ASN 306 HIS 307 GLY 308 MET 309 HIS 310 PHE 311 ARG 312 VAL 313 LEU 314 ALA 315 LYS 316 ALA 317 LEU 318 ARG 319 MET 320 SER 321 GLY 322 GLY 323 ASP 324 HIS 325 ILE 326 HIS 327 ALA 328 GLY 329 THR 330 VAL 331 VAL 332 GLY 333 LYS 334 LEU 335 GLU 336 GLY 337 GLU 338 ARG 339 GLU 340 MET 341 THR 342 LEU 343 GLY 344 PHE 345 VAL 346 ASP 347 LEU 348 LEU 349 ARG 350 ASP 351 ASP 352 PHE 353 ILE 354 GLU 355 LYS 356 ASP 357 ARG 358 ALA 359 ARG 360 GLY 361 ILE 362 PHE 363 PHE 364 THR 365 GLN 366 ASP 367 TRP 368 VAL 369 SER 370 MET 371 PRO 372 GLY 373 VAL 374 ILE 375 PRO 376 VAL 377 ALA 378 SER 379 GLY 380 GLY 381 ILE 382 HIS 383 VAL 384 TRP 385 HIS 386 MET 387 PRO 388 ALA 389 LEU 390 THR 391 GLU 392 ILE 393 PHE 394 GLY 395 ASP 396 ASP 397 SER 398 VAL 399 LEU 400 GLN 401 PHE 402 GLY 403 GLY 404 GLY 405 THR 406 LEU 407 GLY 408 HIS 409 PRO 410 TRP 411 GLY 412 ASN 413 ALA 414 PRO 415 GLY 416 ALA 417 ALA 418 ALA 419 ASN 420 ARG 421 VAL 422 ALA 423 LEU 424 GLU 425 ALA 426 CYS 427 VAL 428 GLN 429 ALA 430 ARG 431 ASN 432 GLU 433 GLY 434 ARG 435 ASP 436 LEU 437 ALA 438 ARG 439 GLU 440 GLY 441 ASN 442 GLU 443 ILE 444 ILE 445 ARG 446 SER 447 ALA 448 CYS 449 LYS 450 TRP 451 SER 452 PRO 453 GLU 454 LEU 455 ALA 456 ALA 457 ALA 458 CYS 459 GLU 460 ILE 461 TRP 462 LYS 463 ALA 464 ILE 465 LYS 466 PHE 467 GLU 468 PHE 469 GLU 470 PRO 471 VAL 472 ASP 473 LYS 474 LEU 475
Unit 2	MME 1 GLN 2 VAL 3 TRP 4 PRO 5 ILE 6 GLU 7 GLY 8 ILE 9 LYS 10 LYS 11 PHE 12 GLU 13 THR 14 LEU 15 SER 16 TYR 17 LEU 18 PRO 19 PRO 20 LEU 21 THR 22 VAL 23 GLU 24 ASP 25 LEU 26 LEU 27 LYS 28 GLN 29 ILE 30 GLU 31 TYR 32 LEU 33 LEU 34 ARG 35 SER 36 LYS 37 TRP 38 VAL 39 PRO 40 CYS 41 LEU 42 GLU 43 PHE 44 SER 45 LYS 46 VAL 47 GLY 48 PHE 49 VAL 50 TYR 51 ARG 52 GLU 53 ASN 54 HIS 55 ARG 56 SER 57 PRO 58 GLY 59 TYR 60 TYR 61 ASP 62 GLY 63 ARG 64 TYR 65 TRP 66 THR 67 MET 68 TRP 69 LYS 70 LEU 71 PRO 72 MET 73 PHE 74 GLY 75 CYS 76 THR 77 ASP 78 ALA 79 THR 80 GLN 81 VAL 82 LEU 83 LYS 84 GLU 85 LEU 86 GLU 87 GLU 88 ALA 89 LYS 90 LYS 91 ALA 92 TYR 93 PRO 94 ASP 95 ALA 96 PHE 97 VAL 98 ARG 99 ILE 100 ILE 101 GLY 102 PHE 103 ASP 104 ASN 105 VAL 106 ARG 107 GLN 108 VAL 109 GLN 110 LEU 111 ILE 112 SER 113 PHE 114 ILE 115 ALA 116 TYR 117 LYS 118 PRO 119 PRO 120 GLY 121 CYS 122
Unit 3	GLY 12 PHE 13 LYS 14 ALA 15 GLY 16 VAL 17 LYS 18 ASP 19 TYR 20 LYS 21 LEU 22 THR 23 TYR 24 TYR 25 THR 26 PRO 27 GLU 28 TYR 29 GLU 30 THR 31 LYS 32 ASP 33 THR 34 ASP 35 ILE 36 LEU 37 ALA 38 ALA 39 PHE 40 ARG 41 VAL 42 THR 43 PRO 44 GLN 45 PRO 46 GLY 47 VAL 48 PRO 49 PRO 50 GLU 51 GLU 52 ALA 53 GLY 54 ALA 55 ALA 56 VAL 57 ALA 58 ALA 59 GLU 60 SER 61 SER 62 THR 63 GLY 64 THR 65 TRP 66 THR 67 THR 68 VAL 69 TRP 70 THR 71 ASP 72 GLY 73 LEU 74 THR 75 SER 76 LEU 77 ASP 78 ARG 79 TYR 80 LYS 81 GLY 82 ARG 83 CYS 84 TYR 85 HIS 86 ILE 87 GLU 88 PRO 89 VAL 90 VAL 91 GLY 92 GLU 93 ASP 94 ASN 95 GLN 96 TYR 97 ILE 98 ALA 99 TYR 100 VAL 101 ALA 102 TYR 103 PRO 104 LEU 105 ASP 106 LEU 107 PHE 108 GLU 109 GLU 110 GLY 111 SER 112 VAL 113 THR 114 ASN 115 MET 116 PHE 117 THR 118 SER 119 ILE 120 VAL 121 GLY 122 ASN 123 VAL 124 PHE 125 GLY 126 PHE 127 LYS 128 ALA 129 LEU 130 ARG 131 ALA 132 LEU 133 ARG 134 LEU 135 GLU 136 ASP 137 LEU 138 ARG 139 ILE 140 PRO 141 PRO 142 THR 143 TYR 144 SER 145 LYS 146 THR 147 PHE 148 GLN 149 GLY 150 PRO 151 PRO 152 HIS 153 GLY 154 ILE 155 GLN 156 VAL 157 GLU 158 ARG 159 ASP 160 LYS 161 LEU 162 ASN 163 LYS 164 TYR 165 GLY 166 ARG 167 PRO 168 LEU 169 LEU 170 GLY 171 CYS 172 THR 173 ILE 174 LYS 175 PRO 176 LYS 177 LEU 178 GLY 179 LEU 180 SER 181 ALA 182 LYS 183 ASN 184 TYR 185 GLY 186 ARG 187 ALA 188 CYS 189 TYR 190 GLU 191 CYS 192 LEU 193 ARG 194 GLY 195 GLY 196 LEU 197 ASP 198 PHE 199 THR 200 KCX 201 ASP 202 ASP 203 GLU 204 ASN 205 VAL 206 ASN 207 SER 208 GLN 209 PRO 210 PHE 211 MET 212 ARG 213 TRP 214 ARG 215 ASP 216 ARG 217 PHE 218 VAL 219 PHE 220 CYS 221 ALA 222 GLU 223 ALA 224 ILE 225 TYR 226 LYS 227 SER 228 GLN 229 ALA 230 GLU 231 THR 232 GLY 233 GLU 234 ILE 235 LYS 236 GLY 237 HIS 238 TYR 239 LEU 240 ASN 241 ALA 242 THR 243 ALA 244 GLY 245 THR 246 CYS 247 GLU 248 GLU 249 MET 250 ILE 251 LYS 252 ARG 253 ALA 254 VAL 255 PHE 256 ALA 257 ARG 258 GLU 259 LEU 260 GLY 261 VAL 262 PRO 263 ILE 264 VAL 265 MET 266 HIS 267 ASP 268 TYR 269 LEU 270 THR 271 GLY 272 GLY 273 PHE 274 THR 275 ALA 276 ASN 277 THR 278 SER 279 LEU 280 ALA 281 HIS 282 TYR 283 CYS 284 ARG 285 ASP 286 ASN 287 GLY 288 LEU 289 LEU 290 LEU 291 HIS 292 ILE 293 HIS 294 ARG 295 ALA 296 MET 297 HIS 298 ALA 299 VAL 300 ILE 301 ASP 302 ARG 303 GLN 304 LYS 305 ASN 306 HIS 307 GLY 308 MET 309 HIS 310 PHE 311 ARG 312 VAL 313 LEU 314 ALA 315 LYS 316 ALA 317 LEU 318 ARG 319 MET 320 SER 321 GLY 322 GLY 323 ASP 324 HIS 325 ILE 326 HIS 327 ALA 328 GLY 329 THR 330 VAL 331 VAL 332 GLY 333 LYS 334 LEU 335 GLU 336 GLY 337 GLU 338 ARG 339 GLU 340 MET 341 THR 342 LEU 343 GLY 344 PHE 345 VAL 346 ASP 347 LEU 348 LEU 349 ARG 350 ASP 351 ASP 352 PHE 353 ILE 354 GLU 355 LYS 356 ASP 357 ARG 358 ALA 359 ARG 360 GLY 361 ILE 362 PHE 363 PHE 364 THR 365 GLN 366 ASP 367 TRP 368 VAL 369 SER 370 MET 371 PRO 372 GLY 373 VAL 374 ILE 375 PRO 376 VAL 377 ALA 378 SER 379 GLY 380 GLY 381 ILE 382 HIS 383 VAL 384 TRP 385 HIS 386 MET 387 PRO 388 ALA 389 LEU 390 THR 391 GLU 392 ILE 393 PHE 394 GLY 395 ASP 396 ASP 397 SER 398 VAL 399 LEU 400 GLN 401 PHE 402 GLY 403 GLY 404 GLY 405 THR 406 LEU 407 GLY 408 HIS 409 PRO 410 TRP 411 GLY 412 ASN 413 ALA 414 PRO 415 GLY 416 ALA 417 ALA 418 ALA 419 ASN 420 ARG 421 VAL 422 ALA 423 LEU 424 GLU 425 ALA 426 CYS 427 VAL 428 GLN 429 ALA 430 ARG 431 ASN 432 GLU 433 GLY 434 ARG 435 ASP 436 LEU 437 ALA 438 ARG 439 GLU 440 GLY 441 ASN 442 GLU 443 ILE 444 ILE 445 ARG 446 SER 447 ALA 448 CYS 449 LYS 450 TRP 451 SER 452 PRO 453 GLU 454 LEU 455 ALA 456 ALA 457 ALA 458 CYS 459 GLU 460 ILE 461 TRP 462 LYS 463 ALA 464 ILE 465 LYS 466 PHE 467 GLU 468 PHE 469 GLU 470 PRO 471 VAL 472 ASP 473 LYS 474 LEU 475
Unit 4	MME 1 GLN 2 VAL 3 TRP 4 PRO 5 ILE 6 GLU 7 GLY 8 ILE 9 LYS 10 LYS 11 PHE 12 GLU 13 THR 14 LEU 15 SER 16 TYR 17 LEU 18 PRO 19 PRO 20 LEU 21 THR 22 VAL 23 GLU 24 ASP 25 LEU 26 LEU 27 LYS 28 GLN 29 ILE 30 GLU 31 TYR 32 LEU 33 LEU 34 ARG 35 SER 36 LYS 37 TRP 38 VAL 39 PRO 40 CYS 41 LEU 42 GLU 43 PHE 44 SER 45 LYS 46 VAL 47 GLY 48 PHE 49 VAL 50 TYR 51 ARG 52 GLU 53 ASN 54 HIS 55 ARG 56 SER 57 PRO 58 GLY 59 TYR 60 TYR 61 ASP 62 GLY 63 ARG 64 TYR 65 TRP 66 THR 67 MET 68 TRP 69 LYS 70 LEU 71 PRO 72 MET 73 PHE 74 GLY 75 CYS 76 THR 77 ASP 78 ALA 79 THR 80 GLN 81 VAL 82 LEU 83 LYS 84 GLU 85 LEU 86 GLU 87 GLU 88 ALA 89 LYS 90 LYS 91 ALA 92 TYR 93 PRO 94 ASP 95 ALA 96 PHE 97 VAL 98 ARG 99 ILE 100 ILE 101 GLY 102 PHE 103 ASP 104 ASN 105 VAL 106 ARG 107 GLN 108 VAL 109 GLN 110 LEU 111 ILE 112 SER 113 PHE 114 ILE 115 ALA 116 TYR 117 LYS 118 PRO 119 PRO 120 GLY 121 CYS 122

Ligands

Unit 5	CAP 1001 MG 1476 GOL 3001 GOL 3004 GOL 3006 GOL 3010 GOL 3012 GOL 3015 GOL 3017
Unit 6	CAP 2001 MG 2476 GOL 3002 GOL 3003 GOL 3005 GOL 3009 GOL 3011 GOL 3013 GOL 3014 GOL 3016
Unit 7	GOL 3007 GOL 3008